mRNA_P-wetherbeei_contig1060.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1060.2.1
Unique NamemRNA_P-wetherbeei_contig1060.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1060.2.1 vs. uniprot
Match: Q8QNA9_ESV1K (EsV-1-178 n=3 Tax=root TaxID=1 RepID=Q8QNA9_ESV1K)

HSP 1 Score: 86.3 bits (212), Expect = 6.890e-17
Identity = 46/94 (48.94%), Postives = 58/94 (61.70%), Query Frame = 3 
Query:   87 SVFMLGEFRTSKLCPGGCGGEIVDVQEGVRIRRCNNETAIEGLNPTGACPLFDHSLAGPGVAFTSDRNESAMVNMQLCVTCCLDDVGWPQHLRR 368
            +V ML EFRTSK+CPGGCGGE+ DVQ G R+R+C    ++   NP   CPLF+++     VAF  DR+ SA +N  L   C L    WP HL R
Sbjct:  607 NVGMLDEFRTSKMCPGGCGGEMTDVQGGQRVRQCTT-VSVGVENP---CPLFENA-----VAFRYDRDASATLNFCLAGYCGLVRKSWPTHLLR 691
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BLAST of mRNA_P-wetherbeei_contig1060.2.1 vs. uniprot
Match: A0A6H5L4M4_9PHAE (Resolvase/invertase-type recombinase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M4_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 9.080e-14
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 3 
Query:   87 SVFMLGEFRTSKLCPGGCGGEIVDVQEGVRIRRCNNETAIEGL-NPTGACPLFDHSLAGPGVAFTSDRNESAMVNMQLCVTCCL 335
            +V ML EFRTSK+CPGGCGGE+ DVQ G R+R+C   T   G+ NP   CPLF++     GVAF  DR+ SA +N  L   C L
Sbjct: 1234 NVGMLDEFRTSKMCPGGCGGEMTDVQGGQRVRQCT--TVCVGVENP---CPLFEN-----GVAFRCDRDASATLNFCLAGYCGL 1307
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BLAST of mRNA_P-wetherbeei_contig1060.2.1 vs. uniprot
Match: A0A6H5KSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF5_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 5.810e-5
Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = 3 
Query:   87 SVFMLGEFRTSKLCPGGCGGEIVDVQEGVRIRRCNNETAIEGLNPTGACPLFDHSLAGPGVAFTSDRNESAMVNMQ 314
            +V ML EFRTSK+CPGGCGGE+ DVQ G           I+ +     C     S+    VAF ++  ES MVN++
Sbjct:  320 NVGMLDEFRTSKMCPGGCGGEMTDVQGG-----------IDSVGEQ--CREIVTSV----VAFCTEHRESGMVNVR 378
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1060.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNA9_ESV1K6.890e-1748.94EsV-1-178 n=3 Tax=root TaxID=1 RepID=Q8QNA9_ESV1K[more]
A0A6H5L4M4_9PHAE9.080e-1452.38Resolvase/invertase-type recombinase catalytic dom... [more]
A0A6H5KSF5_9PHAE5.810e-542.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1060contigP-wetherbeei_contig1060:1244..1677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size436
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185876.9509845-CDS-P-wetherbeei_contig1060:1243..15821683185876.9509845-CDS-P-wetherbeei_contig1060:1243..1582Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1060 1244..1582 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185876.9609163-UTR-P-wetherbeei_contig1060:1582..16771683185876.9609163-UTR-P-wetherbeei_contig1060:1582..1677Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1060 1583..1677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1060.2.1prot_P-wetherbeei_contig1060.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1060 1244..1582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1060.2.1

>prot_P-wetherbeei_contig1060.2.1 ID=prot_P-wetherbeei_contig1060.2.1|Name=mRNA_P-wetherbeei_contig1060.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MLGEFRTSKLCPGGCGGEIVDVQEGVRIRRCNNETAIEGLNPTGACPLFD
HSLAGPGVAFTSDRNESAMVNMQLCVTCCLDDVGWPQHLRRSGGVGQVSS
GGGGPGGGLCGLQ
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mRNA from alignment at P-wetherbeei_contig1060:1244..1677-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1060.2.1 ID=mRNA_P-wetherbeei_contig1060.2.1|Name=mRNA_P-wetherbeei_contig1060.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=434bp|location=Sequence derived from alignment at P-wetherbeei_contig1060:1244..1677- (Phaeothamnion wetherbeei SAG_119_79)
TGATGTTGGGAGTTGGTCAGCGTACTCGTCTACATTGACAGGGCGGGGCG
GCGGCCCGAAGAAGGCGCTGGTGGCGTCGGCGGCACTCTGTCTTCATGCT
CGGGGAATTTCGGACTTCGAAGCTATGCCCGGGCGGCTGCGGCGGGGAGA
TTGTGGATGTGCAGGAGGGGGTCCGGATTCGACGGTGCAATAATGAAACC
GCAATCGAAGGCCTGAACCCCACTGGCGCGTGCCCGCTCTTCGACCACAG
CCTCGCCGGCCCAGGGGTGGCCTTCACCAGCGACCGCAACGAGAGCGCCA
TGGTCAACATGCAGCTGTGCGTCACGTGCTGCCTCGACGACGTCGGCTGG
CCGCAGCATCTCAGGCGGAGCGGCGGTGTCGGCCAGGTCAGCAGCGGCGG
CGGTGGTCCGGGCGGCGGTCTCTGCGGCTTGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1060:1244..1677-

>mRNA_P-wetherbeei_contig1060.2.1 ID=mRNA_P-wetherbeei_contig1060.2.1|Name=mRNA_P-wetherbeei_contig1060.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig1060:1244..1677- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGGGGAATTTCGGACTTCGAAGCTATGCCCGGGCGGCTGCGGCGG
GGAGATTGTGGATGTGCAGGAGGGGGTCCGGATTCGACGGTGCAATAATG
AAACCGCAATCGAAGGCCTGAACCCCACTGGCGCGTGCCCGCTCTTCGAC
CACAGCCTCGCCGGCCCAGGGGTGGCCTTCACCAGCGACCGCAACGAGAG
CGCCATGGTCAACATGCAGCTGTGCGTCACGTGCTGCCTCGACGACGTCG
GCTGGCCGCAGCATCTCAGGCGGAGCGGCGGTGTCGGCCAGGTCAGCAGC
GGCGGCGGTGGTCCGGGCGGCGGTCTCTGCGGCTTGCAG
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