mRNA_P-wetherbeei_contig10571.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10571.1.1
Unique NamemRNA_P-wetherbeei_contig10571.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10571.1.1 vs. uniprot
Match: A0A7S1XTE7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTE7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.690e-9
Identity = 37/95 (38.95%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:  298 RLPPPPRPVFPVVVRFAQDELGEMLEVRSALWRKPEMRPIVADVWVGSLYAEAALSMLAPAAAYNSARCRWLAHVALDYFLPAYTVLQGLGALVP 582
            RLPP P P    ++ F ++ +  +L++R  ++     R ++ DVWVGS   EA +S+L P+AAYNS   R+   V LD+ +P + VL G+G +VP
Sbjct:   22 RLPPTPVPRRAYLLVFDEEHIHILLQMRKRIYDDDRTRRLIRDVWVGSCITEALMSLL-PSAAYNSLALRFTLLVLLDFGVPLFAVLNGIGMVVP 115
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BLAST of mRNA_P-wetherbeei_contig10571.1.1 vs. uniprot
Match: A0A836C8H9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8H9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.880e-8
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:  499 RCRWLAHVALDYFLPAYTVLQGLGALVPVVWRQGAALLVRLHADAGVRVLIAALHVNSQIARAV 690
            R RW  HV LDYFLPAYTVLQGL +L+P + R  AALL  L  D GVR+ +  L    Q+A AV
Sbjct:  434 RLRWGLHVLLDYFLPAYTVLQGLCSLLPFLGRHAAALLALLRGDVGVRLALRVLRAQRQVAEAV 497
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10571.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S1XTE7_9STRA2.690e-938.95Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A836C8H9_9STRA2.880e-856.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10571contigP-wetherbeei_contig10571:452..1591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size843
Hectar predicted targeting categoryother localisation
Exons2
Cds size840
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185875.4813387-CDS-P-wetherbeei_contig10571:451..11261683185875.4813387-CDS-P-wetherbeei_contig10571:451..1126Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10571 452..1126 +
1683185875.4908798-CDS-P-wetherbeei_contig10571:1424..15891683185875.4908798-CDS-P-wetherbeei_contig10571:1424..1589Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10571 1425..1589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10571.1.1prot_P-wetherbeei_contig10571.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10571 452..1589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10571.1.1

>prot_P-wetherbeei_contig10571.1.1 ID=prot_P-wetherbeei_contig10571.1.1|Name=mRNA_P-wetherbeei_contig10571.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=280bp
GGGGGGSSISGNSGSAAGLDESTRSPCTTGSTRFLELLSLAAREAQARAV
AIAPATKKAAASAAAAAATAALATAAAAAAAASWPRRLTAEGSLLRRPWR
LPPPPRPVFPVVVRFAQDELGEMLEVRSALWRKPEMRPIVADVWVGSLYA
EAALSMLAPAAAYNSARCRWLAHVALDYFLPAYTVLQGLGALVPVVWRQG
AALLVRLHADAGVRVLIAALHVNSQIARAVLSQLAWLMLCILRTAAGLLD
DQAVRSLVRWGRAAAAAVAAPVGAAWAAAW
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mRNA from alignment at P-wetherbeei_contig10571:452..1591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10571.1.1 ID=mRNA_P-wetherbeei_contig10571.1.1|Name=mRNA_P-wetherbeei_contig10571.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1140bp|location=Sequence derived from alignment at P-wetherbeei_contig10571:452..1591+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCGGCGGCGGTAGCAGCATCAGCGGCAATAGCGGGAGCGCCGC
GGGCCTCGACGAAAGCACCAGGAGTCCCTGCACCACCGGCAGTACTCGTT
TCCTCGAACTTTTGAGCCTCGCCGCGCGTGAGGCGCAGGCTCGAGCAGTT
GCCATTGCACCGGCGACGAAGAAGGCCGCTGCCTCCGCCGCCGCCGCCGC
GGCCACGGCAGCATTGGCCACGGCTGCCGCCGCCGCCGCCGCCGCGTCAT
GGCCCCGTCGGCTCACCGCGGAGGGCTCGCTACTGCGGCGGCCTTGGCGC
CTGCCGCCGCCACCACGGCCGGTCTTCCCGGTAGTGGTGCGCTTCGCACA
GGACGAATTGGGAGAGATGCTGGAGGTCCGGTCGGCCCTCTGGCGGAAGC
CCGAGATGCGCCCGATCGTCGCTGACGTGTGGGTCGGCAGCCTCTACGCG
GAGGCGGCGCTCTCCATGCTGGCGCCCGCCGCCGCCTACAACTCGGCGCG
CTGCCGCTGGCTGGCGCACGTGGCGCTGGACTACTTCCTCCCGGCGTACA
CCGTGTTGCAGGGGCTCGGGGCGCTGGTGCCGGTGGTGTGGCGGCAGGGC
GCGGCGCTGCTGGTGCGGCTGCACGCCGACGCAGGGGTGCGCGTGCTCAT
TGCGGCGCTCCACGTCAACTCGCAGGTATGCGCTGCAGTATGCCTTCGTT
GTTGCTGTGTTGGTTTGTTTTGCTTTGCGGAAGATGCGGTGCATGCAGCG
GGTGTGCCTGCCATTCTGTTTGTGTGTGGACTCGTAAGCACCTGGGTCTT
CACTGTGATCTCTATGAGGCAAGTATTGTCCTTCGAAACTGATAATCGGT
CATGGGTCGATGCCCATCTCAGTATACTACATCCTCTTGACACCTCGTCC
TCACCCGCTTTTGCCTGCTCTCTTTCTTTCTCTCTATTGCGACAAATGGG
CGCTTACGCCACCCGGCGAACAGATCGCGCGGGCGGTGCTGTCGCAGCTG
GCGTGGCTGATGCTGTGCATCCTTCGGACGGCTGCTGGCCTTCTGGACGA
CCAGGCGGTCCGGTCGCTGGTCCGCTGGGGCCGCGCGGCGGCGGCGGCGG
TGGCGGCGCCGGTCGGGGCGGCCTGGGCAGCAGCGTGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10571:452..1591+

>mRNA_P-wetherbeei_contig10571.1.1 ID=mRNA_P-wetherbeei_contig10571.1.1|Name=mRNA_P-wetherbeei_contig10571.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig10571:452..1591+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCGGCGGCGGTAGCAGCATCAGCGGCAATAGCGGGAGCGCCGC
GGGCCTCGACGAAAGCACCAGGAGTCCCTGCACCACCGGCAGTACTCGTT
TCCTCGAACTTTTGAGCCTCGCCGCGCGTGAGGCGCAGGCTCGAGCAGTT
GCCATTGCACCGGCGACGAAGAAGGCCGCTGCCTCCGCCGCCGCCGCCGC
GGCCACGGCAGCATTGGCCACGGCTGCCGCCGCCGCCGCCGCCGCGTCAT
GGCCCCGTCGGCTCACCGCGGAGGGCTCGCTACTGCGGCGGCCTTGGCGC
CTGCCGCCGCCACCACGGCCGGTCTTCCCGGTAGTGGTGCGCTTCGCACA
GGACGAATTGGGAGAGATGCTGGAGGTCCGGTCGGCCCTCTGGCGGAAGC
CCGAGATGCGCCCGATCGTCGCTGACGTGTGGGTCGGCAGCCTCTACGCG
GAGGCGGCGCTCTCCATGCTGGCGCCCGCCGCCGCCTACAACTCGGCGCG
CTGCCGCTGGCTGGCGCACGTGGCGCTGGACTACTTCCTCCCGGCGTACA
CCGTGTTGCAGGGGCTCGGGGCGCTGGTGCCGGTGGTGTGGCGGCAGGGC
GCGGCGCTGCTGGTGCGGCTGCACGCCGACGCAGGGGTGCGCGTGCTCAT
TGCGGCGCTCCACGTCAACTCGCAGATCGCGCGGGCGGTGCTGTCGCAGC
TGGCGTGGCTGATGCTGTGCATCCTTCGGACGGCTGCTGGCCTTCTGGAC
GACCAGGCGGTCCGGTCGCTGGTCCGCTGGGGCCGCGCGGCGGCGGCGGC
GGTGGCGGCGCCGGTCGGGGCGGCCTGGGCAGCAGCGTGG
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