mRNA_P-wetherbeei_contig10555.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10555.1.1
Unique NamemRNA_P-wetherbeei_contig10555.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10555.1.1 vs. uniprot
Match: A0A836CBT5_9STRA (Mgm1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.430e-14
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   22 QAYWRVSSKRVCDNVCMLLETSFLGEVPNDLEAQLLTLAQRMPDDGVSSLFKEDAALVNR 201
            QAYWRV+SKRVCDN CMLLE SFL  VP+ LEA LL+ AQ +    +++  +EDAA+V R
Sbjct:  610 QAYWRVTSKRVCDNACMLLEASFLAAVPDALEAALLSHAQTLDARALAAALQEDAAIVER 669
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BLAST of mRNA_P-wetherbeei_contig10555.1.1 vs. uniprot
Match: D8LJA2_ECTSI (Mgm1 homolog, dynamin-related GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJA2_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.360e-9
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   22 QAYWRVSSKRVCDNVCMLLETSFLGEVPNDLEAQLLTLAQRMPDD 156
            QAYWRV+SKRV DN CMLLETSF G+V + LE QLL L Q +  +
Sbjct:  610 QAYWRVTSKRVVDNACMLLETSFFGQVVDRLETQLLALTQAITQE 654
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BLAST of mRNA_P-wetherbeei_contig10555.1.1 vs. uniprot
Match: A0A482SMV3_9ARCH (GED domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMV3_9ARCH)

HSP 1 Score: 53.1 bits (126), Expect = 1.940e-7
Identity = 23/67 (34.33%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    1 MDQTKQKQAYWRVSSKRVCDNVCMLLETSFLGEVPNDLEAQLLTLAQRMPDDGVSSLFKEDAALVNR 201
            M+     Q YW ++S+R+ DNVCML++  F+  V ++L+ QL   +  +  + V  + KED  +V R
Sbjct:   13 MEMVTMLQGYWDIASRRLVDNVCMLVDKDFVDHVLSELDTQLTVYSMGLSKNEVKDVMKEDRYIVQR 79
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BLAST of mRNA_P-wetherbeei_contig10555.1.1 vs. uniprot
Match: A0A7S2E1W6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E1W6_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.990e-6
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   25 AYWRVSSKRVCDNVCMLLETSFLGEVPNDLEAQLLTLAQRMPDDGVSSLFKE 180
            AYWR+SSKR+ +NV M LET  +  +  DLE+ L++  Q +P   +  LFKE
Sbjct:  119 AYWRLSSKRLTENVVMSLETLVIQRLATDLESMLISAVQGLPVGQLEDLFKE 170
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BLAST of mRNA_P-wetherbeei_contig10555.1.1 vs. uniprot
Match: A0A7S2BUL6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BUL6_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.560e-5
Identity = 22/58 (37.93%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   25 AYWRVSSKRVCDNVCMLLETSFLGEVPNDLEAQLLTLAQRMPDDGVSSLFKEDAALVN 198
            AYWR+S+KR+ +NVCM +E   L  + +D+E++LL++ Q    + V+ LF E + + +
Sbjct:   24 AYWRLSAKRLTENVCMSVEAHVLTRLSDDIESELLSVMQIKTPELVAELFHEPSEVTD 81
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10555.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CBT5_9STRA2.430e-1460.00Mgm1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
D8LJA2_ECTSI1.360e-964.44Mgm1 homolog, dynamin-related GTPase n=2 Tax=Ectoc... [more]
A0A482SMV3_9ARCH1.940e-734.33GED domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A7S2E1W6_9STRA2.990e-646.15Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2BUL6_9STRA1.560e-537.93Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10555contigP-wetherbeei_contig10555:1634..1837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJA2
PFAMsBACK,BTB,Dynamin_M,Dynamin_N,F5_F8_type_C,GED,Methyltransf_FA
Model size204
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K05288,ko:K20291
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030162,GO:0030163,GO:0031461,GO:0031625,GO:0032991,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050789,GO:0051171,GO:0051246,GO:0051603,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons1
Evalue2.23e-10
EggNOG OGsCOG0699@1|root,COG5021@1|root,KOG0446@2759|Eukaryota,KOG4276@2759|Eukaryota
Descriptionprotein ubiquitination
Cds size204
COG categoryO
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185874.9104242-CDS-P-wetherbeei_contig10555:1633..18371683185874.9104242-CDS-P-wetherbeei_contig10555:1633..1837Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10555 1634..1837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10555.1.1prot_P-wetherbeei_contig10555.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10555 1634..1837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10555.1.1

>prot_P-wetherbeei_contig10555.1.1 ID=prot_P-wetherbeei_contig10555.1.1|Name=mRNA_P-wetherbeei_contig10555.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
MDQTKQKQAYWRVSSKRVCDNVCMLLETSFLGEVPNDLEAQLLTLAQRMP
DDGVSSLFKEDAALVNR*
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mRNA from alignment at P-wetherbeei_contig10555:1634..1837+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10555.1.1 ID=mRNA_P-wetherbeei_contig10555.1.1|Name=mRNA_P-wetherbeei_contig10555.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig10555:1634..1837+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCAAACGAAACAAAAGCAGGCGTACTGGCGGGTGAGCTCCAAGCG
GGTGTGCGACAATGTGTGCATGCTGCTTGAGACGTCCTTCCTGGGGGAGG
TGCCCAACGATTTGGAGGCGCAGCTGCTGACGCTCGCGCAGCGCATGCCC
GACGACGGCGTCTCCTCCCTCTTCAAGGAGGACGCCGCCCTCGTTAACAG
GTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10555:1634..1837+

>mRNA_P-wetherbeei_contig10555.1.1 ID=mRNA_P-wetherbeei_contig10555.1.1|Name=mRNA_P-wetherbeei_contig10555.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig10555:1634..1837+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCAAACGAAACAAAAGCAGGCGTACTGGCGGGTGAGCTCCAAGCG
GGTGTGCGACAATGTGTGCATGCTGCTTGAGACGTCCTTCCTGGGGGAGG
TGCCCAACGATTTGGAGGCGCAGCTGCTGACGCTCGCGCAGCGCATGCCC
GACGACGGCGTCTCCTCCCTCTTCAAGGAGGACGCCGCCCTCGTTAACAG
GTAA
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