mRNA_P-wetherbeei_contig10562.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10562.1.1
Unique NamemRNA_P-wetherbeei_contig10562.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10562.1.1 vs. uniprot
Match: A0A6H5KTY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY0_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.200e-20
Identity = 48/103 (46.60%), Postives = 65/103 (63.11%), Query Frame = 3 
Query:  420 DDTQSPYGPSRLGTIEDPPTPVGRMHDRVNYLRRRCIDGLGSERFTTALALLRTLADDAGAVVMYEGRAYGGQDDDEVRRLLEKVIGADKLQYWGLLDQLLLM 728
            +D   PY  S L  I D PTPVG + DRV ++ ++C DGLG  +F  AL LL+ + +    V + +G  Y G ++D+V ++L KVIG  KL YW LLDQLLLM
Sbjct:    6 EDEPVPYCQSHLEEIHDAPTPVGNLVDRVQFITKKCSDGLGEAKFAKALDLLKKMQEGDCRVTL-DGVEYDGNEEDDVEKVLVKVIGKHKLHYWNLLDQLLLM 107
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BLAST of mRNA_P-wetherbeei_contig10562.1.1 vs. uniprot
Match: D8LSH1_ECTSI (Serine/threonine protein kinase, possibly NIMA-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH1_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.030e-17
Identity = 48/103 (46.60%), Postives = 65/103 (63.11%), Query Frame = 3 
Query:  420 DDTQSPYGPSRLGTIEDPPTPVGRMHDRVNYLRRRCIDGLGSERFTTALALLRTLADDAGAVVMYEGRAYGGQDDDEVRRLLEKVIGADKLQYWGLLDQLLLM 728
            +D   PY  S L  I D PTPVG + DRV ++ ++C DGLG  +F  AL LL+ +  +   +V  +G  Y G ++D+V ++L KVIG  KL YW LLDQLLLM
Sbjct:  777 EDEPVPYCQSHLEEIHDAPTPVGNLVDRVQFITKKCSDGLGEAKFAKALDLLKKM-QEGDCMVTLDGVEYDGNEEDDVEKVLVKVIGKHKLHYWNLLDQLLLM 878
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BLAST of mRNA_P-wetherbeei_contig10562.1.1 vs. uniprot
Match: A0A8J2SGK3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGK3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 6.290e-5
Identity = 32/98 (32.65%), Postives = 50/98 (51.02%), Query Frame = 3 
Query:  462 IEDPPTPVGRMHDRVNYLRRRCIDGLGSERFTTALALLRTLADDAGAVVMYE---------GRAYGGQDDDEVRRLLEKVIGADKLQYWGLLDQLLLM 728
            + D P+P GR+  R+  L+ RCI  +G+ +F  A   L+++ D     + Y+         G AY  Q D E +  L  ++G DK+    L+DQLL M
Sbjct:  904 LADAPSPSGRLEQRLQILKERCIGQMGARQFRRAYDYLKSVQDADDDALDYDVDDAGLEIGGDAYDEQADAETQAKLLAILGPDKVHLAPLVDQLLFM 1001
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BLAST of mRNA_P-wetherbeei_contig10562.1.1 vs. uniprot
Match: A0A7S1CGE0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CGE0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.170e-5
Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 3 
Query:  447 SRLGTIEDPPTPVGRMHDRVNYLRRRCIDGLGSERFTTALALLRTLADDAGAVVMYEGRAYGGQDDDEVRRLLEKVIGADKL--QYWGLLDQLLLMGA*ETSY 749
            S +  +E PPTP GR+ DR+  +R RC+  LG E F      L+    +       E    G +DD  V + L K++G  +   QY  L++QLLLM   E SY
Sbjct:  312 SMMAELEAPPTPSGRLEDRMRRVRDRCVHDLGPELFEKVYFFLKAKLWEPEEASGMEVGGEGYEDDVVVEQGLRKLLGDRRRVQQYRELVEQLLLM---ENSY 411
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10562.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KTY0_9PHAE3.200e-2046.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSH1_ECTSI1.030e-1746.60Serine/threonine protein kinase, possibly NIMA-lik... [more]
A0A8J2SGK3_9STRA6.290e-532.65Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1CGE0_9STRA9.170e-535.92Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10562contigP-wetherbeei_contig10562:957..2321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009037732.1
PFAMsBeta_helix,Pkinase
Model size1365
Max annot lvl2759|Eukaryota
KEGG koko:K08857
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.51e-06
EggNOG OGsKOG0589@1|root,KOG0589@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
Cds size642
COG categoryT
BRITEko00000,ko01000,ko01001,ko03036,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185875.2234786-UTR-P-wetherbeei_contig10562:956..10511683185875.2234786-UTR-P-wetherbeei_contig10562:956..1051Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10562 957..1051 +
1683185875.2638443-UTR-P-wetherbeei_contig10562:1693..23211683185875.2638443-UTR-P-wetherbeei_contig10562:1693..2321Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10562 1694..2321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185875.2441041-CDS-P-wetherbeei_contig10562:1051..16931683185875.2441041-CDS-P-wetherbeei_contig10562:1051..1693Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10562 1052..1693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10562.1.1prot_P-wetherbeei_contig10562.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10562 1052..1693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10562.1.1

>prot_P-wetherbeei_contig10562.1.1 ID=prot_P-wetherbeei_contig10562.1.1|Name=mRNA_P-wetherbeei_contig10562.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=214bp
MPARGGKNGSDSGNGGSGNGGGKEQGKDAVGLGQVKLSVNMGTLRPLSDG
DGVGGVGDGDDSPSSGYGTSGLSLEEEEDNFPGSPGDDSGDGDAGGADGG
GVLSDDGGDDTQSPYGPSRLGTIEDPPTPVGRMHDRVNYLRRRCIDGLGS
ERFTTALALLRTLADDAGAVVMYEGRAYGGQDDDEVRRLLEKVIGADKLQ
YWGLLDQLLLMGA*
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mRNA from alignment at P-wetherbeei_contig10562:957..2321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10562.1.1 ID=mRNA_P-wetherbeei_contig10562.1.1|Name=mRNA_P-wetherbeei_contig10562.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1365bp|location=Sequence derived from alignment at P-wetherbeei_contig10562:957..2321+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAGCAGCTGCGGCTGGCGGAGAAGCGCTGCCAGGAACTGCGGCAGTCG
CTGCAGAAGAATGTGTCGTCGGCGCGCGGTCCGCCGCCGCCGGCCATGCC
GGCCCGTGGCGGCAAGAACGGCAGTGATAGCGGTAACGGCGGCAGCGGCA
ATGGCGGTGGCAAGGAGCAGGGGAAGGACGCCGTCGGCCTGGGGCAGGTC
AAGCTGTCCGTAAATATGGGCACGCTGCGGCCGCTGTCGGACGGCGACGG
AGTCGGCGGCGTCGGCGACGGCGACGACTCGCCGTCTTCGGGCTACGGCA
CCAGCGGCCTGTCCCTGGAAGAGGAGGAAGACAACTTCCCGGGCTCCCCC
GGCGACGACTCTGGCGACGGCGATGCCGGCGGCGCCGATGGCGGCGGCGT
CCTCAGCGACGACGGCGGCGACGACACGCAGTCGCCGTACGGCCCATCCC
GCTTGGGGACCATCGAGGACCCGCCGACGCCCGTCGGCCGCATGCACGAC
CGCGTCAACTACCTGCGCCGGCGCTGCATTGACGGACTCGGCTCGGAGAG
GTTCACGACGGCACTGGCGCTCCTTCGAACGCTGGCGGACGACGCCGGCG
CCGTGGTGATGTACGAAGGGCGCGCCTACGGCGGCCAGGACGACGACGAG
GTGCGTCGGCTGCTGGAGAAGGTCATCGGCGCCGACAAGCTGCAGTACTG
GGGCCTGCTCGACCAGCTCCTGCTCATGGGGGCGTGAGAGACGAGCTACG
AACGACGCGGAGCAACGTGCGTCGCAGCGACGGTGTGGGTGCAAAGGTGA
CGGTTGCGGCGGCGGTTGTGACATGGCCGCGGTTGCACCGCGCGGTTGAC
CGCGACGAGGGTCTTGCCGCCGCCGCGACTCGACTGCGGTAGTTAAGCAC
ATTGTTGCAGCCATCGGCTCCCGTGATGCTCCGCCGCCGCCGCAGATGCC
TTTGTTTCGGCCTGGGATCCTACATGTGTATTGAAGGTGGCAGCTTGAAG
GCTTGGTCGCCAGACCTAAACAGGCAGCGGCCAATTGAATTTAGGATGCG
GCGGCAGTGCCCTAACACGCCTGGCTGGCCACAATTTGAGAGTTCAACCG
TGTGGAGTGTACAACCTGCCGGCCGTCTTGGCGGCGGCAGCGGAAATGGC
GGCTGTGCCGCTAGAGGCTCCATTTTCTGCGCGCGGACGCTTTGCCCGCG
CGCTTCCCGACGGGCAGGACAGAAAGATTTTTTACATGGCGTTTCTGTGG
ATGTGTGTGGTTTGTGCGGCACGAAGGAGGCAGATTATAGGGGTCATCAG
AAACGGAACAATGGGAGAAGGGCCGCAACCGACGTTGCGGTTGCAGCGGG
ACTGGTCGGGAAGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10562:957..2321+

>mRNA_P-wetherbeei_contig10562.1.1 ID=mRNA_P-wetherbeei_contig10562.1.1|Name=mRNA_P-wetherbeei_contig10562.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=642bp|location=Sequence derived from alignment at P-wetherbeei_contig10562:957..2321+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGCCCGTGGCGGCAAGAACGGCAGTGATAGCGGTAACGGCGGCAG
CGGCAATGGCGGTGGCAAGGAGCAGGGGAAGGACGCCGTCGGCCTGGGGC
AGGTCAAGCTGTCCGTAAATATGGGCACGCTGCGGCCGCTGTCGGACGGC
GACGGAGTCGGCGGCGTCGGCGACGGCGACGACTCGCCGTCTTCGGGCTA
CGGCACCAGCGGCCTGTCCCTGGAAGAGGAGGAAGACAACTTCCCGGGCT
CCCCCGGCGACGACTCTGGCGACGGCGATGCCGGCGGCGCCGATGGCGGC
GGCGTCCTCAGCGACGACGGCGGCGACGACACGCAGTCGCCGTACGGCCC
ATCCCGCTTGGGGACCATCGAGGACCCGCCGACGCCCGTCGGCCGCATGC
ACGACCGCGTCAACTACCTGCGCCGGCGCTGCATTGACGGACTCGGCTCG
GAGAGGTTCACGACGGCACTGGCGCTCCTTCGAACGCTGGCGGACGACGC
CGGCGCCGTGGTGATGTACGAAGGGCGCGCCTACGGCGGCCAGGACGACG
ACGAGGTGCGTCGGCTGCTGGAGAAGGTCATCGGCGCCGACAAGCTGCAG
TACTGGGGCCTGCTCGACCAGCTCCTGCTCATGGGGGCGTGA
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