mRNA_P-wetherbeei_contig10590.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10590.1.1
Unique NamemRNA_P-wetherbeei_contig10590.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10590.1.1 vs. uniprot
Match: A0A836CJ23_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ23_9STRA)

HSP 1 Score: 207 bits (527), Expect = 3.040e-59
Identity = 98/157 (62.42%), Postives = 116/157 (73.89%), Query Frame = 1
Query:   37 QAGDGEAVRDGEECRLCLRQAYRRKCCSEFYCSDCYFKAGVCPSCGKAVERRAQFQRVPRDPGLWPVAAGYAVSLLVVVSALAVVAVAIANDRTLPATVIGHRCYGFFTECSSEDACVAFPDSLAEGLLPPAHEWEACTLETVNKMYGSYCVYDKQV 507
            +AG+ EA RDGEECR+CLRQ +RRKCC EF+CS CYF+AG CP+C    +RR +  R PRDPG+ PV  GYAVS LV ++ALAV AV  ANDRTLP TV G+RCYGFF ECS EDACV      A G+      W+ CTL+TVNK+YG YCV+DKQV
Sbjct:  195 EAGEAEA-RDGEECRVCLRQGFRRKCCGEFFCSACYFRAGACPACAAPAQRRVRLTRTPRDPGVAPVLLGYAVSALVCLAALAVAAVVAANDRTLPRTVSGYRCYGFFPECSGEDACVEVEGGAARGMPDALVSWKQCTLQTVNKLYGQYCVHDKQV 350          
BLAST of mRNA_P-wetherbeei_contig10590.1.1 vs. uniprot
Match: A0A6H5KNS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNS6_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 2.490e-47
Identity = 80/151 (52.98%), Postives = 101/151 (66.89%), Query Frame = 1
Query:   58 VRDGEECRLCLRQAYRRKCCSEFYCSDCYFKAGVCPSCGKAVERRAQFQRVPRDPGLWPVAAGYAVSLLVVVSALAVVAVAIANDRTLPATVIGHRCYGFFTECSSEDACVAFPDSLAEGLLPPAHEWEACTLET-VNKMYGSYCVYDKQV 507
            VRDGEECR CLRQ + RKCC EFYCS CYF+ G CPSC    E+R ++QR+PRDPG+ PV  G+  ++LV +  LA V+VAIAN+  +  TV    CYGFF  C+    CVA+        L P  EW AC  ET VNK+YGS+CV+D++V
Sbjct:   99 VRDGEECRKCLRQGFARKCCGEFYCSSCYFQTGHCPSCHVPAEKRIEYQRIPRDPGVVPVLVGFFATILVCLVTLAGVSVAIANNSAVIKTVFDQTCYGFFPSCTPGAKCVAYDSGDIGNGLEPITEWSACEDETTVNKIYGSFCVFDEEV 249          
BLAST of mRNA_P-wetherbeei_contig10590.1.1 vs. uniprot
Match: D7FIM3_ECTSI (Reelin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIM3_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 8.550e-44
Identity = 79/151 (52.32%), Postives = 101/151 (66.89%), Query Frame = 1
Query:   58 VRDGEECRLCLRQAYRRKCCSEFYCSDCYFKAGVCPSCGKAVERRAQFQRVPRDPGLWPVAAGYAVSLLVVVSALAVVAVAIANDRTLPATVIGHRCYGFFTECSSEDACVAFPDSLAEGLLPPAHEWEACTLET-VNKMYGSYCVYDKQV 507
            VRDGEECR CLRQ + RKCC EFYCS CYF+ G CPSC    E+R ++QR+PRDPG+ PV  G+  ++LV +  LA V+VAIA++  +  TV    CYGFF  C+    CVA+        L P  EW AC  ET VNK+YGS+CV+D++V
Sbjct:  218 VRDGEECRKCLRQGFARKCCGEFYCSSCYFQTGHCPSCHVLAEKRIEYQRIPRDPGVVPVLVGFFATVLVCLVTLAGVSVAIASNSAVIKTVFDQTCYGFFPSCTPGPKCVAYDSGDIGNGLEPITEWSACEDETTVNKIYGSFCVFDEEV 368          
BLAST of mRNA_P-wetherbeei_contig10590.1.1 vs. uniprot
Match: A0A7S2BHZ7_9STRA (Reelin n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BHZ7_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.650e-34
Identity = 64/149 (42.95%), Postives = 91/149 (61.07%), Query Frame = 1
Query:   55 AVRDGEECRLCLRQAYRRKCCSEFYCSDCYFKAGVCPSCGKAVERRAQFQRVPRDPGLWPVAAGYAVSLLVVVSALAVVAVAIANDRTLPATVIGHRCYGFFTECSSEDACVAFPDSLAEGLLPPAHEWEACTLETVNKMYGSYCVYDK 501
            A ++ EECR CL   +RRKCC E+YC+ CYF+ G CP C +    R        DPG WPV  G+ +S+ V ++ALA+  + + +D+  P TV GHRCYG F +C  +  C+     + EGL+  A +W+ C + TVNK+YG  C+YDK
Sbjct:   78 AEQENEECRKCLEPGFRRKCCKEYYCNSCYFETGNCPGCDRLSAPRGLGLFGLDDPGAWPVIYGWCLSVFVTLAALALFVMIVVSDQLNPRTVFGHRCYGLFPQCD-QIQCIELGGPINEGLVTQA-DWKYCDMNTVNKVYGGTCLYDK 224          
BLAST of mRNA_P-wetherbeei_contig10590.1.1 vs. uniprot
Match: A0A7S4DJ09_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJ09_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 2.120e-11
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   49 GEAVRDGEECRLCLRQAYRRKCCSEFYCSDCYFKAGVCPSCGKAVERR---AQFQRVPRDPGLWP 234
            G+  R+GEECR+CL Q ++R CC EFYC+ CY+  G CPSC ++V+ +   A    +  +PG+ P
Sbjct:  142 GKFSREGEECRICLAQGFKRGCCGEFYCNACYYNTGYCPSCRQSVKNQPLAAGSGLLTHNPGIPP 206          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10590.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CJ23_9STRA3.040e-5962.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KNS6_9PHAE2.490e-4752.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIM3_ECTSI8.550e-4452.32Reelin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A7S2BHZ7_9STRA1.650e-3442.95Reelin n=1 Tax=Florenciella parvula TaxID=236787 R... [more]
A0A7S4DJ09_HETAK2.120e-1144.62Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10590contigP-wetherbeei_contig10590:1479..1985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog159749.K0T1J4
PFAMsSel1,zf-MYND
Model size507
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.05e-19
EggNOG OGsCOG0790@1|root,KOG1550@2759|Eukaryota
DescriptionERAD pathway
Cds size507
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185876.3161714-CDS-P-wetherbeei_contig10590:1478..19851683185876.3161714-CDS-P-wetherbeei_contig10590:1478..1985Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10590 1479..1985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10590.1.1prot_P-wetherbeei_contig10590.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10590 1479..1985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10590.1.1

>prot_P-wetherbeei_contig10590.1.1 ID=prot_P-wetherbeei_contig10590.1.1|Name=mRNA_P-wetherbeei_contig10590.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
GPGKGRWGAGSGQAGDGEAVRDGEECRLCLRQAYRRKCCSEFYCSDCYFK
AGVCPSCGKAVERRAQFQRVPRDPGLWPVAAGYAVSLLVVVSALAVVAVA
IANDRTLPATVIGHRCYGFFTECSSEDACVAFPDSLAEGLLPPAHEWEAC
TLETVNKMYGSYCVYDKQV
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mRNA from alignment at P-wetherbeei_contig10590:1479..1985+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10590.1.1 ID=mRNA_P-wetherbeei_contig10590.1.1|Name=mRNA_P-wetherbeei_contig10590.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig10590:1479..1985+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCCCGGCAAGGGCCGCTGGGGCGCCGGCTCCGGCCAGGCCGGCGACGG CGAAGCCGTCCGCGACGGGGAAGAATGCCGCCTCTGCCTGCGGCAAGCAT ACCGGCGAAAGTGCTGCAGCGAGTTCTACTGCAGCGACTGCTACTTCAAG GCTGGCGTTTGCCCCAGCTGTGGCAAGGCCGTCGAGCGGCGCGCCCAGTT CCAGCGGGTGCCGCGCGACCCTGGGTTGTGGCCTGTGGCGGCCGGCTATG CCGTCTCGCTGCTGGTGGTGGTGTCGGCGCTGGCCGTGGTGGCGGTGGCC ATCGCCAACGACCGAACACTGCCGGCAACTGTCATCGGGCACCGCTGCTA CGGCTTCTTTACGGAGTGCAGCTCGGAGGACGCGTGCGTGGCGTTCCCGG ACTCACTGGCGGAGGGTTTGCTGCCGCCGGCGCACGAGTGGGAGGCGTGT ACGCTGGAGACGGTAAACAAGATGTACGGCAGCTACTGCGTCTATGACAA GCAGGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10590:1479..1985+

>mRNA_P-wetherbeei_contig10590.1.1 ID=mRNA_P-wetherbeei_contig10590.1.1|Name=mRNA_P-wetherbeei_contig10590.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig10590:1479..1985+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCCCGGCAAGGGCCGCTGGGGCGCCGGCTCCGGCCAGGCCGGCGACGG
CGAAGCCGTCCGCGACGGGGAAGAATGCCGCCTCTGCCTGCGGCAAGCAT
ACCGGCGAAAGTGCTGCAGCGAGTTCTACTGCAGCGACTGCTACTTCAAG
GCTGGCGTTTGCCCCAGCTGTGGCAAGGCCGTCGAGCGGCGCGCCCAGTT
CCAGCGGGTGCCGCGCGACCCTGGGTTGTGGCCTGTGGCGGCCGGCTATG
CCGTCTCGCTGCTGGTGGTGGTGTCGGCGCTGGCCGTGGTGGCGGTGGCC
ATCGCCAACGACCGAACACTGCCGGCAACTGTCATCGGGCACCGCTGCTA
CGGCTTCTTTACGGAGTGCAGCTCGGAGGACGCGTGCGTGGCGTTCCCGG
ACTCACTGGCGGAGGGTTTGCTGCCGCCGGCGCACGAGTGGGAGGCGTGT
ACGCTGGAGACGGTAAACAAGATGTACGGCAGCTACTGCGTCTATGACAA
GCAGGTC
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