mRNA_P-wetherbeei_contig1060.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1060.6.1
Unique NamemRNA_P-wetherbeei_contig1060.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1060.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1060contigP-wetherbeei_contig1060:5950..7024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size753
Hectar predicted targeting categoryother localisation
Exons2
Cds size603
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185876.902134-UTR-P-wetherbeei_contig1060:5949..60361683185876.902134-UTR-P-wetherbeei_contig1060:5949..6036Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1060 5950..6036 +
1683185876.9125223-UTR-P-wetherbeei_contig1060:6359..64211683185876.9125223-UTR-P-wetherbeei_contig1060:6359..6421Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1060 6360..6421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185876.921408-CDS-P-wetherbeei_contig1060:6421..70241683185876.921408-CDS-P-wetherbeei_contig1060:6421..7024Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1060 6422..7024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1060.6.1prot_P-wetherbeei_contig1060.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1060 6422..7024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1060.6.1

>prot_P-wetherbeei_contig1060.6.1 ID=prot_P-wetherbeei_contig1060.6.1|Name=mRNA_P-wetherbeei_contig1060.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=201bp
MQHPGIRKVLLLLPQIPFNKQNRVALLSATTPAVAHIAGLTGSIATRDRR
AASDGHAALCGSLRMRRGERVVHPGIIHRRPAFVRSAAVPVGTGITRGGS
DGGTGGQITREMWAREGSRHSIGGADSGRRPPSPGEMRQAAAVFASTNQR
RRRSFTSSGILAGLAQPRWQWRAEQEFSAGKGNLAPVKPATPKYYSGLYS
N
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mRNA from alignment at P-wetherbeei_contig1060:5950..7024+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1060.6.1 ID=mRNA_P-wetherbeei_contig1060.6.1|Name=mRNA_P-wetherbeei_contig1060.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1075bp|location=Sequence derived from alignment at P-wetherbeei_contig1060:5950..7024+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCTGACTCGAGCGGCTTATGTGGCTGCTCGTATCCGCTGGAGGAAACC
CACAACGGCGACTGTGTTGAAAGTGACCTCAGCACAGGTGGCGTTATCGG
CATTTGTGTCGTCAGGGCTGTGGTGCTGGGCTTGGCGGTTGTCGGCACCG
GCCTCTACCGCGAGGCCGAGGCGTATTACCACTGGAACATCCCATGTCCG
CCATCGAATGTGAACGCGGTAACAGCATGCGGATGGAGTGGCCGCTGGGC
CGCTGATTTCGGCCCTCGGATGCTTTGTCTGCTCCACTGTCATTGCCGCA
TGCCATTTAAATTGCTTTAGTCGGCGTTGATCGTTTGCTTTCGCGCCTGC
CCTCTCCCAGATTGCCAAAAATGTCACGTTTACTTTCCGTTTGTTATCCT
GAGGTTTCAGGCAGCTTGAGCATCAGCGGCATGGACAGCACCAGCGGCCA
TAGCAGATTTTCTTGAGGACGAATGCAACATCCCGGGATCAGAAAGGTGC
TGCTTTTGCTGCCCCAAATCCCTTTCAACAAGCAGAACCGCGTTGCCCTT
CTCAGCGCCACCACGCCCGCCGTCGCCCACATCGCCGGCCTCACCGGTTC
CATTGCTACGCGAGACCGGCGCGCTGCGAGCGACGGACATGCTGCTTTAT
GTGGGTCGCTCCGAATGCGACGCGGAGAACGGGTCGTCCATCCGGGCATC
ATTCACCGCCGTCCGGCGTTCGTCCGCAGTGCCGCGGTCCCAGTGGGGAC
CGGCATCACCCGGGGGGGCTCCGATGGAGGAACCGGCGGACAAATAACGC
GAGAAATGTGGGCGAGAGAAGGGAGTCGGCACAGCATCGGCGGTGCCGAC
TCAGGGCGACGACCACCGTCGCCGGGGGAAATGCGCCAGGCCGCAGCGGT
TTTCGCATCGACGAATCAACGGAGGCGCCGCAGCTTCACCAGCAGCGGCA
TTTTGGCCGGGCTGGCGCAGCCGCGATGGCAGTGGCGGGCCGAGCAAGAG
TTTTCTGCGGGAAAGGGAAATCTGGCTCCTGTCAAGCCTGCGACACCCAA
GTATTACAGCGGTTTGTATTCTAAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1060:5950..7024+

>mRNA_P-wetherbeei_contig1060.6.1 ID=mRNA_P-wetherbeei_contig1060.6.1|Name=mRNA_P-wetherbeei_contig1060.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=603bp|location=Sequence derived from alignment at P-wetherbeei_contig1060:5950..7024+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAACATCCCGGGATCAGAAAGGTGCTGCTTTTGCTGCCCCAAATCCC
TTTCAACAAGCAGAACCGCGTTGCCCTTCTCAGCGCCACCACGCCCGCCG
TCGCCCACATCGCCGGCCTCACCGGTTCCATTGCTACGCGAGACCGGCGC
GCTGCGAGCGACGGACATGCTGCTTTATGTGGGTCGCTCCGAATGCGACG
CGGAGAACGGGTCGTCCATCCGGGCATCATTCACCGCCGTCCGGCGTTCG
TCCGCAGTGCCGCGGTCCCAGTGGGGACCGGCATCACCCGGGGGGGCTCC
GATGGAGGAACCGGCGGACAAATAACGCGAGAAATGTGGGCGAGAGAAGG
GAGTCGGCACAGCATCGGCGGTGCCGACTCAGGGCGACGACCACCGTCGC
CGGGGGAAATGCGCCAGGCCGCAGCGGTTTTCGCATCGACGAATCAACGG
AGGCGCCGCAGCTTCACCAGCAGCGGCATTTTGGCCGGGCTGGCGCAGCC
GCGATGGCAGTGGCGGGCCGAGCAAGAGTTTTCTGCGGGAAAGGGAAATC
TGGCTCCTGTCAAGCCTGCGACACCCAAGTATTACAGCGGTTTGTATTCT
AAT
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