mRNA_P-wetherbeei_contig10576.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10576.2.1
Unique NamemRNA_P-wetherbeei_contig10576.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10576.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10576contigP-wetherbeei_contig10576:535..2240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1706
Hectar predicted targeting categorysignal peptide
Exons1
Cds size645
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185875.632538-UTR-P-wetherbeei_contig10576:534..9811683185875.632538-UTR-P-wetherbeei_contig10576:534..981Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10576 535..981 +
1683185875.6509118-UTR-P-wetherbeei_contig10576:1626..22401683185875.6509118-UTR-P-wetherbeei_contig10576:1626..2240Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10576 1627..2240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185875.6419957-CDS-P-wetherbeei_contig10576:981..16261683185875.6419957-CDS-P-wetherbeei_contig10576:981..1626Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10576 982..1626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10576.2.1prot_P-wetherbeei_contig10576.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10576 982..1626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10576.2.1

>prot_P-wetherbeei_contig10576.2.1 ID=prot_P-wetherbeei_contig10576.2.1|Name=mRNA_P-wetherbeei_contig10576.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=215bp
MAAMAMVFHDACLVALALDFLGDGYLYTASVAKTWKAIAIRKNPACRTAL
RWAAASLPCLQFGRGCRCPWSTVAWSGDRLPPWATGAEFHTSPAGIAQLA
AAAGLTDVLKWARTRGCPFDARVPAAAARGGHFETLRWLRTDAIVPWDRE
TAVAAARGGHIRTLEWALENGCAWRRRPGRGGRPSTDRTIAQEARLAGQK
AVVSWLNARGYPVT*
back to top

mRNA from alignment at P-wetherbeei_contig10576:535..2240+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10576.2.1 ID=mRNA_P-wetherbeei_contig10576.2.1|Name=mRNA_P-wetherbeei_contig10576.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1706bp|location=Sequence derived from alignment at P-wetherbeei_contig10576:535..2240+ (Phaeothamnion wetherbeei SAG_119_79)
ATCTGAAGTGAGAGAGAGGAGAGTACAGGGACTGTGCGAAGGTTCATTTC
ACAATTTGAGTGACCAGAACCGAAGGTTCCGTCGCGAGGCTTTGAAGAAA
AGCCCTTTGTCGATTCTCGAGTTCCTCACGTAGAGGGGGAAGACATCACT
CGCTGACTGTGACCTCCGACTTGGCCGCTTCTTCGCCGTCATCTTGACCA
TATTCGTCATTTACAAGTGCAGCTCTACAAACAGCTTTCCAGAGGACGTG
CTGGTCCGCGGAGGCGATCGCTGCTGGCAGAGGATTCTCCAACTTCCTCT
GTCCAGCTTGACGGACTGAAGAAGCTTATTCATCGGCTCCTCCCAGTGCG
TCCCACTGCTTTCCAAGTTCAGAGAGGCTCCGCCTGGAGCTCTTCCTCCG
GCGCTTCCTTCCTGGGCCCTACCGTTGTCTGCAGTTGGCTGAAAAGGATG
GCGGCCATGGCGATGGTCTTCCATGATGCTTGCTTGGTGGCTCTGGCACT
GGATTTTCTCGGCGATGGTTACCTCTACACTGCGAGTGTGGCGAAGACCT
GGAAAGCGATTGCTATCCGAAAGAATCCTGCATGCCGGACAGCGCTCCGA
TGGGCCGCGGCATCACTTCCCTGCCTCCAGTTCGGCCGCGGATGCCGCTG
TCCTTGGTCCACGGTGGCATGGTCAGGAGATCGGTTGCCGCCGTGGGCGA
CAGGAGCGGAGTTTCACACTTCGCCGGCCGGCATCGCGCAGTTGGCAGCA
GCTGCCGGTTTGACCGACGTGCTGAAATGGGCAAGGACCCGCGGCTGCCC
CTTCGACGCCCGCGTTCCTGCTGCCGCCGCCCGCGGCGGCCACTTCGAGA
CCCTCCGGTGGCTCAGGACCGACGCCATCGTCCCTTGGGACCGCGAGACG
GCCGTGGCGGCTGCACGCGGTGGGCACATTCGCACCCTCGAGTGGGCTCT
GGAAAACGGGTGTGCATGGCGACGGCGGCCGGGCCGCGGCGGGCGGCCCT
CGACCGACCGCACCATAGCGCAGGAGGCGCGGCTGGCGGGGCAGAAGGCG
GTGGTCAGCTGGCTGAACGCGCGCGGCTACCCAGTCACGTGAGAGATCAG
TCGCGTAGGACCGCGTCGTCGCCGCCGCCAGCCGCTTCCCTTTTGATAGA
TCGACTTCAGAACCATCTCATCTGCGAGCTCTTGTGTCGCGGTTGTCTTC
TCTTGTTCCTTCTTCCTTGTTTTTGGTTTCTTTCCAAGAGACGTGGTTTG
GTTACTACTTCGAGGAATAGTGAGAAGGAAGATAAAGAGTATAATGGGAA
GGAAGAACGCGTAAGCTTTATTTGTGCATTTTCGACCCGACTTTACCCAC
CTTGATCCTCTTTGCCATGGAGGCGTCTGGTAGGCTGTGTCCGCTGGCAG
AGCGCCTAAAGGCGACGGCGCTTCGCAGCGAGCGGGAAGGATGGACCGGG
AGCAGCGGCGCGCGGGCAGTTCCCTGTACCGTGTCATAAGAAGTTGGCGG
TGGGGTTGAAGCAGCCAGGTGCTGTCGTTGCAGGCGGGGGGAATGGCGCT
AAGATGTTTGCAACGGCGGCGGGCAGGCAAACTGAGGGGCGATGAGCCGC
CATACGCTTGGCAGCGAATGTGTACAATGACGAGCGGGAGCGATTTTCCT
CCCGGCGCCTTCAAGAGAGCTAGGACCAGCATTTACAGATAAAGAAAGGC
TTTGCT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10576:535..2240+

>mRNA_P-wetherbeei_contig10576.2.1 ID=mRNA_P-wetherbeei_contig10576.2.1|Name=mRNA_P-wetherbeei_contig10576.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=645bp|location=Sequence derived from alignment at P-wetherbeei_contig10576:535..2240+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCCATGGCGATGGTCTTCCATGATGCTTGCTTGGTGGCTCTGGC
ACTGGATTTTCTCGGCGATGGTTACCTCTACACTGCGAGTGTGGCGAAGA
CCTGGAAAGCGATTGCTATCCGAAAGAATCCTGCATGCCGGACAGCGCTC
CGATGGGCCGCGGCATCACTTCCCTGCCTCCAGTTCGGCCGCGGATGCCG
CTGTCCTTGGTCCACGGTGGCATGGTCAGGAGATCGGTTGCCGCCGTGGG
CGACAGGAGCGGAGTTTCACACTTCGCCGGCCGGCATCGCGCAGTTGGCA
GCAGCTGCCGGTTTGACCGACGTGCTGAAATGGGCAAGGACCCGCGGCTG
CCCCTTCGACGCCCGCGTTCCTGCTGCCGCCGCCCGCGGCGGCCACTTCG
AGACCCTCCGGTGGCTCAGGACCGACGCCATCGTCCCTTGGGACCGCGAG
ACGGCCGTGGCGGCTGCACGCGGTGGGCACATTCGCACCCTCGAGTGGGC
TCTGGAAAACGGGTGTGCATGGCGACGGCGGCCGGGCCGCGGCGGGCGGC
CCTCGACCGACCGCACCATAGCGCAGGAGGCGCGGCTGGCGGGGCAGAAG
GCGGTGGTCAGCTGGCTGAACGCGCGCGGCTACCCAGTCACGTGA
back to top