mRNA_P-wetherbeei_contig10572.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10572.1.1
Unique NamemRNA_P-wetherbeei_contig10572.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10572.1.1 vs. uniprot
Match: A0A7G9NXR3_9BACT (dTDP-4-dehydrorhamnose reductase n=1 Tax=Planctomycetales bacterium zrk34 TaxID=2723666 RepID=A0A7G9NXR3_9BACT)

HSP 1 Score: 217 bits (552), Expect = 2.890e-66
Identity = 122/267 (45.69%), Postives = 162/267 (60.67%), Query Frame = 1
Query:    1 MKLLITGASGKLGGYLMDEARARGFTVEGWSRRGGVDLTDTAQVLERITRFEPDAVIHSAAMSTVAECFRNPEGARQANPRASGLLAKWCGQNRVRLVAVSTDMVFDGEGAPYDEDSEPNPCTEYGRSKVAAEQAVLENQQALVVRVALLCGRTRTQN-RSFFDGLLDQLQERKVVRAFADEWRTPLFLGDAASALLDLAQTKPTGVLHLGGPERLSRFEMCQRIAALVGAPADIVEPSSRLDGGFDEPRQRDLSLGSRRVQELLPH 798
            M++L+TGA G+LG YL+D     G  +  W  R  VDLTD   V +   R   D VIH+AAMS  A  F  PE A+  N  A+  L +   +   RL+ VSTDMVFDGE APY E +   P + YGR+K+A E+ VL     +VVRV+LL G +R    ++ FD  +  ++  +  R F DEWRTPL + DAA+ L+  AQ++  G+ HLGGPERLSRFEM +++A L+GAPA  ++  SRL    DEPR RDLSL S R  +   H
Sbjct:    1 MRILVTGAGGQLGPYLIDAVSRAGCELIAWRGRDEVDLTDADAVRQAYERAAADVVIHAAAMSRPALAFAEPEAAQAVNVDATRQLVELADRAGARLIYVSTDMVFDGEAAPYAESAATAPRSVYGRTKLAGEKEVLAVAANMVVRVSLLYGPSRRSGFKTLFDQQVAAMRAGEKARLFEDEWRTPLAINDAAAGLVAAAQSEARGLYHLGGPERLSRFEMGRQLAELLGAPASCLQGCSRLSIESDEPRPRDLSLDSTRWSQAFAH 267          
BLAST of mRNA_P-wetherbeei_contig10572.1.1 vs. uniprot
Match: A0A5B9W272_9BACT (dTDP-4-dehydrorhamnose reductase n=1 Tax=Aquisphaera giovannonii TaxID=406548 RepID=A0A5B9W272_9BACT)

HSP 1 Score: 209 bits (531), Expect = 5.510e-63
Identity = 122/286 (42.66%), Postives = 158/286 (55.24%), Query Frame = 1
Query:    1 MKLLITGASGKLGGYLMDEARARGFT-VEGWSRRGG----------VDLTDTAQVLERITRFEPDAVIHSAAMSTVAECFRNPEGARQANPRASGLLAKWCGQNRVRLVAVSTDMVFDGEGAPYDEDSEPNPCTEYGRSKVAAEQAVLENQQALVVRVALLCGRTRTQNRSFFDGLLDQLQERKVVRAFADEWRTPLFLGDAASALLDLAQTKPTGVLHLGGPERLSRFEMCQRIAALVGAPADIVEPSSRLDGGFDEPRQRDLSLGSRRVQELLPHFRPRSLEQA 825
            M++L+TGASG+LG YL+DE   RG   V GW  R            VDLTD   V   +    P+ VIH AA+S      R+PE  R  N RA+  LA+WCG    RL+  STDMVFDGE   Y ED    P  EYGR+K  AE AVL   +A+V R++LL G +R    SFFD  +  L+  +    F DE+RTP+    AA AL+ LA    +G++H+GG ER+SRFE+  R A  +G    +V    R D    EPR RDLSL +  + E LP     S+E +
Sbjct:    1 MRILVTGASGQLGAYLLDETLTRGRAEVTGWCHRPAAGPRDRPLRAVDLTDELAVEAALREAAPEVVIHLAAISAADAVRRDPERGRAVNVRATERLARWCGDRDRRLIFASTDMVFDGERGGYREDDPACPVLEYGRTKAEAEAAVLAIPRAVVARISLLFGPSRAGRESFFDRAISALRRGEPQAFFEDEYRTPMHYATAARALMGLAGEGSSGIIHVGGAERVSRFELMSRAARALGLDPRLVRRGRRADVPTPEPRPRDLSLDTALLAETLPGLERPSIEDS 286          
BLAST of mRNA_P-wetherbeei_contig10572.1.1 vs. uniprot
Match: UPI0013EC592B (SDR family oxidoreductase n=1 Tax=Aquisphaera sp. JC669 TaxID=2712864 RepID=UPI0013EC592B)

HSP 1 Score: 208 bits (529), Expect = 1.100e-62
Identity = 120/276 (43.48%), Postives = 159/276 (57.61%), Query Frame = 1
Query:    1 MKLLITGASGKLGGYLMDEARARGFT-VEGWSRRGG----------VDLTDTAQVLERITRFEPDAVIHSAAMSTVAECFRNPEGARQANPRASGLLAKWCGQNRVRLVAVSTDMVFDGEGAPYDEDSEPNPCTEYGRSKVAAEQAVLENQQALVVRVALLCGRTRTQNRSFFDGLLDQLQERKVVRAFADEWRTPLFLGDAASALLDLAQTKPTGVLHLGGPERLSRFEMCQRIAALVGAPADIVEPSSRLDGGFDEPRQRDLSLGSRRVQELLP 795
            M++LITGASG+LG YL DE  ++G   + GW  R G          VDLTD   V E +   +P+ VIH AAMS      R+PE  R  N  A+  +A+WCG+   RL+  STDMVFDGE   Y E     P  EYGR+K  AE+AVL     +V R++LL G +R+   SFFD  +  L+  +    F DE+RTPL    A+ AL  LA T   G++HLGGPER+SRFE+  R+A  +G    +V  + R D    EPR  DLSL + R+ ++LP
Sbjct:    1 MRILITGASGQLGSYLRDEWLSQGSDEITGWCHRPGADRPGPASSPVDLTDDRAVEEALREADPEVVIHLAAMSAADAVRRDPELGRAVNVLATERIARWCGERDRRLIFASTDMVFDGERGGYREQDPACPILEYGRTKAEAERAVLAIPHGVVARISLLYGPSRSGRESFFDRAIAALRRGESQTFFEDEFRTPLHYAIASRALAGLATTDFAGIIHLGGPERVSRFELMTRVAHRLGLDQGLVRGNRRADVAAAEPRPADLSLDTTRLAQVLP 276          
BLAST of mRNA_P-wetherbeei_contig10572.1.1 vs. uniprot
Match: UPI0013EA5035 (sugar nucleotide-binding protein n=1 Tax=Paludisphaera soli TaxID=2712865 RepID=UPI0013EA5035)

HSP 1 Score: 204 bits (518), Expect = 4.040e-61
Identity = 117/276 (42.39%), Postives = 157/276 (56.88%), Query Frame = 1
Query:    1 MKLLITGASGKLGGYLMDEARARGFTVEGWSRRGGVDLTDTAQVLERITRFEPDAVIHSAAMSTVAECFRNPEGARQANPRASGLLAKWCGQNRVRLVAVSTDMVFDGEGAPY-DEDSEPNPCTEYGRSKVAAEQAVLENQQALVVRVALLCGRTRTQNRSFFDGLLDQLQERKVVRAFADEWRTPLFLGDAASALLDLAQTKPTGVLHLGGPERLSRFEMCQRIAALVGAPADIVEPSSRLDGGFDEPRQRDLSLGSRRVQELLPHFRPRSLEQA 825
            M++++TGA+G+LG Y+ +     G  V  W   G VDL D A +   + R + DAV+H AA+S    C R PE AR+ N  A   +A WC     RLV  STDMVFDG G P+  E  EP P   YG +K AAE   L+   A VVRVAL+ G TR    +F+D  +  L+   V   F DE+RTPL    AA A++ L  +   GV+HLGG ER+SRFEM +R+A  +G    +V  +SR D  F EPR  D+S+ + R+  LLP      +E+A
Sbjct:    1 MQIVLTGATGRLGAYVREPLARTGSEVVAWGGAGDVDLEDPAAIARELDRADADAVLHLAAISDAETCRREPERARRINVEAVSSIAAWCRAKGRRLVFTSTDMVFDG-GKPWASEADEPRPILAYGATKRAAELEALQAADAAVVRVALMYGPTRCGRETFYDKAVANLRAGSVQTFFDDEFRTPLDYATAAKAIVALVVSDFRGVVHLGGRERVSRFEMMKRVARGLGLDESLVRSNSRADAVFAEPRPADVSMDTSRLAALLPSLDRAPIEEA 275          
BLAST of mRNA_P-wetherbeei_contig10572.1.1 vs. uniprot
Match: A0A518H6V3_9BACT (dTDP-4-dehydrorhamnose reductase n=1 Tax=Tautonia plasticadhaerens TaxID=2527974 RepID=A0A518H6V3_9BACT)

HSP 1 Score: 201 bits (511), Expect = 5.600e-60
Identity = 116/284 (40.85%), Postives = 160/284 (56.34%), Query Frame = 1
Query:    1 MKLLITGASGKLGGYLMDEARARGFTVEGWSRRGG----------VDLTDTAQVLERITRFEPDAVIHSAAMSTVAECFRNPEGARQANPRASGLLAKWCGQNRVRLVAVSTDMVFDGEGAPYDEDSEPNPCTEYGRSKVAAEQAVLENQQALVVRVALLCGRTRTQNRSFFDGLLDQLQERKVVRAFADEWRTPLFLGDAASALLDLAQTKPT-GVLHLGGPERLSRFEMCQRIAALVGAPADIVEPSSRLDGGFDEPRQRDLSLGSRRVQELLPHFRPRSLE 819
            M++++TGASG+LG Y++D     G  V GWSR  G          VDL D   +   + R  PDA++H AA+S V     +P  A   N  ASG +A W   N  RLV  STD+VFDG  A + ED  P P   YGRSK   E+ VL +   LV R++LL G +R    +F D ++D L+ R+    F DE+RTPL    AA AL  L ++    G+LH+GG ER+SRFEM +R+AA  G P +++  + + D    EPR  D+SL + R++E LP     +LE
Sbjct:    1 MRIVVTGASGQLGSYVLDRLDGSGHEVIGWSRSTGGSRGRTPIEPVDLIDPDALAAALDRTNPDAILHLAAISRVDRVLADPALASTVNADASGTIADWASSNARRLVFTSTDLVFDGSRAWWREDDSPRPILGYGRSKQEGERRVLRHPSHLVARLSLLYGPSRCGRPTFLDAIIDALRRRESRSLFLDEFRTPLDYATAAEALARLVESPEIIGILHVGGVERVSRFEMLRRLAAHAGLPVNLLRGNRQDDAPGPEPRPSDVSLDTSRLEEWLPALDRPTLE 284          
BLAST of mRNA_P-wetherbeei_contig10572.1.1 vs. uniprot
Match: UPI0013ED8503 (SDR family oxidoreductase n=1 Tax=unclassified Paludisphaera TaxID=2624067 RepID=UPI0013ED8503)

HSP 1 Score: 199 bits (505), Expect = 3.640e-59
Identity = 109/275 (39.64%), Postives = 154/275 (56.00%), Query Frame = 1
Query:    1 MKLLITGASGKLGGYLMDEARARGFTVEGWSRRGGVDLTDTAQVLERITRFEPDAVIHSAAMSTVAECFRNPEGARQANPRASGLLAKWCGQNRVRLVAVSTDMVFDGEGAPYDEDSEPNPCTEYGRSKVAAEQAVLENQQALVVRVALLCGRTRTQNRSFFDGLLDQLQERKVVRAFADEWRTPLFLGDAASALLDLAQTKPTGVLHLGGPERLSRFEMCQRIAALVGAPADIVEPSSRLDGGFDEPRQRDLSLGSRRVQELLPHFRPRSLEQA 825
            M++L+TGA+G++G YL D    RG+ V  W+    VDLTD   V   + + + D V+H+AA+S    C R+P+ AR  N  A   +++WC     RLV  STDMVFDG      E  EP P   YG +K AAE   L+   ++V R+ LL G T     +F+D  + QL+       F DE+RTPL    AA AL  LA +   G++H+GG ERLSRFE+  ++A  +G    +V  +SR +  F EPR  D+SL + R+  LLP      +E+A
Sbjct:    1 MRILLTGATGRIGAYLRDPLNMRGWEVVRWAGSHAVDLTDPGAVSRGLDQADADVVLHAAAISDAETCRRDPDRARTINVEAVAWISEWCAARGRRLVFTSTDMVFDGTKPWSTESDEPRPILAYGATKRAAELEALKAPDSVVARICLLYGPTLCDRETFYDKAVGQLRAGAPQTFFDDEFRTPLDYATAARALAMLAASDFRGIVHVGGAERLSRFELMTKVARGLGLDGSLVRSNSRAEASFSEPRPADVSLDTSRLAALLPTLERPPVEEA 275          
BLAST of mRNA_P-wetherbeei_contig10572.1.1 vs. uniprot
Match: A0A1M3N8Z1_9DELT (dTDP-4-dehydrorhamnose reductase n=1 Tax=Myxococcales bacterium 68-20 TaxID=1895795 RepID=A0A1M3N8Z1_9DELT)

HSP 1 Score: 199 bits (505), Expect = 4.600e-59
Identity = 123/273 (45.05%), Postives = 163/273 (59.71%), Query Frame = 1
Query:    7 LLITGASGKLGGYLMDEARARGFTVE--GWSRRG--GVDLTDTAQVLERITRFEPDAVIHSAAMSTVAECFRNPEGARQANPRASGLLAKWCGQNRVRLVAVSTDMVFDGEGAPYDEDSEPNPCTEYGRSKVAAEQAVLEN-QQALVVRVALLCGRTRTQNRSFFDGLLDQLQERKV-VRAFADEWRTPLFLGDAASALLDLA-QTKPTGVLHLGGPERLSRFEMCQRIAALVGA-PADIVEPSSRLDGGFDEPRQRDLSLGSRRVQELLPHF 801
            +L+TGA+G LGG+L+ E   RG T    G   RG  G+DL+D   V   ++   P  VIH+AA++ +++C R+PE A   N   +  LA  C +   RLV VSTD+VFDGE APYDE   P P + YGR+K+AAE+   +     LVVR  LL G T T  R FFD  +D L+     +R F DEWRTPL L  AA AL+ +A +    G +HLGGPER+SR+EM +R+A  +G  PA + E +SRL G   EPR RD+SL S     + P  
Sbjct:    7 VLVTGATGLLGGHLVAELARRGVTTVACGGPGRGALGIDLSDPEAVASLVSAARPRVVIHAAAVTLISDCARDPERAEAVNVAGTVHLADACREAGARLVHVSTDLVFDGEHAPYDESVTPAPLSVYGRTKLAAEREAAQRVPNLLVVRTTLLFGPTLTARRGFFDQQVDALKTGSPRMRLFEDEWRTPLSLRAAAEALVAMAGEDDLRGTIHLGGPERMSRYEMGERLARHLGVDPAAVFERASRL-GVAGEPRPRDVSLDSSAFHHVFPRL 278          
BLAST of mRNA_P-wetherbeei_contig10572.1.1 vs. uniprot
Match: A0A1U7GJQ1_9BACT (NAD(P)-dependent oxidoreductase n=1 Tax=Planctomycetales bacterium 71-10 TaxID=1895807 RepID=A0A1U7GJQ1_9BACT)

HSP 1 Score: 198 bits (503), Expect = 8.660e-59
Identity = 113/285 (39.65%), Postives = 156/285 (54.74%), Query Frame = 1
Query:    1 MKLLITGASGKLGGYLMDEARARGFTVEGWSRRGGV----------DLTDTAQVLERITRFEPDAVIHSAAMSTVAECFRNPEGARQANPRASGLLAKWCGQNRVRLVAVSTDMVFDGEGAPYDEDSEPNPCTEYGRSKVAAEQAVLENQQALVVRVALLCGRTRTQNRSFFDGLLDQLQERKVVRAFADEWRTPLFLGDAASALLDLAQTKPTGVLHLGGPERLSRFEMCQRIAALVGAPADIVEPSSRLDGGFDEPRQRDLSLGSRRVQELLPHFRPRSLEQA 825
            M++++TGA+G++G YL +   ARG+ V  WS   GV          DL D   ++  + R  PD ++H AA+S      R+P+ AR  N  A   +A WC +N  RLV  STDMVF G  A   E  EP P   YG SK AAE+A LE   ++V R+ LL G TR    +FFD  + QL+  +    F DE+RTPL    AA  L  LA++   G LH+GGP R+SR+E+  R+A  +G    +V  + R D  F EPR  D+SL + R+  L P      +E+A
Sbjct:    1 MRIVLTGATGRIGAYLREPLHARGWKVIPWSGSPGVEWGGTPAVAVDLADARTIVGELDRASPDVIVHLAAISDAEAVRRDPDRARVVNVEAVATIAGWCARNERRLVFTSTDMVFPGTKASSTEADEPGPILAYGESKRAAERAALEAPDSVVARICLLYGPTRNGRGTFFDQAVAQLRAGEPRTFFDDEFRTPLDYATAAEILARLAESPYCGPLHVGGPVRMSRYELMTRVARGLGLDESLVRANRRADAVFAEPRPADVSLDTTRLAALFPDLGRPPVEEA 285          
BLAST of mRNA_P-wetherbeei_contig10572.1.1 vs. uniprot
Match: A0A3N5RR15_9PLAN (dTDP-4-dehydrorhamnose reductase (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3N5RR15_9PLAN)

HSP 1 Score: 197 bits (500), Expect = 1.420e-57
Identity = 116/273 (42.49%), Postives = 154/273 (56.41%), Query Frame = 1
Query:    4 KLLITGASGKLGGYLMDEARARGFTVEGWSRRGG----------VDLTDTAQVLERITRFEPDAVIHSAAMSTVAECFRNPEGARQANPRASGLLAKWCGQNRVRLVAVSTDMVFDGEGAPYDEDSEPNPCTEYGRSKVAAEQAVLENQQALVVRVALLCGRTRTQNRSFFDGLLDQLQER-KVVRAFADEWRTPLFLGDAASALLDLAQTKPTGVLHLGGPERLSRFEMCQRIAALVGAPADIVEPSSRLDGGFDEPRQRDLSLGSRRVQEL 789
            ++L+TGA+G+LG Y+  E  +R    + WS  G           VDL D + V        P+ V+H  A++T   C  NP+ AR+ N +A+GLLA+       RLV  STD+VFDGE   Y E   P P  +YG+SK A EQ VL+   A+VVR+ALL G       SFFD  L  +  R + +  F DEWRTPL    AA AL+D+A    TG+LH+GGPER+SRFEM  R+A  +G      +P +R      EPR RD+SL S R +EL
Sbjct:   82 RILLTGATGRLGSYVARELESRALETDYWSGSGAATPSGRPTNAVDLADESTVRLAFAETRPEIVLHVGALATAEACRANPQRARRVNEQATGLLAELAQSAGARLVYTSTDLVFDGEQGNYRESDSPAPIMQYGQSKAAGEQRVLKRPLAVVVRLALLYGPKLGDRDSFFDLQLQAIATRDRRMNLFIDEWRTPLDYVTAAQALVDIALHNVTGILHVGGPERMSRFEMGIRLAERLGCREPPFDPVTRDAIPGSEPRPRDVSLDSSRWREL 354          
BLAST of mRNA_P-wetherbeei_contig10572.1.1 vs. uniprot
Match: A0A3A0D0B9_9BACT (dTDP-4-dehydrorhamnose reductase n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A3A0D0B9_9BACT)

HSP 1 Score: 192 bits (489), Expect = 1.680e-56
Identity = 112/271 (41.33%), Postives = 155/271 (57.20%), Query Frame = 1
Query:   10 LITGASGKLGGYLMDEARARGFTVEGW-SRRG---------GVDLTDTAQVLERITRFEPDAVIHSAAMSTVAECFRNPEGARQANPRASGLLAKWCGQNRVRLVAVSTDMVFDGEGAPYDEDSEPNPCTEYGRSKVAAEQAVLE-NQQALVVRVALLCGRTRTQNRSFFDGLLDQLQERKVVRAFADEWRTPLFLGDAASALLDLAQTKPTGVLHLGGPERLSRFEMCQRIAALVGAPADIVEPSSRLDGGFDEPRQRDLSLGSRRVQEL 789
            LITGA G+ G  L+ +  + G+   GW S RG          VDL D A  L  +    P  ++H+AA+++V   + +P  AR+ N  A+  LA+W   +  RL+ +STDMVFDG  APYDE +   P + YGRSK  AE+AV      AL+VR+ LL G       + F G L  L+E + +R F DE+RTP+ LGDAA A+++ A +  TGVLH+ GP+RLSR+EM +  A  +      + P SR + G  EPR  DLSL  RR + L
Sbjct:   16 LITGAGGQFGSVLLAQLVSAGYDARGWVSPRGPKPRAGRCEAVDLCDAASGLALLDSTRPRVIVHAAAVTSVQAAYDDPGAARRTNVDATKRLAEWAAGHDARLIYISTDMVFDGSAAPYDESAATCPVSRYGRSKADAEEAVRAIGGDALIVRLPLLYGLPAVDRPTTFVGQLAALREGRALRLFTDEFRTPIELGDAARAVIEAAASTATGVLHVAGPQRLSRYEMIEIAARALAIERPNLTPISRTEAGGPEPRPADLSLLCRRFELL 286          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10572.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7G9NXR3_9BACT2.890e-6645.69dTDP-4-dehydrorhamnose reductase n=1 Tax=Planctomy... [more]
A0A5B9W272_9BACT5.510e-6342.66dTDP-4-dehydrorhamnose reductase n=1 Tax=Aquisphae... [more]
UPI0013EC592B1.100e-6243.48SDR family oxidoreductase n=1 Tax=Aquisphaera sp. ... [more]
UPI0013EA50354.040e-6142.39sugar nucleotide-binding protein n=1 Tax=Paludisph... [more]
A0A518H6V3_9BACT5.600e-6040.85dTDP-4-dehydrorhamnose reductase n=1 Tax=Tautonia ... [more]
UPI0013ED85033.640e-5939.64SDR family oxidoreductase n=1 Tax=unclassified Pal... [more]
A0A1M3N8Z1_9DELT4.600e-5945.05dTDP-4-dehydrorhamnose reductase n=1 Tax=Myxococca... [more]
A0A1U7GJQ1_9BACT8.660e-5939.65NAD(P)-dependent oxidoreductase n=1 Tax=Planctomyc... [more]
A0A3N5RR15_9PLAN1.420e-5742.49dTDP-4-dehydrorhamnose reductase (Fragment) n=1 Ta... [more]
A0A3A0D0B9_9BACT1.680e-5641.33dTDP-4-dehydrorhamnose reductase n=2 Tax=Planctomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10572contigP-wetherbeei_contig10572:691..1524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog575540.Isop_2639
PFAMsRmlD_sub_bind
Model size834
Max annot lvl203682|Planctomycetes
KEGG rclassRC00182
KEGG koko:K00067
KEGG ReactionR02777
KEGG Pathwayko00521,ko00523,ko01130,map00521,map00523,map01130
KEGG ModuleM00793
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.19e-56
EggNOG OGsCOG1091@1|root,COG1091@2|Bacteria,2IWYS@203682|Planctomycetes
EC1.1.1.133
DescriptiondTDP-4-dehydrorhamnose reductase
Cds size834
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185875.5178747-CDS-P-wetherbeei_contig10572:690..15241683185875.5178747-CDS-P-wetherbeei_contig10572:690..1524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10572 691..1524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10572.1.1prot_P-wetherbeei_contig10572.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10572 691..1524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10572.1.1

>prot_P-wetherbeei_contig10572.1.1 ID=prot_P-wetherbeei_contig10572.1.1|Name=mRNA_P-wetherbeei_contig10572.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=278bp
MKLLITGASGKLGGYLMDEARARGFTVEGWSRRGGVDLTDTAQVLERITR
FEPDAVIHSAAMSTVAECFRNPEGARQANPRASGLLAKWCGQNRVRLVAV
STDMVFDGEGAPYDEDSEPNPCTEYGRSKVAAEQAVLENQQALVVRVALL
CGRTRTQNRSFFDGLLDQLQERKVVRAFADEWRTPLFLGDAASALLDLAQ
TKPTGVLHLGGPERLSRFEMCQRIAALVGAPADIVEPSSRLDGGFDEPRQ
RDLSLGSRRVQELLPHFRPRSLEQAFL*
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mRNA from alignment at P-wetherbeei_contig10572:691..1524-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10572.1.1 ID=mRNA_P-wetherbeei_contig10572.1.1|Name=mRNA_P-wetherbeei_contig10572.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=834bp|location=Sequence derived from alignment at P-wetherbeei_contig10572:691..1524- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACTGCTTATCACGGGCGCCAGCGGAAAGCTGGGCGGATATCTTAT GGACGAAGCCAGGGCTCGTGGATTTACTGTCGAGGGCTGGAGCCGGAGGG GCGGCGTCGACCTCACGGATACCGCCCAGGTCCTCGAGCGCATCACCCGC TTCGAGCCCGATGCCGTCATCCACAGCGCCGCTATGTCGACGGTCGCCGA ATGCTTCCGCAATCCCGAAGGCGCGCGTCAGGCCAATCCTCGTGCTTCGG GCCTCCTGGCTAAATGGTGCGGCCAGAATCGCGTGCGTCTGGTCGCGGTT TCCACCGATATGGTCTTCGACGGGGAGGGCGCGCCCTACGACGAGGACTC GGAGCCCAATCCGTGCACGGAGTATGGGCGTAGCAAGGTGGCCGCGGAGC AGGCCGTGCTCGAAAATCAGCAGGCTCTGGTGGTTCGGGTCGCCCTTCTG TGCGGCCGGACTCGCACCCAGAATCGCAGCTTCTTCGATGGACTCCTCGA TCAGCTGCAAGAGCGCAAGGTTGTGCGGGCTTTTGCCGACGAGTGGCGGA CGCCGCTTTTCCTGGGTGATGCCGCGTCGGCGCTTTTGGATCTGGCGCAG ACGAAGCCCACCGGAGTTTTGCACCTGGGAGGCCCGGAGCGACTCTCTCG CTTTGAGATGTGCCAGCGCATTGCGGCTCTGGTAGGGGCCCCGGCAGATA TTGTCGAGCCCTCATCCCGGTTGGACGGGGGCTTTGACGAGCCGCGCCAG CGCGATCTCTCGCTGGGTTCTCGGAGGGTGCAAGAGTTGCTGCCGCATTT TCGCCCGCGCTCCCTCGAGCAAGCGTTTTTGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10572:691..1524-

>mRNA_P-wetherbeei_contig10572.1.1 ID=mRNA_P-wetherbeei_contig10572.1.1|Name=mRNA_P-wetherbeei_contig10572.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=834bp|location=Sequence derived from alignment at P-wetherbeei_contig10572:691..1524- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACTGCTTATCACGGGCGCCAGCGGAAAGCTGGGCGGATATCTTAT
GGACGAAGCCAGGGCTCGTGGATTTACTGTCGAGGGCTGGAGCCGGAGGG
GCGGCGTCGACCTCACGGATACCGCCCAGGTCCTCGAGCGCATCACCCGC
TTCGAGCCCGATGCCGTCATCCACAGCGCCGCTATGTCGACGGTCGCCGA
ATGCTTCCGCAATCCCGAAGGCGCGCGTCAGGCCAATCCTCGTGCTTCGG
GCCTCCTGGCTAAATGGTGCGGCCAGAATCGCGTGCGTCTGGTCGCGGTT
TCCACCGATATGGTCTTCGACGGGGAGGGCGCGCCCTACGACGAGGACTC
GGAGCCCAATCCGTGCACGGAGTATGGGCGTAGCAAGGTGGCCGCGGAGC
AGGCCGTGCTCGAAAATCAGCAGGCTCTGGTGGTTCGGGTCGCCCTTCTG
TGCGGCCGGACTCGCACCCAGAATCGCAGCTTCTTCGATGGACTCCTCGA
TCAGCTGCAAGAGCGCAAGGTTGTGCGGGCTTTTGCCGACGAGTGGCGGA
CGCCGCTTTTCCTGGGTGATGCCGCGTCGGCGCTTTTGGATCTGGCGCAG
ACGAAGCCCACCGGAGTTTTGCACCTGGGAGGCCCGGAGCGACTCTCTCG
CTTTGAGATGTGCCAGCGCATTGCGGCTCTGGTAGGGGCCCCGGCAGATA
TTGTCGAGCCCTCATCCCGGTTGGACGGGGGCTTTGACGAGCCGCGCCAG
CGCGATCTCTCGCTGGGTTCTCGGAGGGTGCAAGAGTTGCTGCCGCATTT
TCGCCCGCGCTCCCTCGAGCAAGCGTTTTTGTAA
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