mRNA_P-wetherbeei_contig10581.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10581.1.1
Unique NamemRNA_P-wetherbeei_contig10581.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10581.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10581contigP-wetherbeei_contig10581:895..2314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1042
Hectar predicted targeting categoryother localisation
Exons2
Cds size585
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185875.8712945-UTR-P-wetherbeei_contig10581:894..13511683185875.8712945-UTR-P-wetherbeei_contig10581:894..1351Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10581 895..1351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185875.8802254-CDS-P-wetherbeei_contig10581:1351..14841683185875.8802254-CDS-P-wetherbeei_contig10581:1351..1484Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10581 1352..1484 -
1683185875.8919225-CDS-P-wetherbeei_contig10581:1862..23141683185875.8919225-CDS-P-wetherbeei_contig10581:1862..2314Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10581 1863..2314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10581.1.1prot_P-wetherbeei_contig10581.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10581 1352..2314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10581.1.1

>prot_P-wetherbeei_contig10581.1.1 ID=prot_P-wetherbeei_contig10581.1.1|Name=mRNA_P-wetherbeei_contig10581.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=195bp
APSSAGATPAPSSAAATPAPSSAAATPVPSFASATPAPSFASATPAPSFA
APTPAPSSAGATPAPSSAGATPAPSSAGVTPAPSSAGATPAPSSAAATPA
PLFASATPAPLFTALTPAPSIASATPAPSLAVTTLGPATPAPTVVATPPS
SSLTPAPTTPAPSPVLTSAPTVMETPAPRSVCRGRREWWREMNA*
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mRNA from alignment at P-wetherbeei_contig10581:895..2314-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10581.1.1 ID=mRNA_P-wetherbeei_contig10581.1.1|Name=mRNA_P-wetherbeei_contig10581.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1420bp|location=Sequence derived from alignment at P-wetherbeei_contig10581:895..2314- (Phaeothamnion wetherbeei SAG_119_79)
GCGCCGTCGTCTGCGGGGGCGACTCCGGCGCCGTCGTCTGCGGCGGCGAC
TCCGGCGCCGTCGTCTGCGGCGGCCACTCCGGTGCCGTCGTTTGCTTCGG
CGACTCCGGCGCCCTCGTTTGCTTCGGCGACTCCAGCGCCCTCGTTTGCG
GCGCCGACTCCAGCGCCCTCGTCTGCGGGGGCGACTCCGGCGCCCTCGTC
TGCGGGGGCGACTCCGGCGCCGTCGTCTGCGGGGGTGACTCCGGCGCCGT
CGTCTGCGGGGGCGACTCCGGCGCCGTCGTCTGCGGCGGCTACTCCGGCG
CCCTTGTTTGCTTCGGCAACTCCGGCGCCCTTGTTTACGGCGTTGACTCC
GGCGCCGTCGATTGCTTCGGCGACTCCGGCGCCGTCGCTTGCGGTGACGA
CTCTCGGCCCTGCGACTCCTGCACCAACTGTCGTGGCGACACCGCCATCC
AGGTCTGTTTGCGAAAGAGAACTGAGAGACGTGCATGAACGCTTTGGTGG
AGAGGGCGGACCTGCGTTGAGTCTCCTCTGAGTGGAGAGCGGTATCCTGC
GCTGGAATTGGGCTCGTCTTCTCTTTCTCGCCGTCTTATGAGATGAGATT
CAAAGAGCTTCGGCGTATCAACGCGTGACGTCTTTTGACCTCTTTTGAGC
GTGCAGGCATATTTTGACACGGCGATGTGTCCTACTCCGAAGATAGGATG
ATGCGGCGTAGATGGCGGTGTTTGACGTCCTCGTAGGCTTCCGTGTCGGA
ATGCCTTCTTGCTACGGTCTTCGATATTAACTCCCTTATTCCGAAATCCG
GTCCTCGTTCCTTTTTCTTCGACCGCACAGTTCGTTGACGCCTGCGCCAA
CCACCCCTGCGCCGAGTCCCGTGCTGACTTCTGCCCCCACTGTCATGGAG
ACGCCTGCGCCCAGGTCTGTCTGCAGAGGAAGGCGAGAGTGGTGGAGAGA
GATGAACGCTTAAGTGGGAAGGGCAGAGCTGCTTCGAGTGTCCCTTGAGA
GCAGAGTGTTGTCCGGTATAGGATTTGCCCTCATCCCTCATCTATCTTTC
TCGTGTTTGTGTATTGTATATTTTTGTCGGTTCGCTTTTCTGCTTTTTGG
AAGATGGGAAGAGTTTGAATTGCTTTAGTGTCACAGTGCATGACCTTTCC
AAGGCAGGCCTTTGTTAAGCTGAAGCGCTTACCGCGGTTATCACAGCGAA
ACGCTGATGGATCGGAAAACGTCTCGCCAAAGGTGTGATGTTTTGGTCAG
TCCAGGGGGAGGGAAATACGGGTCCCGTGTTTCGCTATTGTTGAGCTTCT
GCCATTTTCGAGTAAAACGATTCCTGTGAGGCGTCCGTGCAGCTTTCTGC
CCCTCCTGTTTCATTGGCCACTCCTTTCTCTGCTCGCTGTCAATTCCTGT
TGCAGCGTGACGACGCCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10581:895..2314-

>mRNA_P-wetherbeei_contig10581.1.1 ID=mRNA_P-wetherbeei_contig10581.1.1|Name=mRNA_P-wetherbeei_contig10581.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=585bp|location=Sequence derived from alignment at P-wetherbeei_contig10581:895..2314- (Phaeothamnion wetherbeei SAG_119_79)
GCGCCGTCGTCTGCGGGGGCGACTCCGGCGCCGTCGTCTGCGGCGGCGAC
TCCGGCGCCGTCGTCTGCGGCGGCCACTCCGGTGCCGTCGTTTGCTTCGG
CGACTCCGGCGCCCTCGTTTGCTTCGGCGACTCCAGCGCCCTCGTTTGCG
GCGCCGACTCCAGCGCCCTCGTCTGCGGGGGCGACTCCGGCGCCCTCGTC
TGCGGGGGCGACTCCGGCGCCGTCGTCTGCGGGGGTGACTCCGGCGCCGT
CGTCTGCGGGGGCGACTCCGGCGCCGTCGTCTGCGGCGGCTACTCCGGCG
CCCTTGTTTGCTTCGGCAACTCCGGCGCCCTTGTTTACGGCGTTGACTCC
GGCGCCGTCGATTGCTTCGGCGACTCCGGCGCCGTCGCTTGCGGTGACGA
CTCTCGGCCCTGCGACTCCTGCACCAACTGTCGTGGCGACACCGCCATCC
AGTTCGTTGACGCCTGCGCCAACCACCCCTGCGCCGAGTCCCGTGCTGAC
TTCTGCCCCCACTGTCATGGAGACGCCTGCGCCCAGGTCTGTCTGCAGAG
GAAGGCGAGAGTGGTGGAGAGAGATGAACGCTTAA
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