mRNA_P-wetherbeei_contig10553.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10553.1.1
Unique NamemRNA_P-wetherbeei_contig10553.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10553.1.1 vs. uniprot
Match: A0A6H5JGS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS5_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.250e-6
Identity = 42/144 (29.17%), Postives = 61/144 (42.36%), Query Frame = 3 
Query:  123 TADRKMSARGAGVTPIHWAVFQGKKEKLREMLDARDPDSGERQFDVNAKDKYGQTPAHMACYR-GAADLLQILIDAGADVMCVXXXXXXXXXXXXXXXXXXXXXXXXXXDVRVGSANTAGEKPADVATQHAPDELRDAMLDYLK 551
            ++  K      GV+ +H AVFQGK+EK R++L    PD       VN  DK+GQTP H+AC+R G    LQ+L    A++  +                           + V   N  G  P D+   H P + +  M   L+
Sbjct:    6 SSKHKKLMEAGGVSKLHLAVFQGKQEKARKLLQKGCPD-------VNRGDKFGQTPLHIACHREGLLGCLQLLAAHEANLKALDANGNTALHSAAGSGAAAAAKFLLGRGLSVADRNKDGHTPMDICMLHCPADKKRTMQLLLE 142
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BLAST of mRNA_P-wetherbeei_contig10553.1.1 vs. uniprot
Match: D7FI34_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI34_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 2.310e-5
Identity = 48/177 (27.12%), Postives = 81/177 (45.76%), Query Frame = 3 
Query:  153 AGVTPIHWAVFQGKKEKLREMLDARDPDSGERQFDVNAKDKYGQTPAHMACYRGAADLLQILIDAGADVMCVXXXXXXXXXXXXXXXXXXXXXXXXXX-DVRVGSANTAGEKPADVATQHAPDELRDAMLDYLKKTEAEQAAAPAVAATSAGETNGRSDALVQQLSSLLGQLSASPA 680
            A +  +H A+FQG   K+ E++   D  +      ++  D++GQTP H+ACY+G+  + ++L++ GA++  V                           DV V  +N  G  P  +  Q+ P  L++ ML  LK+    QA A A       E     +A+  QL+ L  +L+A+ A
Sbjct:   48 ASLQELHLAIFQGDTAKVEEVVARGDARA------LSEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTV--SNFDGLTPQRLCEQYCPPRLKERMLQLLKEAALAQAKATA-RKNQVAEEQVNIEAVYHQLAMLRSKLAATAA 215
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10553.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGS5_9PHAE1.250e-629.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI34_ECTSI2.310e-527.12Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10553contigP-wetherbeei_contig10553:273..2324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FI34
PFAMsAnk_2
Model size1699
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.6e-06
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-10_002820.1
Descriptionprotein ubiquitination
Cds size1017
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185874.8569093-UTR-P-wetherbeei_contig10553:272..8171683185874.8569093-UTR-P-wetherbeei_contig10553:272..817Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10553 273..817 -
1683185874.8853824-UTR-P-wetherbeei_contig10553:2187..23241683185874.8853824-UTR-P-wetherbeei_contig10553:2187..2324Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10553 2188..2324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185874.8704662-CDS-P-wetherbeei_contig10553:817..14021683185874.8704662-CDS-P-wetherbeei_contig10553:817..1402Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10553 818..1402 -
1683185874.878098-CDS-P-wetherbeei_contig10553:1755..21871683185874.878098-CDS-P-wetherbeei_contig10553:1755..2187Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10553 1756..2187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10553.1.1prot_P-wetherbeei_contig10553.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10553 818..2187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10553.1.1

>prot_P-wetherbeei_contig10553.1.1 ID=prot_P-wetherbeei_contig10553.1.1|Name=mRNA_P-wetherbeei_contig10553.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=339bp
MSARGAGVTPIHWAVFQGKKEKLREMLDARDPDSGERQFDVNAKDKYGQT
PAHMACYRGAADLLQILIDAGADVMCVDKNGNTLAHAAAGSGSVDALTLL
VAADVRVGSANTAGEKPADVATQHAPDELRDAMLDYLKKTEAEQAAAPAV
AATSAGETNGRSDALVQQLSSLLGQLSASPAGSGSTGGGDDSDGGAPAPA
PLLAQRGPAGGSLAAQRVGTAAAVGAPAAGKAVPPAATTTLLMTLLEHKL
RQSDAQTEAIAAMATTIERLEATVAALDARVAVLERTADAVQVAAAAAAA
TAVPMTPGPAALTVPATADLAWRDSGGGENGDHGGTVP*
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mRNA from alignment at P-wetherbeei_contig10553:273..2324-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10553.1.1 ID=mRNA_P-wetherbeei_contig10553.1.1|Name=mRNA_P-wetherbeei_contig10553.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2052bp|location=Sequence derived from alignment at P-wetherbeei_contig10553:273..2324- (Phaeothamnion wetherbeei SAG_119_79)
AAAGACTAAAAGCAGGGCTTACACTGAAAAAGGCCCTCTTCGCAAAAAAA
AAAAATCAACCTCATCCGTTCTTCATAGGGATACCCGTGTAAAGCTCGTA
GTTCACAGAAAGGGGAGAGCCCACAGCCGACCGCAAAATGTCTGCCCGAG
GTGCAGGAGTAACGCCCATCCATTGGGCTGTCTTTCAGGGGAAGAAAGAG
AAGCTCAGAGAAATGCTGGATGCACGAGACCCAGACTCTGGAGAAAGGCA
GTTCGACGTCAACGCGAAAGACAAGTACGGCCAAACCCCTGCCCACATGG
CCTGTTACAGGGGGGCCGCCGACCTTTTGCAAATTTTGATAGATGCCGGC
GCCGACGTGATGTGTGTCGACAAGAATGGCAACACCCTTGCCCACGCCGC
CGCCGGCAGCGGCTCCGTCGACGCGCTGACGCTGCTGGTAGCGGCCGACG
TCCGCGTCGGCAGCGCCAACACGGCGGGTGAAAAGCCAGCGGACGTGGCG
ACGCAGCACGCCCCGGACGAGCTCCGGGACGCCATGCTGGACTACTTGAA
GAAGACAGAGGCCGAGCAGGTGAGACTTGAGCCAGATGATCGGCTGAGAG
AACGGCGGCGGGCCGAGTAGACTTTCACAACGATGGAAGCGTCTTTGTGC
GGGCTTTGCGTTCCTGCAACCCAGTAACTTCCCCCCCTTCACAAGCACCG
TTGTTCTTCGTCCTACAGTAGTGGGCCGTGGTGAACTATCTTGTTGGTTT
ACAGGGTGAAGTCGTTTGCCTCCACTCGTGCGTTGAAATGAGCTCACATT
ATGTTCCTATAGCGTGGAAGTTCTGTTCGTGAGATACGAGCTTAGTCTCT
CCAGGCAACTGACAGCAGCGTGCTCCTCTCCTGCTGCATTCGTGTCACGG
CTTCTTGCGGAAAACCGAACAGGCGGCGGCCCCGGCGGTCGCAGCTACAA
GTGCAGGAGAAACGAATGGCCGGAGCGATGCACTCGTTCAGCAGCTCTCG
TCTCTGCTGGGTCAGCTTTCCGCCTCCCCGGCAGGAAGCGGCAGCACCGG
TGGCGGCGACGACAGCGATGGCGGCGCTCCGGCACCCGCGCCCCTATTGG
CGCAGAGAGGCCCCGCTGGTGGATCTTTGGCGGCGCAGCGGGTAGGAACG
GCGGCGGCAGTGGGCGCTCCGGCCGCAGGAAAGGCTGTGCCACCAGCAGC
GACGACAACGCTGCTGATGACGCTGCTGGAGCACAAGCTTCGCCAGTCCG
ACGCCCAGACGGAGGCGATAGCAGCGATGGCGACGACGATCGAGCGGTTG
GAAGCAACTGTCGCCGCGCTGGACGCCCGCGTCGCCGTCCTCGAGCGAAC
CGCGGATGCCGTGCAGGTGGCGGCGGCGGCAGCAGCGGCAACGGCGGTTC
CGATGACGCCGGGACCGGCGGCTCTGACGGTACCCGCGACGGCGGACTTA
GCGTGGCGGGACAGCGGAGGCGGCGAGAATGGTGACCATGGCGGCACAGT
GCCGTAGCCCCTGCCAGAGTGTGGGCGGCGGTGGCAGCAATTGAAGGTGA
AGTTACACGCGGCTTTACTGCAACGCAAAACTATACAAATGTTTTTTAAC
TCGATTTATTTTCCAAATCGTTGACACTGTAGCTGGGGTTTTGCTTTCAT
TTTCGAGTCGAGGATGGCAGATTGCGTGCGTAAAGAGACTGTTTAGCTTG
CCTGATCTTGAAATGACAGCGTCACAGCCACTGGTTCGACGGGCGGCGCA
GGCGAAAGCCTGTGATTCTATCGATCGGCGCCGCGGAACTGCCGTCGGAT
GATCACATGGCCGGCTGCTGCTTGGCGCGAGATCGGCGGTAACAGCAGAG
TCGCCGCCACCGGCTGCTGCAGTGGCATAAGCGATGGCATAGGCACCATG
CGGGGCACAGCGTGGCGGCGACGGACGGCCCGCACTGTGACAGGCCTGGG
CGACTTATGGGCGGCCGACCAATTTGGAAAGCGATGCGATACGGATCCAG
TGTTATTTCCAAAGCAAAATACAGGAACGAGACCCCATTACCAACAGAGG
CC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10553:273..2324-

>mRNA_P-wetherbeei_contig10553.1.1 ID=mRNA_P-wetherbeei_contig10553.1.1|Name=mRNA_P-wetherbeei_contig10553.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1017bp|location=Sequence derived from alignment at P-wetherbeei_contig10553:273..2324- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTGCCCGAGGTGCAGGAGTAACGCCCATCCATTGGGCTGTCTTTCA
GGGGAAGAAAGAGAAGCTCAGAGAAATGCTGGATGCACGAGACCCAGACT
CTGGAGAAAGGCAGTTCGACGTCAACGCGAAAGACAAGTACGGCCAAACC
CCTGCCCACATGGCCTGTTACAGGGGGGCCGCCGACCTTTTGCAAATTTT
GATAGATGCCGGCGCCGACGTGATGTGTGTCGACAAGAATGGCAACACCC
TTGCCCACGCCGCCGCCGGCAGCGGCTCCGTCGACGCGCTGACGCTGCTG
GTAGCGGCCGACGTCCGCGTCGGCAGCGCCAACACGGCGGGTGAAAAGCC
AGCGGACGTGGCGACGCAGCACGCCCCGGACGAGCTCCGGGACGCCATGC
TGGACTACTTGAAGAAGACAGAGGCCGAGCAGGCGGCGGCCCCGGCGGTC
GCAGCTACAAGTGCAGGAGAAACGAATGGCCGGAGCGATGCACTCGTTCA
GCAGCTCTCGTCTCTGCTGGGTCAGCTTTCCGCCTCCCCGGCAGGAAGCG
GCAGCACCGGTGGCGGCGACGACAGCGATGGCGGCGCTCCGGCACCCGCG
CCCCTATTGGCGCAGAGAGGCCCCGCTGGTGGATCTTTGGCGGCGCAGCG
GGTAGGAACGGCGGCGGCAGTGGGCGCTCCGGCCGCAGGAAAGGCTGTGC
CACCAGCAGCGACGACAACGCTGCTGATGACGCTGCTGGAGCACAAGCTT
CGCCAGTCCGACGCCCAGACGGAGGCGATAGCAGCGATGGCGACGACGAT
CGAGCGGTTGGAAGCAACTGTCGCCGCGCTGGACGCCCGCGTCGCCGTCC
TCGAGCGAACCGCGGATGCCGTGCAGGTGGCGGCGGCGGCAGCAGCGGCA
ACGGCGGTTCCGATGACGCCGGGACCGGCGGCTCTGACGGTACCCGCGAC
GGCGGACTTAGCGTGGCGGGACAGCGGAGGCGGCGAGAATGGTGACCATG
GCGGCACAGTGCCGTAG
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