mRNA_P-wetherbeei_contig10602.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10602.1.1
Unique NamemRNA_P-wetherbeei_contig10602.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10602.1.1 vs. uniprot
Match: A0A7V1WAH2_9BACT (N-acetylmuramoyl-L-alanine amidase domain-containing protein n=1 Tax=Chthonomonadales bacterium TaxID=2282151 RepID=A0A7V1WAH2_9BACT)

HSP 1 Score: 188 bits (477), Expect = 2.360e-55
Identity = 96/157 (61.15%), Postives = 116/157 (73.89%), Query Frame = 1
Query:    1 QELRGLHGVTFVKSPNWDVRPLDGKIDAVIVHSTVINTLEGTERAFLDDKVRRVSAHYVVDRDGTVVQMVDERFTAWHAGVSELAGRTGVNDFSIGIEIVNLNDGKDPYTDAQYDAVARIIRDLRSRWEIPDSRVTSHANIARPVGRKSDPVGFDFA 471
            + L  + G  ++ SPN   RP   +I A++VH+TV  TL  T   F   +  RVSAHYVVDRDGTVVQM ++   AWHAGVSEL G+ GVNDFS+GIE+VNLNDG+DP+TDAQY+A A I+R LR    IPDSRV SHA++ARP GRKSDPVGFDFA
Sbjct:  228 EPLERMPGAGWLPSPNRGFRPQGIRITALVVHATVTPTLPLTTWWFRLPR-SRVSAHYVVDRDGTVVQMAEDWARAWHAGVSELEGQEGVNDFSVGIELVNLNDGRDPFTDAQYEAAAAILRHLRQEHAIPDSRVVSHAHVARPAGRKSDPVGFDFA 383          
BLAST of mRNA_P-wetherbeei_contig10602.1.1 vs. uniprot
Match: A0A402D1V6_9BACT (Anhydro-N-acetylmuramyl-tripeptide amidase n=1 Tax=Capsulimonas corticalis TaxID=2219043 RepID=A0A402D1V6_9BACT)

HSP 1 Score: 171 bits (434), Expect = 2.160e-51
Identity = 92/158 (58.23%), Postives = 108/158 (68.35%), Query Frame = 1
Query:    1 QELRGLHGV-TFVKSPNWDVRPLDGKIDAVIVHSTVINTLEGTERAFLDDKVRRVSAHYVVDRDGTVVQMVDERFTAWHAGVSELAGRTGVNDFSIGIEIVNLNDGKDPYTDAQYDAVARIIRDLRSRWEIPDSRVTSHANIARPVGRKSDPVGFDFA 471
            + LR L  V  FV SPN   RP    +D V+VHST  +T E     F   K   VSAH+VV ++G+VVQMV     AWHAG S L G  GVN +S+GIE+VNLNDG+DPY DAQY AVARIIR LR+  +IPDSR+ SHA IA P GRKSDP+GFDFA
Sbjct:   29 ERLRTLDRVDAFVPSPNVSPRPFWANVDCVVVHSTAGSTRESAVAIFRSPK-SGVSAHFVVGKNGSVVQMVPIEMQAWHAGASSLDGAPGVNAYSVGIEMVNLNDGEDPYPDAQYKAVARIIRRLRTVCDIPDSRIVSHAQIALPQGRKSDPLGFDFA 185          
BLAST of mRNA_P-wetherbeei_contig10602.1.1 vs. uniprot
Match: A0A847JXZ4_9BACT (N-acetylmuramoyl-L-alanine amidase domain-containing protein n=1 Tax=Chthonomonadales bacterium TaxID=2282151 RepID=A0A847JXZ4_9BACT)

HSP 1 Score: 163 bits (413), Expect = 1.400e-48
Identity = 82/146 (56.16%), Postives = 101/146 (69.18%), Query Frame = 1
Query:   31 FVKSPNWDVRPLDGKIDAVIVHSTVINTLEGTERAFLDDKVRRVSAHYVVDRDGTVVQMVDERFTAWHAGVSELAGRTGVNDFSIGIEIVNLNDGKDPYTDAQYDAVARIIRDLRSRWEIPDSRVTSHANIARPVGRKSDPVGFDF 468
            FV SPN D RP   +I  V++H+T I TL  T   F   +  +VSAH++VDRDGTVVQMV     AWHAG S L G   VNDFS+GIE+VN  DG+DPY +AQ +A A I+R LR R+ IPD R+ SHA++ARP GRK DP+GFD 
Sbjct:   17 FVASPNVDDRPSGARITCVVMHATEIETLVATIGCFRT-RATKVSAHFIVDRDGTVVQMVPVTRRAWHAGRSALEGIAHVNDFSVGIEMVNRGDGRDPYPEAQIEAAASIVRLLRRRYAIPDRRIVSHAHVARPAGRKEDPLGFDM 161          
BLAST of mRNA_P-wetherbeei_contig10602.1.1 vs. uniprot
Match: UPI0019A722C4 (N-acetylmuramoyl-L-alanine amidase n=1 Tax=Fibrella sp. TaxID=1871320 RepID=UPI0019A722C4)

HSP 1 Score: 158 bits (399), Expect = 3.010e-46
Identity = 81/148 (54.73%), Postives = 101/148 (68.24%), Query Frame = 1
Query:   34 VKSPNWDVRPLDGKIDAVIVHSTVINTLEGTERAFLDDKVRRVSAHYVVDRDGTVVQMVDERFTAWHAGVSELAGRTGVNDFSIGIEIVNLNDGKDPYTDAQYDAVARIIRDLRS--RWEIPDSRVTSHANIARPVGRKSDPVGFDFA 471
            ++SPN++ RP  G +D V++H+TV  T +   R FL  +  +VSAH+VV RDG V QMV     AWH G S L  R  VNDFS+GIE+VN NDG  PYTD QY+AVA IIRDLR+  ++ IP  R+ SH  IA P GRKSDP GFDF+
Sbjct:   35 IRSPNYNSRPFFGTVDCVVLHATVTETADDAIRIFLA-RGSKVSAHFVVARDGKVTQMVPVGKRAWHGGTSRLGRRANVNDFSVGIEMVNRNDGLQPYTDRQYEAVAGIIRDLRTNRQYSIPPERIVSHRAIALPQGRKSDPRGFDFS 181          
BLAST of mRNA_P-wetherbeei_contig10602.1.1 vs. uniprot
Match: UPI0019A65D6D (N-acetylmuramoyl-L-alanine amidase n=1 Tax=Chthonomonadaceae bacterium TaxID=2739509 RepID=UPI0019A65D6D)

HSP 1 Score: 157 bits (396), Expect = 1.510e-45
Identity = 84/146 (57.53%), Postives = 100/146 (68.49%), Query Frame = 1
Query:   31 FVKSPNWDVRPLDGKIDAVIVHSTVINTLEGTERAFLDDKVRRVSAHYVVDRDGTVVQMVDERFTAWHAGVSELAGRTGVNDFSIGIEIVNLNDGKDPYTDAQYDAVARIIRDLRSRWEIPDSRVTSHANIARPVGRKSDPVGFDF 468
            FV SPN D RP    I+ V++HSTV +T E T R F  +   +VSAH VV + G VVQMV     AWHAG S L G+  VN+FS+GIEIVNLNDG D YT+ QY A+A IIR LR+R+ I DS + SHA IA P GRKSDP+ FDF
Sbjct:   58 FVPSPNCDERPSLSVINCVVLHSTVTHTTEETTRHF-QNPFSKVSAHLVVGKAGEVVQMVPIEKRAWHAGTSILEGQERVNNFSVGIEIVNLNDGNDEYTEMQYFAIAGIIRFLRTRYTISDSHIVSHAQIALPPGRKSDPIKFDF 202          
BLAST of mRNA_P-wetherbeei_contig10602.1.1 vs. uniprot
Match: UPI0019BAAE25 (N-acetylmuramoyl-L-alanine amidase n=1 Tax=Akkermansiaceae bacterium TaxID=2562705 RepID=UPI0019BAAE25)

HSP 1 Score: 154 bits (390), Expect = 3.070e-45
Identity = 81/151 (53.64%), Postives = 97/151 (64.24%), Query Frame = 1
Query:   22 GVTFVKSPNWDVRPLDGKIDAVIVHSTVINTLEGTERAFLDDKVRRVSAHYVVDRDGTVVQMVDERFTAWHAGVSELAGRTGVNDFSIGIEIVNLNDGKDPYTDAQYDAVARIIRDLRSR--WEIPDSRVTSHANIARPVGRKSDPVGFDF 468
            G   + SPN + RP    +D V++H+TV  T +   R FL+ +  +VSAH+VV RDG V+QMV     AWH G S L  R  VNDFS+GIEIVN NDG  PYTD QY AVA IIR LR+   + IP  R+ SH  IA P GRKSDP GFDF
Sbjct:    4 GYVAIHSPNHNSRPFFSAVDCVVLHATVTETADDAVRIFLNRR-SKVSAHFVVARDGRVIQMVPLGKRAWHGGTSRLGRRANVNDFSVGIEIVNRNDGSQPYTDRQYKAVAAIIRRLRTEQHYRIPPERIVSHRAIALPEGRKSDPRGFDF 153          
BLAST of mRNA_P-wetherbeei_contig10602.1.1 vs. uniprot
Match: A0A2V9CVJ8_9BACT (N-acetylmuramoyl-L-alanine amidase domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=A0A2V9CVJ8_9BACT)

HSP 1 Score: 161 bits (408), Expect = 4.020e-43
Identity = 79/143 (55.24%), Postives = 98/143 (68.53%), Query Frame = 1
Query:   40 SPNWDVRPLDGKIDAVIVHSTVINTLEGTERAFLDDKVRRVSAHYVVDRDGTVVQMVDERFTAWHAGVSELAGRTGVNDFSIGIEIVNLNDGKDPYTDAQYDAVARIIRDLRSRWEIPDSRVTSHANIARPVGRKSDPVGFDF 468
            SPN+D RP D +I  V++H++ + TL GT   F  D    VS H++V +DG V Q V     AWHAG+S+L G + VN+FS+GIE+VN NDG DPY+D QY+AVA II  LR   EIPD R+ SHA IA P GRKSDP GFDF
Sbjct:  690 SPNYDFRPSDSRITCVVLHASGLGTL-GTTINFFQDPNSMVSTHFIVGKDGRVFQTVPVERRAWHAGISQLDGMSDVNNFSVGIELVNRNDGTDPYSDLQYEAVALIIHQLRQSHEIPDGRIVSHAEIALPAGRKSDPEGFDF 831          
BLAST of mRNA_P-wetherbeei_contig10602.1.1 vs. uniprot
Match: UPI0019A687A0 (N-acetylmuramoyl-L-alanine amidase n=1 Tax=Chthonomonadaceae bacterium TaxID=2739509 RepID=UPI0019A687A0)

HSP 1 Score: 154 bits (389), Expect = 2.040e-42
Identity = 81/147 (55.10%), Postives = 102/147 (69.39%), Query Frame = 1
Query:   31 FVKSPNWDVRPLDGKIDAVIVHSTVINTLEGTERAFLDDKVRRVSAHYVVDRDGTVVQMVDERFTAWHAGVSELAGRTGVNDFSIGIEIVNLNDGKDPYTDAQYDAVARIIRDLRSRWEIPDSRVTSHANIARPVGRKSDPVGFDFA 471
            F+ SPN++ RP    ++ V+VH+TVI TLE T   FL  + + VSAH+VV RDG VVQMV      WHAGVS   G   +N+ S+GIE+VNLNDGKDP+   Q  AVA IIR LR  +EI DSR+ SH +IA P GRK+DP+GFDF+
Sbjct:   45 FIASPNFNERPKTKTVNCVVVHATVIPTLEQTVEHFLKVETQ-VSAHFVVGRDGRVVQMVPVEKRGWHAGVSRWMGEGDLNNTSVGIEMVNLNDGKDPFPTEQLGAVAGIIRFLRGYYEILDSRIVSHEDIAVPHGRKTDPLGFDFS 190          
BLAST of mRNA_P-wetherbeei_contig10602.1.1 vs. uniprot
Match: A0A4Q3V3D7_9BACT (1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD n=1 Tax=bacterium TaxID=1869227 RepID=A0A4Q3V3D7_9BACT)

HSP 1 Score: 145 bits (367), Expect = 4.090e-41
Identity = 76/153 (49.67%), Postives = 103/153 (67.32%), Query Frame = 1
Query:   13 GLHGVTFVKSPNWDVRPLDGKIDAVIVHSTVINTLEGTERAFLDDKVRRVSAHYVVDRDGTVVQMVDERFTAWHAGVSELA-GRTGVNDFSIGIEIVNLNDGKDPYTDAQYDAVARIIRDLRSRWEIPDSRVTSHANIARPVGRKSDPVGFDF 468
            G   + +++SPN+  RP +  +D ++V+STVI TLE T  AF      +VSAH+ + +DG+++Q +     AWHAGVSE   G  GVND+SIGIE+VNLNDGKDPY +AQ  A+  II  +R R+  P  ++ SH  IARPVGRKSDP GF +
Sbjct:   41 GYLQIWWIQSPNYGPRPKNAVVDTIVVYSTVIPTLEATTGAF-QRTASQVSAHFTIGKDGSIIQNLSTFDRAWHAGVSEDGEGHKGVNDYSIGIELVNLNDGKDPYPEAQLQALCGIIASMRRRF--PIRQIVSHEFIARPVGRKSDPKGFPW 190          
BLAST of mRNA_P-wetherbeei_contig10602.1.1 vs. uniprot
Match: A0A2V8L3M8_9BACT (N-acetylmuramoyl-L-alanine amidase domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8L3M8_9BACT)

HSP 1 Score: 140 bits (353), Expect = 1.240e-39
Identity = 72/145 (49.66%), Postives = 97/145 (66.90%), Query Frame = 1
Query:   40 SPNWDVRPLDGKIDAVIVHSTVINTLEGTERAFLDDKVRRVSAHYVVDRDGTVVQMVDERFTAWHAGVSELA-GRTGVNDFSIGIEIVNLNDGKDPYTDAQYDAVARIIRDLRSRWEIPDSRVTSHANIARPVGRKSDPVGFDFA 471
            SPN D RP D  ID V++H+TV+NTL+   + F  + V +VSAHY +DRDGT+   V ER  AWHAG S++  GRT VNDFSIGIE+VN NDG DP+ + Q +A+  +++ + +R+  P   +  H   A P GRKSDP+ FD A
Sbjct:   15 SPNCDERPDDIVIDTVVLHATVLNTLDEVIKHF-SNPVSKVSAHYTIDRDGTIAAHVPERGRAWHAGRSKVKDGRTNVNDFSIGIELVNQNDGMDPFPEQQIEAMRGLLKSILARY--PIKHIIPHYECAEPPGRKSDPIAFDLA 156          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10602.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V1WAH2_9BACT2.360e-5561.15N-acetylmuramoyl-L-alanine amidase domain-containi... [more]
A0A402D1V6_9BACT2.160e-5158.23Anhydro-N-acetylmuramyl-tripeptide amidase n=1 Tax... [more]
A0A847JXZ4_9BACT1.400e-4856.16N-acetylmuramoyl-L-alanine amidase domain-containi... [more]
UPI0019A722C43.010e-4654.73N-acetylmuramoyl-L-alanine amidase n=1 Tax=Fibrell... [more]
UPI0019A65D6D1.510e-4557.53N-acetylmuramoyl-L-alanine amidase n=1 Tax=Chthono... [more]
UPI0019BAAE253.070e-4553.64N-acetylmuramoyl-L-alanine amidase n=1 Tax=Akkerma... [more]
A0A2V9CVJ8_9BACT4.020e-4355.24N-acetylmuramoyl-L-alanine amidase domain-containi... [more]
UPI0019A687A02.040e-4255.10N-acetylmuramoyl-L-alanine amidase n=1 Tax=Chthono... [more]
A0A4Q3V3D7_9BACT4.090e-4149.671,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD... [more]
A0A2V8L3M8_9BACT1.240e-3949.66N-acetylmuramoyl-L-alanine amidase domain-containi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10602contigP-wetherbeei_contig10602:2..472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog661478.OP10G_4733
Preferred nameampD
PFAMsAmidase_2,PG_binding_1,SH3_3
Model size471
Max annot lvl2|Bacteria
KEGG rclassRC00064,RC00141
KEGG koko:K01447,ko:K03806,ko:K11066
KEGG ReactionR04112
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.2e-39
EggNOG OGsCOG3023@1|root,COG3023@2|Bacteria
EC3.5.1.28
DescriptionN-Acetylmuramoyl-L-alanine amidase
Cds size471
COG categoryV
BRITEko00000,ko01000,ko01011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185877.0585158-CDS-P-wetherbeei_contig10602:1..4721683185877.0585158-CDS-P-wetherbeei_contig10602:1..472Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10602 2..472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10602.1.1prot_P-wetherbeei_contig10602.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10602 2..472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10602.1.1

>prot_P-wetherbeei_contig10602.1.1 ID=prot_P-wetherbeei_contig10602.1.1|Name=mRNA_P-wetherbeei_contig10602.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
QELRGLHGVTFVKSPNWDVRPLDGKIDAVIVHSTVINTLEGTERAFLDDK
VRRVSAHYVVDRDGTVVQMVDERFTAWHAGVSELAGRTGVNDFSIGIEIV
NLNDGKDPYTDAQYDAVARIIRDLRSRWEIPDSRVTSHANIARPVGRKSD
PVGFDFA
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mRNA from alignment at P-wetherbeei_contig10602:2..472-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10602.1.1 ID=mRNA_P-wetherbeei_contig10602.1.1|Name=mRNA_P-wetherbeei_contig10602.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig10602:2..472- (Phaeothamnion wetherbeei SAG_119_79)
CAGGAGTTGCGAGGTCTGCACGGCGTTACGTTTGTAAAGTCGCCCAACTG GGATGTGCGCCCTCTCGACGGTAAAATCGACGCGGTGATTGTGCATTCGA CCGTCATCAATACTCTTGAGGGGACCGAGCGCGCTTTTCTCGACGATAAG GTGCGCCGCGTTTCTGCTCACTATGTGGTGGACCGCGATGGGACGGTCGT GCAGATGGTGGACGAGCGCTTTACCGCCTGGCACGCCGGCGTCTCGGAGC TGGCCGGACGAACCGGAGTGAATGACTTCAGTATCGGCATCGAGATCGTG AATTTAAATGACGGCAAAGACCCTTACACGGACGCTCAGTATGATGCCGT CGCCCGTATCATTCGCGATCTGCGCAGCCGATGGGAGATTCCCGACAGCC GCGTCACCTCGCACGCGAACATCGCTCGCCCCGTCGGCCGCAAATCCGAC CCCGTCGGATTCGATTTTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10602:2..472-

>mRNA_P-wetherbeei_contig10602.1.1 ID=mRNA_P-wetherbeei_contig10602.1.1|Name=mRNA_P-wetherbeei_contig10602.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig10602:2..472- (Phaeothamnion wetherbeei SAG_119_79)
CAGGAGTTGCGAGGTCTGCACGGCGTTACGTTTGTAAAGTCGCCCAACTG
GGATGTGCGCCCTCTCGACGGTAAAATCGACGCGGTGATTGTGCATTCGA
CCGTCATCAATACTCTTGAGGGGACCGAGCGCGCTTTTCTCGACGATAAG
GTGCGCCGCGTTTCTGCTCACTATGTGGTGGACCGCGATGGGACGGTCGT
GCAGATGGTGGACGAGCGCTTTACCGCCTGGCACGCCGGCGTCTCGGAGC
TGGCCGGACGAACCGGAGTGAATGACTTCAGTATCGGCATCGAGATCGTG
AATTTAAATGACGGCAAAGACCCTTACACGGACGCTCAGTATGATGCCGT
CGCCCGTATCATTCGCGATCTGCGCAGCCGATGGGAGATTCCCGACAGCC
GCGTCACCTCGCACGCGAACATCGCTCGCCCCGTCGGCCGCAAATCCGAC
CCCGTCGGATTCGATTTTGCC
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