mRNA_P-wetherbeei_contig1058.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1058.2.1
Unique NamemRNA_P-wetherbeei_contig1058.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1058.2.1 vs. uniprot
Match: A0A835Z6B4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6B4_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.920e-17
Identity = 67/189 (35.45%), Postives = 98/189 (51.85%), Query Frame = 3 
Query:  372 ADGEDTLSEFGWF-EDALETSWVEGDEPEQTVMARMAECLEMRHHADIQDQKELGSFRVELRALKAKCAVFTRSF-AGDAAIAAALGGFRVVKMASGARHAEYQVLLAAGGRTWTVWRRYTAWKRLATATAAVT-LPAARDLWRQHDRTRCFFRCLDPPYLWSRCVALEEYLQELVESAPDESLLVDFV 929
            A+G+D    +GWF EDA ++      E  +T M  +      R H +    K   +  VE RA      + T+ F +     A  +GGFR+V++ASG++HAEYQVL + G RTWT W R +A+ R A A        A+   W+Q   T+  FRCLD  YL ++C  LE +L+  +  A D   L++ V
Sbjct:    2 AEGDD----YGWFSEDAYDS------ESSETSMEAI-----QREHRNSVSVKCASNCTVEFRAHNPAFILSTKCFDSSTQCFAWGIGGFRIVRIASGSKHAEYQVLASYGDRTWTRWIRSSAFGRFAKACCEQRGWAASTKAWKQIQTTQRLFRCLDVNYLLNKCHMLENFLRLALFDAGDAQPLLELV 175
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1058.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z6B4_9STRA6.920e-1735.45Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1058contigP-wetherbeei_contig1058:1265..4140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000020992
Model size2269
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.76e-11
EggNOG OGs2C38U@1|root,2RA5F@2759|Eukaryota,1MFFP@121069|Pythiales
Cds size1077
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185875.7673986-UTR-P-wetherbeei_contig1058:1264..19921683185875.7673986-UTR-P-wetherbeei_contig1058:1264..1992Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1058 1265..1992 -
1683185875.8047087-UTR-P-wetherbeei_contig1058:3676..41401683185875.8047087-UTR-P-wetherbeei_contig1058:3676..4140Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1058 3677..4140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185875.7774153-CDS-P-wetherbeei_contig1058:1992..28561683185875.7774153-CDS-P-wetherbeei_contig1058:1992..2856Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1058 1993..2856 -
1683185875.7861922-CDS-P-wetherbeei_contig1058:3146..33471683185875.7861922-CDS-P-wetherbeei_contig1058:3146..3347Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1058 3147..3347 -
1683185875.7962456-CDS-P-wetherbeei_contig1058:3664..36761683185875.7962456-CDS-P-wetherbeei_contig1058:3664..3676Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1058 3665..3676 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1058.2.1prot_P-wetherbeei_contig1058.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1058 1993..3676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1058.2.1

>prot_P-wetherbeei_contig1058.2.1 ID=prot_P-wetherbeei_contig1058.2.1|Name=mRNA_P-wetherbeei_contig1058.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=359bp
MARMAECLEMRHHADIQDQKELGSFRVELRALKAKCAVFTRSFAGDAAIA
AALGGFRVVKMASGARHAEYQVLLAAGGRTWTVWRRYTAWKRLATATAAV
TLPAARDLWRQHDRTRCFFRCLDPPYLWSRCVALEEYLQELVESAPDESL
LVDFVAGDNLSQTSHRDCRSNSALGSGVSGGSGVSGGSGYGGGCRSCYGG
ASTYSDCCDGGGDDDGGGFCGAFGGKAGTTVAASSATKEPLRWSGVDAAE
TEAAITAAASSDGDADRAAEVDANGGCNGVVMAIELEAPPQAETDAAAGG
CSMETAMAAVAAVAATTAMTAAAAAAAVAAAAVAAGVASEPTAPPAGNAT
TPRPPAAW*
back to top

mRNA from alignment at P-wetherbeei_contig1058:1265..4140-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1058.2.1 ID=mRNA_P-wetherbeei_contig1058.2.1|Name=mRNA_P-wetherbeei_contig1058.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2876bp|location=Sequence derived from alignment at P-wetherbeei_contig1058:1265..4140- (Phaeothamnion wetherbeei SAG_119_79)
CGGTATCTCGTGGGGCTCCCAGAAGGCGCTCTCGCCAACGGATCGTCGCA
TCTTCTCTTCACCAGGTATACATTGAACTTCAGAAGAACGACAACTTCGC
GATAGCATGTCTTGACGCCGTGCACATTTGGTATTCTGACACGGCTTTTA
AACGCCCGATAACCCACGCGCCTCCCCCTTCTGCGACCACAGGGCGCGCC
GCCGAGATAACCCCGGCAATCACACCTCACGGCCTTCAACATCATGAGCC
GCTGCTCCCTCCTTCAACGACGGAGGACTTAGCCATCGCGAGATCCCCGC
CGGCGACGCGAGCGCGCCACCGCGACCGCCGCCACTTTGGAACGGGAAGG
AAGCTGTCTGACTCGTCTCAGGCAGATGGGGAAGACACGCTGTCCGAATT
TGGGTGGTTCGAGGACGCGCTCGAGACCTCGTGGGTCGAAGGGGACGAGC
CGGAACAGACGGTGATGGCCAGGATGGTGAGTTGTCGCCGAAACGGCTTC
GTTTGATCAGAAACCTATGGTTTCTGAAAGTCTCCTCTTCACCTTGAACT
TTCTTTGGTCTAACGCAAAGAAAGGCCTACGTTAAAAAAGCGCATTAAAG
GTTGTTGTGCGTCCTCGTTCTTTCTGCCGTACTGAAGAAATCCGGCGCTC
TTGCGGTTTTCAAGACGTCAAACTTTCCTCTTGGTCCACACACACCTCGT
TGAGGTGACTCTGTTCACCTGAAAACGCCGCCCTGCTTCCAAAATTCTGT
CCATATTGCATCAAAAACTCTTTACATCATGAAAACGCAACAGGCGGAGT
GTCTCGAGATGCGCCACCATGCTGACATACAGGACCAGAAAGAATTGGGA
AGCTTCCGTGTCGAGCTGCGCGCGCTCAAGGCGAAGTGCGCCGTCTTCAC
GCGGAGTTTCGCGGGGGACGCGGCGATCGCGGCCGCGCTCGGCGGCTTTC
GGGTCGTCAAGATGGCCTCCGGGGCTCGCCATGCCGAGTACCAGGTTTGT
GGCGTTAGGGTATGGCTTTGGGGCGGGAAGCTGCCGCCGTTTGGATCTAA
CGAAGCGCTGTACGTGTATCTTTTAGAGGGCTTTGTGGGTGGCTCGATCG
TCCTTGAGAGAAATGTGCAACAAAGCGTCAGTGGCCCCTCGTTTTGTGAT
GTGGCTCTTAATGCGCACTGCGCCCTCTATCCAAACGCGTCGAGCCTGTA
GGTTACTCATCATCTAACGGACTGACACCGATCAAAAGTTCCGATTCTGT
GCGCCTTCATTTGGTGTGTCTGGGGAACAAACAGGTATTGCTGGCGGCGG
GTGGGCGGACGTGGACAGTGTGGCGCCGTTACACGGCGTGGAAGAGGTTG
GCGACGGCAACGGCGGCGGTGACGCTGCCGGCGGCGCGCGACCTGTGGCG
GCAGCACGACCGCACTCGCTGCTTCTTCCGCTGCCTCGACCCGCCTTACC
TCTGGAGCCGCTGCGTGGCGCTCGAAGAGTACCTGCAGGAGCTGGTCGAG
TCGGCGCCGGACGAATCGTTGCTGGTGGACTTTGTCGCCGGCGACAACTT
GAGCCAGACGTCCCACCGCGACTGCCGCAGCAACAGTGCGCTCGGCAGCG
GCGTGAGCGGCGGCAGCGGCGTGAGCGGCGGCAGCGGCTACGGCGGCGGC
TGCCGCAGCTGCTACGGCGGCGCGAGCACCTACAGCGACTGCTGCGACGG
TGGTGGCGACGATGATGGCGGCGGCTTCTGTGGTGCCTTTGGCGGCAAGG
CTGGGACAACCGTGGCCGCAAGCTCCGCCACGAAGGAGCCACTCCGCTGG
TCGGGCGTTGACGCGGCAGAAACGGAAGCTGCTATTACGGCTGCGGCGAG
CAGCGACGGCGACGCCGACCGTGCGGCGGAGGTCGATGCCAACGGCGGCT
GCAATGGTGTCGTGATGGCCATCGAGCTCGAAGCGCCGCCACAGGCAGAG
ACAGACGCGGCGGCCGGCGGGTGCAGCATGGAGACTGCCATGGCTGCTGT
AGCAGCGGTGGCGGCGACCACGGCGATGACAGCGGCAGCGGCAGCGGCTG
CAGTGGCGGCGGCGGCGGTGGCAGCAGGGGTGGCGTCGGAGCCCACCGCG
CCGCCGGCCGGCAACGCCACGACGCCGCGGCCGCCTGCCGCGTGGTGAAG
AGGGCTGCGGCGCTCGCAAGACTTCCCGAAAGAATAATCCTCCAGTTTTG
AAGAATGAGGCCCGTTGCCTTTAGGTGGGCGGGCGGCGAGCAATTTTGAA
ACGGCAAAGAAAATCCCGAGGCGTGGAAAGCTGCAGTGCAGAGCAACTTG
GCACGGCGCTGGAAAACGGAACAAGGGAAAGGTCAGTGAGAGGGAAGGGG
AGCGAGCGGGACTGGTTGAAGATGTGGTTGCTCTAGAGAATGAAGAACGA
AGAGGGAAAGCTGAAGGGAGTGAGAAGGGAGGAATGGCGCGAAGGAACAG
CGTGCTTTCGATGACGATGCTTCGCTGGCTAAGAATGCCGAGAAAGGAAA
CGAGAGCGGGGTAGAGGTTTGCTGCCGCAGCGTAACTGGGTGCACATGTG
CGAGCTGTCATCGTTCCCGTGGCCGCAGCGACGGCGGTGGCGGCGGCGGC
GGCGGTGGCAGCAGCGGGGGCTGCCGCGGCTGCGGTGCCGTCCGGCGCGT
GCAATTGCGCAAGAGCCGCGGCTGTGCTGGGGAAGCGGCGAAGTAGACAG
TAGTGTTGTTGGGTAGAGGACGGACCGGATTGTTAGCTATCCAGCGACCC
TGCGCGCTGCTTGTTAATGTTCAATGGTGTGTATCTAGTACAGGCTAGTC
CATCTCATCCACTGGAGGTGAAGGCTTTGTCGAGCCGGTGGTTGCGATGG
AGAGGATACTGCGCTTTAGTGCACAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1058:1265..4140-

>mRNA_P-wetherbeei_contig1058.2.1 ID=mRNA_P-wetherbeei_contig1058.2.1|Name=mRNA_P-wetherbeei_contig1058.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1077bp|location=Sequence derived from alignment at P-wetherbeei_contig1058:1265..4140- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCAGGATGGCGGAGTGTCTCGAGATGCGCCACCATGCTGACATACA
GGACCAGAAAGAATTGGGAAGCTTCCGTGTCGAGCTGCGCGCGCTCAAGG
CGAAGTGCGCCGTCTTCACGCGGAGTTTCGCGGGGGACGCGGCGATCGCG
GCCGCGCTCGGCGGCTTTCGGGTCGTCAAGATGGCCTCCGGGGCTCGCCA
TGCCGAGTACCAGGTATTGCTGGCGGCGGGTGGGCGGACGTGGACAGTGT
GGCGCCGTTACACGGCGTGGAAGAGGTTGGCGACGGCAACGGCGGCGGTG
ACGCTGCCGGCGGCGCGCGACCTGTGGCGGCAGCACGACCGCACTCGCTG
CTTCTTCCGCTGCCTCGACCCGCCTTACCTCTGGAGCCGCTGCGTGGCGC
TCGAAGAGTACCTGCAGGAGCTGGTCGAGTCGGCGCCGGACGAATCGTTG
CTGGTGGACTTTGTCGCCGGCGACAACTTGAGCCAGACGTCCCACCGCGA
CTGCCGCAGCAACAGTGCGCTCGGCAGCGGCGTGAGCGGCGGCAGCGGCG
TGAGCGGCGGCAGCGGCTACGGCGGCGGCTGCCGCAGCTGCTACGGCGGC
GCGAGCACCTACAGCGACTGCTGCGACGGTGGTGGCGACGATGATGGCGG
CGGCTTCTGTGGTGCCTTTGGCGGCAAGGCTGGGACAACCGTGGCCGCAA
GCTCCGCCACGAAGGAGCCACTCCGCTGGTCGGGCGTTGACGCGGCAGAA
ACGGAAGCTGCTATTACGGCTGCGGCGAGCAGCGACGGCGACGCCGACCG
TGCGGCGGAGGTCGATGCCAACGGCGGCTGCAATGGTGTCGTGATGGCCA
TCGAGCTCGAAGCGCCGCCACAGGCAGAGACAGACGCGGCGGCCGGCGGG
TGCAGCATGGAGACTGCCATGGCTGCTGTAGCAGCGGTGGCGGCGACCAC
GGCGATGACAGCGGCAGCGGCAGCGGCTGCAGTGGCGGCGGCGGCGGTGG
CAGCAGGGGTGGCGTCGGAGCCCACCGCGCCGCCGGCCGGCAACGCCACG
ACGCCGCGGCCGCCTGCCGCGTGGTGA
back to top