mRNA_P-wetherbeei_contig10599.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10599.1.1
Unique NamemRNA_P-wetherbeei_contig10599.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10599.1.1 vs. uniprot
Match: A0A7S2UZ40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ40_9STRA)

HSP 1 Score: 144 bits (363), Expect = 7.070e-43
Identity = 71/90 (78.89%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:    1 QTSELLCENNMQILKLLSEEVFDFSKDQMTTVKIKSMKESLNDQFAQVYQLAEFIMEHSQRPALLNVTLQTLQRFLTWIPLGYIFETQLI 270
            +TSE+LCENNMQILKLLSEEVFDFSKDQMTT KIK+MKESLN++FA++YQL EFI+  S RP+LL VTLQTL RFL+WIPLGYIFET L+
Sbjct:   16 KTSEILCENNMQILKLLSEEVFDFSKDQMTTAKIKTMKESLNEEFAKIYQLCEFILGASNRPSLLRVTLQTLHRFLSWIPLGYIFETTLV 105
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BLAST of mRNA_P-wetherbeei_contig10599.1.1 vs. uniprot
Match: A0A7S2VYH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYH7_9STRA)

HSP 1 Score: 145 bits (365), Expect = 5.890e-41
Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:    1 QTSELLCENNMQILKLLSEEVFDFSKDQMTTVKIKSMKESLNDQFAQVYQLAEFIMEHSQRPALLNVTLQTLQRFLTWIPLGYIFETQLI 270
            +TSE+LCENNMQILKLLSEEVFDFS DQM T K+K MKESLN +FA +Y L EFI+EHSQRP+LL VTLQTLQRFLTWIPLG+IF+T LI
Sbjct:  172 KTSEILCENNMQILKLLSEEVFDFSSDQMVTEKVKQMKESLNGEFASIYHLCEFILEHSQRPSLLKVTLQTLQRFLTWIPLGFIFQTPLI 261
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BLAST of mRNA_P-wetherbeei_contig10599.1.1 vs. uniprot
Match: A0A7S2VAN0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAN0_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.630e-40
Identity = 68/85 (80.00%), Postives = 78/85 (91.76%), Query Frame = 1 
Query:   16 LCENNMQILKLLSEEVFDFSKDQMTTVKIKSMKESLNDQFAQVYQLAEFIMEHSQRPALLNVTLQTLQRFLTWIPLGYIFETQLI 270
            +CENNMQILKLLSEEVFDFS+DQM T K+KSMKESLN +F+Q+YQL EF++EHSQ+P+LL VTLQTLQRFLTWIPLGYIF T LI
Sbjct:    1 MCENNMQILKLLSEEVFDFSRDQMVTDKVKSMKESLNGEFSQIYQLCEFVLEHSQKPSLLRVTLQTLQRFLTWIPLGYIFRTTLI 85
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BLAST of mRNA_P-wetherbeei_contig10599.1.1 vs. uniprot
Match: A0A7S1YZM0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZM0_TRICV)

HSP 1 Score: 149 bits (377), Expect = 3.970e-40
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 QTSELLCENNMQILKLLSEEVFDFSKDQMTTVKIKSMKESLNDQFAQVYQLAEFIMEHSQRPALLNVTLQTLQRFLTWIPLGYIFETQLI 270
            +TSE+LCENNMQILKLLSEEVFDFS+DQM T K+  MKESLN++FAQ+YQL EFI+EHSQRP+LL VTLQTLQRFLTWIPLG+IF+TQLI
Sbjct:  166 KTSEILCENNMQILKLLSEEVFDFSRDQMVTEKVIKMKESLNNEFAQIYQLCEFILEHSQRPSLLRVTLQTLQRFLTWIPLGFIFQTQLI 255
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BLAST of mRNA_P-wetherbeei_contig10599.1.1 vs. uniprot
Match: A0A7S1YZH3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZH3_TRICV)

HSP 1 Score: 149 bits (377), Expect = 5.590e-40
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 QTSELLCENNMQILKLLSEEVFDFSKDQMTTVKIKSMKESLNDQFAQVYQLAEFIMEHSQRPALLNVTLQTLQRFLTWIPLGYIFETQLI 270
            +TSE+LCENNMQILKLLSEEVFDFS+DQM T K+  MKESLN++FAQ+YQL EFI+EHSQRP+LL VTLQTLQRFLTWIPLG+IF+TQLI
Sbjct:  166 KTSEILCENNMQILKLLSEEVFDFSRDQMVTEKVIKMKESLNNEFAQIYQLCEFILEHSQRPSLLRVTLQTLQRFLTWIPLGFIFQTQLI 255
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BLAST of mRNA_P-wetherbeei_contig10599.1.1 vs. uniprot
Match: B7GEG3_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GEG3_PHATC)

HSP 1 Score: 149 bits (376), Expect = 7.620e-40
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:    1 QTSELLCENNMQILKLLSEEVFDFSKDQMTTVKIKSMKESLNDQFAQVYQLAEFIMEHSQRPALLNVTLQTLQRFLTWIPLGYIFETQLI 270
            +TSE+LCENNMQILKLLSEEVFDFS+DQM T K+K MKESLN +FAQVYQL EF++EHSQRP+LL VTLQTLQRFLTWIPLG+IF+T LI
Sbjct:  153 KTSEVLCENNMQILKLLSEEVFDFSRDQMVTEKVKRMKESLNGEFAQVYQLCEFVLEHSQRPSLLRVTLQTLQRFLTWIPLGFIFQTNLI 242
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BLAST of mRNA_P-wetherbeei_contig10599.1.1 vs. uniprot
Match: K0S2Q9_THAOC (Importin N-terminal domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S2Q9_THAOC)

HSP 1 Score: 148 bits (373), Expect = 1.940e-39
Identity = 70/90 (77.78%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 QTSELLCENNMQILKLLSEEVFDFSKDQMTTVKIKSMKESLNDQFAQVYQLAEFIMEHSQRPALLNVTLQTLQRFLTWIPLGYIFETQLI 270
            +TSELLCENNM+ILKLLSEE+FDFS+DQM T K+KS+KESLN++F+ +YQL EF++EHSQRPALL VTLQTLQRFLTWIPLGYIF+T L+
Sbjct:  243 KTSELLCENNMKILKLLSEEIFDFSRDQMVTDKVKSLKESLNNEFSAIYQLCEFVLEHSQRPALLRVTLQTLQRFLTWIPLGYIFQTNLV 332
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BLAST of mRNA_P-wetherbeei_contig10599.1.1 vs. uniprot
Match: A0A6H5JJK2_9PHAE (CRM1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK2_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 6.620e-39
Identity = 72/90 (80.00%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    1 QTSELLCENNMQILKLLSEEVFDFSKDQMTTVKIKSMKESLNDQFAQVYQLAEFIMEHSQRPALLNVTLQTLQRFLTWIPLGYIFETQLI 270
            +T+E+LCENNMQILKLLSEEVFDFSKDQMTT KIK+MKESLND+FA++Y+L EFI++ SQ+ +LLN TLQTLQRFLTWIPLGYIFE QLI
Sbjct:   10 KTNEVLCENNMQILKLLSEEVFDFSKDQMTTAKIKTMKESLNDEFAKIYELCEFILDRSQKASLLNGTLQTLQRFLTWIPLGYIFERQLI 99
[Close]
BLAST of mRNA_P-wetherbeei_contig10599.1.1 vs. uniprot
Match: B8C129_THAPS (Exportin1 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C129_THAPS)

HSP 1 Score: 146 bits (369), Expect = 6.700e-39
Identity = 71/90 (78.89%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:    1 QTSELLCENNMQILKLLSEEVFDFSKDQMTTVKIKSMKESLNDQFAQVYQLAEFIMEHSQRPALLNVTLQTLQRFLTWIPLGYIFETQLI 270
            +TSE+LCENNMQILKLLSEEVFDFS+DQM T K+K +KESLN +FA +Y L EFI+EHSQRP+LL VTLQTLQRFLTWIPLG+IF+TQLI
Sbjct:  154 KTSEVLCENNMQILKLLSEEVFDFSRDQMVTEKVKKLKESLNSEFAAIYHLCEFILEHSQRPSLLKVTLQTLQRFLTWIPLGFIFQTQLI 243
[Close]
BLAST of mRNA_P-wetherbeei_contig10599.1.1 vs. uniprot
Match: A0A6V1W3N7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1W3N7_HETAK)

HSP 1 Score: 141 bits (355), Expect = 9.190e-39
Identity = 70/88 (79.55%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:    7 SELLCENNMQILKLLSEEVFDFSKDQMTTVKIKSMKESLNDQFAQVYQLAEFIMEHSQRPALLNVTLQTLQRFLTWIPLGYIFETQLI 270
            SE+LCENNMQILKLLSEEVFDFSKD MTT K K+MKESLN++FA+VYQL EFI+E SQRP+LL VTL TLQRFL+WIPLGY+FET L+
Sbjct:  152 SEVLCENNMQILKLLSEEVFDFSKDAMTTAKTKTMKESLNEEFAKVYQLCEFILEASQRPSLLKVTLTTLQRFLSWIPLGYVFETGLV 239
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10599.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UZ40_9STRA7.070e-4378.89Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2VYH7_9STRA5.890e-4178.89Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2VAN0_9STRA2.630e-4080.00Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S1YZM0_TRICV3.970e-4081.11Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1YZH3_TRICV5.590e-4081.11Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
B7GEG3_PHATC7.620e-4081.11Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
K0S2Q9_THAOC1.940e-3977.78Importin N-terminal domain-containing protein n=1 ... [more]
A0A6H5JJK2_9PHAE6.620e-3980.00CRM1_C domain-containing protein n=1 Tax=Ectocarpu... [more]
B8C129_THAPS6.700e-3978.89Exportin1 n=1 Tax=Thalassiosira pseudonana TaxID=3... [more]
A0A6V1W3N7_HETAK9.190e-3979.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10599contigP-wetherbeei_contig10599:149..1025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr24186
PFAMsCRM1_C,IBN_N,Xpo1
Model size276
Max annot lvl2836|Bacillariophyta
KEGG koko:K14290
KEGG TC1.I.1
KEGG Pathwayko03008,ko03013,ko04013,ko05164,ko05166,ko05169,map03008,map03013,map04013,map05164,map05166,map05169
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.7e-35
EggNOG OGsCOG5101@1|root,KOG2020@2759|Eukaryota,2XBJY@2836|Bacillariophyta
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-12_004630.2
DescriptionCRM1 C terminal
Cds size246
COG categoryUY
BRITEko00000,ko00001,ko03009,ko03016,ko03019,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185876.6276815-UTR-P-wetherbeei_contig10599:148..1781683185876.6276815-UTR-P-wetherbeei_contig10599:148..178Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10599 149..178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185876.6367853-CDS-P-wetherbeei_contig10599:178..2891683185876.6367853-CDS-P-wetherbeei_contig10599:178..289Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10599 179..289 +
1683185876.6443985-CDS-P-wetherbeei_contig10599:890..10251683185876.6443985-CDS-P-wetherbeei_contig10599:890..1025Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10599 891..1025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10599.1.1prot_P-wetherbeei_contig10599.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10599 179..1025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10599.1.1

>prot_P-wetherbeei_contig10599.1.1 ID=prot_P-wetherbeei_contig10599.1.1|Name=mRNA_P-wetherbeei_contig10599.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
MQILKLLSEEVFDFSKDQMTTVKIKSMKESLNDQFAQVYQLAEFIMEHSQ
RPALLNVTLQTLQRFLTWIPLGYIFETQLIR*
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mRNA from alignment at P-wetherbeei_contig10599:149..1025+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10599.1.1 ID=mRNA_P-wetherbeei_contig10599.1.1|Name=mRNA_P-wetherbeei_contig10599.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=877bp|location=Sequence derived from alignment at P-wetherbeei_contig10599:149..1025+ (Phaeothamnion wetherbeei SAG_119_79)
CAGACGAGTGAGCTGCTGTGCGAGAACAACATGCAGATCCTCAAGCTGCT
GTCGGAAGAGGTCTTTGACTTCTCCAAGGACCAGATGACCACCGTCAAAA
TTAAGAGCATGAAGGAGAGCCTCAACGACCAGTTTGCGCAGGTGCGTTTT
TGCGGGGGGCAGAGAGAGGAAGGGAAGGGGAGGGAAGGGAAGCGGGCTAC
CTTCTTTTACCGCCGAGATGTTCGTTGGCGGCTTTGGAGACTGGACGGTG
ATATAGCGGTGTCACGGCCGCTCGGTGTCGAGTCAAGGGTCGCTGTTCGC
AAAGATGAAGCCAACCGCCCAATCCCTTTCGTCCCTCATTCTCTCTGATG
TGCCTGGACGGTGGCGGCGGCGGCGGTGGCCCTTCGGCGGGTGCATGACT
GCAATGGCGGCGATGGCGGCGGCAATTTTTGCGGCGACGGCGGTGACTGC
GGTGGCGACTGTATGGCGGCGGCCGCCACACTGCGACGCACGACTATGCT
GCGGATGGCAACGGCTGCTTGTTGGCGGCTGCGGTGGCGGCGGCCCCTGC
GTATCGGCGACGGCGACAATTGCGGCGGGTTCTTTGTCGTCGGCTTGGAC
TGCTGCTTTTGCGACTACTGCGTCGGCGGTTCCGTCAATGTGTCGGCGGC
AATGGCGGCTGCGCTGGCACACGCCCTCAACAAACAAACGGCTCTGGTTT
CCGGTCGGGCCGTCTGCCTCGCTCCCCCATCGGGAAGCGCAGGTGTACCA
GCTGGCGGAATTCATCATGGAACACAGCCAGCGGCCAGCCCTGCTCAACG
TGACGCTCCAGACGTTGCAGCGCTTTCTGACGTGGATCCCGCTCGGCTAC
ATCTTCGAGACTCAACTCATCAGGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10599:149..1025+

>mRNA_P-wetherbeei_contig10599.1.1 ID=mRNA_P-wetherbeei_contig10599.1.1|Name=mRNA_P-wetherbeei_contig10599.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig10599:149..1025+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGATCCTCAAGCTGCTGTCGGAAGAGGTCTTTGACTTCTCCAAGGA
CCAGATGACCACCGTCAAAATTAAGAGCATGAAGGAGAGCCTCAACGACC
AGTTTGCGCAGGTGTACCAGCTGGCGGAATTCATCATGGAACACAGCCAG
CGGCCAGCCCTGCTCAACGTGACGCTCCAGACGTTGCAGCGCTTTCTGAC
GTGGATCCCGCTCGGCTACATCTTCGAGACTCAACTCATCAGGTAA
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