mRNA_P-wetherbeei_contig10549.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10549.1.1
Unique NamemRNA_P-wetherbeei_contig10549.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10549.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10549contigP-wetherbeei_contig10549:3..363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size362
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185874.603862-CDS-P-wetherbeei_contig10549:2..3231683185874.603862-CDS-P-wetherbeei_contig10549:2..323Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10549 3..323 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185874.614961-UTR-P-wetherbeei_contig10549:323..3631683185874.614961-UTR-P-wetherbeei_contig10549:323..363Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10549 324..363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10549.1.1prot_P-wetherbeei_contig10549.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10549 3..323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10549.1.1

>prot_P-wetherbeei_contig10549.1.1 ID=prot_P-wetherbeei_contig10549.1.1|Name=mRNA_P-wetherbeei_contig10549.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
MSSDAGPGGGTPDSASRRDGPGRITSCCRITKIPGGVNSGCRAGSGSSRQ
RHTAARITRRGVSKGATLSPLRCHRIAALPLLLWLLPPSSCYLLSAPRRP
PRIATAG
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mRNA from alignment at P-wetherbeei_contig10549:3..363-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10549.1.1 ID=mRNA_P-wetherbeei_contig10549.1.1|Name=mRNA_P-wetherbeei_contig10549.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=361bp|location=Sequence derived from alignment at P-wetherbeei_contig10549:3..363- (Phaeothamnion wetherbeei SAG_119_79)
ATAAGGAGCGCGCCGCCTACCTCCAGCGCCAGTCCCACGCATGAGTTCCG
ATGCAGGGCCTGGCGGAGGGACGCCTGATTCCGCCAGCAGGCGGGATGGG
CCGGGTCGCATCACGTCATGCTGCCGGATCACTAAAATCCCCGGCGGCGT
CAACAGCGGCTGCAGGGCTGGCAGCGGCTCTAGCAGGCAGCGGCATACCG
CAGCCCGCATCACGCGGCGCGGCGTATCGAAGGGCGCAACGCTGTCGCCG
CTCCGCTGCCATCGCATCGCCGCCCTCCCCCTACTACTGTGGCTGCTGCC
GCCAAGCTCTTGCTACCTGCTATCTGCGCCACGCCGGCCCCCACGAATCG
CGACGGCGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10549:3..363-

>mRNA_P-wetherbeei_contig10549.1.1 ID=mRNA_P-wetherbeei_contig10549.1.1|Name=mRNA_P-wetherbeei_contig10549.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig10549:3..363- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTTCCGATGCAGGGCCTGGCGGAGGGACGCCTGATTCCGCCAGCAG
GCGGGATGGGCCGGGTCGCATCACGTCATGCTGCCGGATCACTAAAATCC
CCGGCGGCGTCAACAGCGGCTGCAGGGCTGGCAGCGGCTCTAGCAGGCAG
CGGCATACCGCAGCCCGCATCACGCGGCGCGGCGTATCGAAGGGCGCAAC
GCTGTCGCCGCTCCGCTGCCATCGCATCGCCGCCCTCCCCCTACTACTGT
GGCTGCTGCCGCCAAGCTCTTGCTACCTGCTATCTGCGCCACGCCGGCCC
CCACGAATCGCGACGGCGGGG
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