mRNA_P-wetherbeei_contig1059.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1059.3.1
Unique NamemRNA_P-wetherbeei_contig1059.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1059.3.1 vs. uniprot
Match: B5D5P1_SIPNU (Strombine dehydrogenase n=1 Tax=Sipunculus nudus TaxID=6446 RepID=B5D5P1_SIPNU)

HSP 1 Score: 144 bits (362), Expect = 1.280e-38
Identity = 68/144 (47.22%), Postives = 99/144 (68.75%), Query Frame = 1
Query:    7 KPDLDLSTVMPIEEFFHKSYAGDIGDESSLGAALRTNKGYQGLKHTMQPAPAPKEVVSAAGAGGYVADWNARYMTEDIPFGLVSIKGIAEVAGVPTPTIDEVIAWSQERMGKEYISSTGSLTGKDIGECRCPQAHGWNSLADAL 438
            +PD D+STV+ I +++ + Y GDIGDE++L   L+TN GY+GLKH M+P          AG G +  ++N RY+TEDIP+GL  I+GI E+ GV TPTID+VI W Q++MG+E++   G   GKD+ + RCPQ +G +SL + +
Sbjct:  264 RPDADMSTVVHICDWYKRVYKGDIGDETNLTTILQTNNGYKGLKHPMEP----------AGDGLFKVNYNYRYLTEDIPYGLAVIRGIGELVGVNTPTIDKVITWCQDKMGREFLKD-GKFVGKDLEKARCPQHYGLHSLDEII 396          
BLAST of mRNA_P-wetherbeei_contig1059.3.1 vs. uniprot
Match: A0A6V1WY66_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WY66_HETAK)

HSP 1 Score: 143 bits (360), Expect = 7.380e-38
Identity = 67/144 (46.53%), Postives = 96/144 (66.67%), Query Frame = 1
Query:    7 KPDLDLSTVMPIEEFFHKSYAGDIGDESSLGAALRTNKGYQGLKHTMQPAPAPKEVVSAAGAGGYVADWNARYMTEDIPFGLVSIKGIAEVAGVPTPTIDEVIAWSQERMGKEYISSTGSLTGKDIGECRCPQAHGWNSLADAL 438
            +P+LDLS V+ + + F   Y   +GD +++   LRTN GY GLK  M+  PA +        GG+V ++N RY TEDIP+GLV +KG+AE+ GV TPT+D +I+W QE+MGKEY+ + G L GKD+GE R PQ +G  ++ D +
Sbjct:  323 RPELDLSAVVSLYDAFLAIYGDSVGDPTNIMTCLRTNPGYAGLKIPMKELPAEE-------GGGFVPNFNMRYYTEDIPYGLVVLKGVAEIVGVVTPTVDTLISWCQEKMGKEYLDAGGRLAGKDLGETRAPQNYGLTTVEDLV 459          
BLAST of mRNA_P-wetherbeei_contig1059.3.1 vs. uniprot
Match: A0A9I9_MARSA (Strombine/alanopine dehydrogenase n=1 Tax=Marphysa sanguinea TaxID=167828 RepID=A0A9I9_MARSA)

HSP 1 Score: 134 bits (337), Expect = 6.070e-35
Identity = 71/144 (49.31%), Postives = 95/144 (65.97%), Query Frame = 1
Query:    7 KPDLDLSTVMPIEEFFHKSYAGDIGDESSLGAALRTNKGYQGLKHTMQPAPAPKEVVSAAGAGGYVADWNARYMTEDIPFGLVSIKGIAEVAGVPTPTIDEVIAWSQERMGKEYISSTGSLTGKDIGECRCPQAHGWNSLADAL 438
            +P +DL+ V  I +++ + YA DIGD++SL   +RTN  Y GL H     P  K        G +V D+  RY+ EDIPFGL+  KGIAEVAGVPTPTID VI+W+Q++MGKEYI + G L GKD+   RCPQ +G  ++ DA+
Sbjct:  265 RPQVDLTNVAHIWQWYLRVYADDIGDKTSLFTTIRTNAAYSGLTH-----PTTK-----TDDGKFVPDFKHRYLMEDIPFGLLVSKGIAEVAGVPTPTIDSVISWAQQKMGKEYIVN-GKLAGKDVSSTRCPQRYGLTTV-DAI 396          
BLAST of mRNA_P-wetherbeei_contig1059.3.1 vs. uniprot
Match: UPI001E1D7AF0 (opine dehydrogenase-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D7AF0)

HSP 1 Score: 133 bits (335), Expect = 1.340e-34
Identity = 70/142 (49.30%), Postives = 90/142 (63.38%), Query Frame = 1
Query:    7 KPDLDLSTVMPIEEFFHKSYAGDIGDESSLGAALRTNKGYQGLKHTMQPAPAPKEVVSAAGAGGYVADWNARYMTEDIPFGLVSIKGIAEVAGVPTPTIDEVIAWSQERMGKEYISSTGSLTGKDIGECRCPQAHGWNSLAD 432
            K DLD+S V+ I E++ + Y   I D SSL A +++N  Y GL H M+              GG+V D+  RY+ EDIPFGLV IKGIAE  GV TPTID VIAW QE++GKEYI  + +LTGKD+   R PQA+ + +L D
Sbjct:  267 KNDLDMSEVIHIYEWYKEYYKDQISDNSSLKACMKSNGAYDGLVHPMKKVE-----------GGFVPDFRYRYLAEDIPFGLVVIKGIAECVGVKTPTIDTVIAWGQEKLGKEYIDGS-ALTGKDVATTRAPQAYEFKTLED 396          
BLAST of mRNA_P-wetherbeei_contig1059.3.1 vs. uniprot
Match: A0A8B6CKG9_MYTGA (Octopine_DH domain-containing protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A8B6CKG9_MYTGA)

HSP 1 Score: 131 bits (330), Expect = 8.680e-34
Identity = 66/140 (47.14%), Postives = 92/140 (65.71%), Query Frame = 1
Query:   19 DLSTVMPIEEFFHKSYAGDIGDESSLGAALRTNKGYQGLKHTMQPAPAPKEVVSAAGAGGYVADWNARYMTEDIPFGLVSIKGIAEVAGVPTPTIDEVIAWSQERMGKEYISSTGSLTGKDIGECRCPQAHGWNSLADAL 438
            D+S V+ I +++   Y   + D+SSL  A+RTNK Y GL H M P             G +V D+N RY +ED+PFGLV +KGIAE+AGV TPTID++IAW+Q ++ KEYI  +  LTGKDI   R PQ++G+ +L+D +
Sbjct:  275 DMSEVIHIFDWYKIYYKDQVADKSSLMMAMRTNKAYDGLVHPMTPTE----------DGKFVPDFNYRYTSEDVPFGLVVMKGIAEIAGVETPTIDKIIAWAQTKLDKEYIVGS-KLTGKDIASARAPQSYGFETLSDGI 403          
BLAST of mRNA_P-wetherbeei_contig1059.3.1 vs. uniprot
Match: UPI001458C6C1 (opine dehydrogenase-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458C6C1)

HSP 1 Score: 131 bits (330), Expect = 9.230e-34
Identity = 64/142 (45.07%), Postives = 95/142 (66.90%), Query Frame = 1
Query:    7 KPDLDLSTVMPIEEFFHKSYAGDIGDESSLGAALRTNKGYQGLKHTMQPAPAPKEVVSAAGAGGYVADWNARYMTEDIPFGLVSIKGIAEVAGVPTPTIDEVIAWSQERMGKEYISSTGSLTGKDIGECRCPQAHGWNSLAD 432
            + ++D+S V+ I +++ + Y  +I D S L  A++TNK Y GL H       P + V+  G+ G+V D+N RY+ ED+PFGLV +KGIA++AGV TPTID +I W+Q+++ KEYI     L GKDIGE R PQ +G+ ++ D
Sbjct:  285 RKNIDMSAVIHILDWYREYYCHEISDHSCLKNAMQTNKAYDGLLH-------PMKQVATKGSEGFVPDFNYRYIREDVPFGLVVMKGIAQIAGVDTPTIDIIIEWAQKQLNKEYIVGN-RLNGKDIGETRAPQVYGFETIED 418          
BLAST of mRNA_P-wetherbeei_contig1059.3.1 vs. uniprot
Match: A0A6J8EAT8_MYTCO (Octopine dehydrogenase,Opine dehydrogenase,Tauropine dehydrogenase n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8EAT8_MYTCO)

HSP 1 Score: 124 bits (312), Expect = 1.310e-33
Identity = 63/144 (43.75%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    7 KPDLDLSTVMPIEEFFHKSYAGDIGDESSLGAALRTNKGYQGLKHTMQPAPAPKEVVSAAGAGGYVADWNARYMTEDIPFGLVSIKGIAEVAGVPTPTIDEVIAWSQERMGKEYISSTGSLTGKDIGECRCPQAHGWNSLADAL 438
            K ++D+S V+ I ++F + Y   I D+SS+   +RTN+ Y    H M+           A   GYV D+  RY+TEDIPFGLV +KGIAE+  V TPTID++I W+Q ++GKEY+   G L GK++ E R PQ++G+ SL + L
Sbjct:   19 KTNMDMSDVIHIHDWFKQRYYKQISDDSSVSKCMRTNQAYSQFVHPMK-----------AVENGYVPDFEYRYITEDIPFGLVVMKGIAEIVSVETPTIDKIIKWAQSKIGKEYLVGKG-LKGKNLKEVRAPQSYGFRSLDELL 150          
BLAST of mRNA_P-wetherbeei_contig1059.3.1 vs. uniprot
Match: A0A1S3JK90_LINUN (opine dehydrogenase n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JK90_LINUN)

HSP 1 Score: 129 bits (325), Expect = 3.730e-33
Identity = 62/144 (43.06%), Postives = 94/144 (65.28%), Query Frame = 1
Query:    7 KPDLDLSTVMPIEEFFHKSYAGDIGDESSLGAALRTNKGYQGLKHTMQPAPAPKEVVSAAGAGGYVADWNARYMTEDIPFGLVSIKGIAEVAGVPTPTIDEVIAWSQERMGKEYISSTGSLTGKDIGECRCPQAHGWNSLADAL 438
            +PD+DLS V  + ++F   Y  D+ D+SSL   L+TN  Y GLKH+M               G +V D++ RY++EDIPFGLV  +G+AEVAG+ TP +D+++ W+QE++GKE++ + G + GKDI   +CPQA+G  +L + L
Sbjct:  270 RPDVDLSQVKHVYDWFMTRYTNDVQDKSSLKTVLQTNNAYAGLKHSMLEVE----------PGKFVPDFSHRYISEDIPFGLVVTRGVAEVAGIETPIMDKILLWAQEKLGKEFLVN-GKMQGKDIYSTQCPQAYGLKTLDEVL 402          
BLAST of mRNA_P-wetherbeei_contig1059.3.1 vs. uniprot
Match: A0A1S3JK41_LINUN (tauropine dehydrogenase n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JK41_LINUN)

HSP 1 Score: 127 bits (319), Expect = 2.790e-32
Identity = 61/144 (42.36%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    7 KPDLDLSTVMPIEEFFHKSYAGDIGDESSLGAALRTNKGYQGLKHTMQPAPAPKEVVSAAGAGGYVADWNARYMTEDIPFGLVSIKGIAEVAGVPTPTIDEVIAWSQERMGKEYISSTGSLTGKDIGECRCPQAHGWNSLADAL 438
            +PD+DLS V  + ++F   Y  D+ D+SSL   L+TN  Y GLKH M               G +V D+  RY++E++PFGL   +G+AEVAG+ TP +D+++ W+QE++GKE++ + G + GKDI   RCPQA+G  +L D L
Sbjct:  270 RPDVDLSQVKHVYDWFMTRYTNDVQDKSSLKTVLQTNNAYAGLKHNMLEIE----------PGKFVPDFTHRYLSENVPFGLAVTRGVAEVAGIETPIMDKILLWAQEKLGKEFLVN-GKMQGKDIQYTRCPQAYGLTTLDDIL 402          
BLAST of mRNA_P-wetherbeei_contig1059.3.1 vs. uniprot
Match: UPI00201F53BC (opine dehydrogenase-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI00201F53BC)

HSP 1 Score: 127 bits (318), Expect = 3.660e-32
Identity = 63/144 (43.75%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    7 KPDLDLSTVMPIEEFFHKSYAGDIGDESSLGAALRTNKGYQGLKHTMQPAPAPKEVVSAAGAGGYVADWNARYMTEDIPFGLVSIKGIAEVAGVPTPTIDEVIAWSQERMGKEYISSTGSLTGKDIGECRCPQAHGWNSLADAL 438
            +PD+DLS V+ +++ +   Y   IGD +SL   +++N  Y GL H M   P           G +  ++  RY+ ED+P G+V  KGIA +AGVPTP  DEV+AW Q+++GKEY+  T  LTGKDI E RCPQ +G+N++ D L
Sbjct:  265 RPDIDLSGVVHLQDCYRVDYKDTIGDPTSLFTIMKSNSAYDGLVHPMVDEP----------DGKFSPNFRYRYLVEDVPDGIVVTKGIALIAGVPTPYHDEVLAWCQKKLGKEYLVGT-DLTGKDIKETRCPQKYGYNTIEDLL 397          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1059.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B5D5P1_SIPNU1.280e-3847.22Strombine dehydrogenase n=1 Tax=Sipunculus nudus T... [more]
A0A6V1WY66_HETAK7.380e-3846.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A9I9_MARSA6.070e-3549.31Strombine/alanopine dehydrogenase n=1 Tax=Marphysa... [more]
UPI001E1D7AF01.340e-3449.30opine dehydrogenase-like n=1 Tax=Mercenaria mercen... [more]
A0A8B6CKG9_MYTGA8.680e-3447.14Octopine_DH domain-containing protein n=2 Tax=Myti... [more]
UPI001458C6C19.230e-3445.07opine dehydrogenase-like n=1 Tax=Pecten maximus Ta... [more]
A0A6J8EAT8_MYTCO1.310e-3343.75Octopine dehydrogenase,Opine dehydrogenase,Tauropi... [more]
A0A1S3JK90_LINUN3.730e-3343.06opine dehydrogenase n=1 Tax=Lingula unguis TaxID=7... [more]
A0A1S3JK41_LINUN2.790e-3242.36tauropine dehydrogenase n=1 Tax=Lingula unguis Tax... [more]
UPI00201F53BC3.660e-3243.75opine dehydrogenase-like n=2 Tax=Haliotis TaxID=64... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1059contigP-wetherbeei_contig1059:6687..7684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0TB56
PFAMsOctopine_DH
Model size441
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.79e-32
EggNOG OGs2948S@1|root,2RB5S@2759|Eukaryota,2XDE7@2836|Bacillariophyta
DescriptionNAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain
Cds size441
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185876.2791734-CDS-P-wetherbeei_contig1059:6686..68561683185876.2791734-CDS-P-wetherbeei_contig1059:6686..6856Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1059 6687..6856 -
1683185876.2871096-CDS-P-wetherbeei_contig1059:7269..74931683185876.2871096-CDS-P-wetherbeei_contig1059:7269..7493Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1059 7270..7493 -
1683185876.2942977-CDS-P-wetherbeei_contig1059:7637..76841683185876.2942977-CDS-P-wetherbeei_contig1059:7637..7684Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1059 7638..7684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1059.3.1prot_P-wetherbeei_contig1059.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1059 6687..7684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1059.3.1

>prot_P-wetherbeei_contig1059.3.1 ID=prot_P-wetherbeei_contig1059.3.1|Name=mRNA_P-wetherbeei_contig1059.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
MAKPDLDLSTVMPIEEFFHKSYAGDIGDESSLGAALRTNKGYQGLKHTMQ
PAPAPKEVVSAAGAGGYVADWNARYMTEDIPFGLVSIKGIAEVAGVPTPT
IDEVIAWSQERMGKEYISSTGSLTGKDIGECRCPQAHGWNSLADAL*
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mRNA from alignment at P-wetherbeei_contig1059:6687..7684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1059.3.1 ID=mRNA_P-wetherbeei_contig1059.3.1|Name=mRNA_P-wetherbeei_contig1059.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=998bp|location=Sequence derived from alignment at P-wetherbeei_contig1059:6687..7684- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAAGCCGGACCTCGACCTCAGCACCGTGATGCCCATCGAAGAGTG AGCGACAGTATTGACTGGGAGAGAAGGAAAACGAACTCGTGAAGTGTCGC TACTGCTCAGGCTGATCCGGCCTTAAGCACTGTCCTTTTCCCAGCTCGCC CCAAAACGAAACCGAAAACCCCTTCCCACAATTCCTCGCAGGTTCTTCCA CAAGTCGTACGCCGGCGACATCGGCGACGAGTCCTCTCTCGGCGCCGCGC TTCGCACTAACAAGGGGTACCAAGGCCTGAAACACACCATGCAGCCGGCG CCGGCGCCCAAGGAAGTGGTCTCCGCTGCCGGCGCGGGCGGCTACGTGGC GGACTGGAACGCGCGGTACATGACGGAGGACATTCCGTTCGGACTCGTCT CCATCAAGGGCATCGGTGAGAAGGAATCTCGGTGTCTGTTTGCTCAGCTT CTTTTTCGACCCCTGGAGCTCTTTTCTGAAAAAAATGGCGACTGATGTCG AAATGGATACCGGCAAGGTAAGTAAGTCAATCTTTGTCCTTGTTCTTGCA GCTGCTCTCATGCGAGCTGTTATATTTGTGTCCAATCATAGCTAACACAA AAAGATCGTCTTTCTGTTCGCAGTTTAGGGAGCGCCGTGGTCTCCTTCCT CTTCCCGGATGGTGTCTCCGCTAATGCCGGGCGGCGGCCATGCATTGGTG TCGTGATGCTCGCCCCCTGCTGTGATTCCCATCCGCTCCCACCACTCCAT CCCACTACCGTGGCGAGCCCATGACCCATAACCCCTCAATTCGATCCATC GCCCGCTCTCCTTCGGTCCGACACGCAGCGGAGGTGGCGGGCGTGCCGAC ACCGACGATCGATGAGGTCATCGCATGGAGTCAGGAGCGCATGGGGAAGG AATACATATCTTCGACCGGCAGCCTGACGGGAAAAGACATCGGCGAGTGC CGCTGCCCGCAGGCGCACGGATGGAACTCGCTGGCCGACGCCCTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1059:6687..7684-

>mRNA_P-wetherbeei_contig1059.3.1 ID=mRNA_P-wetherbeei_contig1059.3.1|Name=mRNA_P-wetherbeei_contig1059.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig1059:6687..7684- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAAGCCGGACCTCGACCTCAGCACCGTGATGCCCATCGAAGAGTT
CTTCCACAAGTCGTACGCCGGCGACATCGGCGACGAGTCCTCTCTCGGCG
CCGCGCTTCGCACTAACAAGGGGTACCAAGGCCTGAAACACACCATGCAG
CCGGCGCCGGCGCCCAAGGAAGTGGTCTCCGCTGCCGGCGCGGGCGGCTA
CGTGGCGGACTGGAACGCGCGGTACATGACGGAGGACATTCCGTTCGGAC
TCGTCTCCATCAAGGGCATCGCGGAGGTGGCGGGCGTGCCGACACCGACG
ATCGATGAGGTCATCGCATGGAGTCAGGAGCGCATGGGGAAGGAATACAT
ATCTTCGACCGGCAGCCTGACGGGAAAAGACATCGGCGAGTGCCGCTGCC
CGCAGGCGCACGGATGGAACTCGCTGGCCGACGCCCTCTGA
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