mRNA_P-wetherbeei_contig10540.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10540.1.1
Unique NamemRNA_P-wetherbeei_contig10540.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10540.1.1 vs. uniprot
Match: D8LT51_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT51_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 2.100e-41
Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 MSTRKG-GET-SRKPKHQNEFAFRHNPKSKKTLKILAMPNEGLCRRCHAKVEWRKKYRKYKPLKNPASCNECRQKTVRAAYHTKCGPCAKAKRVCPGC 288
            MSTRKG G T +RKPKHQN FAFRHNPKS+KT KILA  N GLC  CH KVEWRK+YRKY+PL+ PA+CN+C +KT+ AAYH  C PCA+ +RVCP C
Sbjct:    1 MSTRKGAGATRTRKPKHQNTFAFRHNPKSQKTAKILASVNAGLCASCHDKVEWRKRYRKYRPLRQPATCNDCHKKTITAAYHKICAPCARERRVCPWC 98          
BLAST of mRNA_P-wetherbeei_contig10540.1.1 vs. uniprot
Match: A0A6V3DVU9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3DVU9_HETAK)

HSP 1 Score: 141 bits (355), Expect = 2.170e-40
Identity = 68/103 (66.02%), Postives = 79/103 (76.70%), Query Frame = 1
Query:    1 MSTRKGGETSRK--PKHQNEFAFRHNPKSKKTLKILAMPNEGLCRRCHAKVEWRKKYRKYKPLKNPASCNECRQKTVRAAYHTKCGPCAKAKRVCPGCGERPE 303
            MS+R+G   ++K  PKHQNEFAF+HNP SKKT KILAMPN GLCRRC  K+EWRKKYRKYKPL  PA C  C+QKTV +AYH+ C PCAK +R+C  C E  E
Sbjct:    1 MSSRRGKSAAKKGAPKHQNEFAFKHNPNSKKTRKILAMPNVGLCRRCSEKIEWRKKYRKYKPLTQPAVCRFCKQKTVTSAYHSACKPCAKQRRICAFCCESNE 103          
BLAST of mRNA_P-wetherbeei_contig10540.1.1 vs. uniprot
Match: A0A6H5JI96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI96_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.210e-39
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 MSTRKG-GET-SRKPKHQNEFAFRHNPKSKKTLKILAMPNEGLCRRCHAKVEWRKKYRKYKPLKNPASCNECRQKTVRAAYHTKCGPCAKAKRVCPGC 288
            MSTRKG G T +RKPKHQN FAFRHNPKS+KT KIL+  N GLC  CH KVEWRK+YRKY+PL+ PA+CN+C +KT+ AAYH  C PCA+ +RVCP C
Sbjct:    1 MSTRKGAGATRTRKPKHQNTFAFRHNPKSQKTAKILSSVNAGLCASCHDKVEWRKRYRKYRPLRQPATCNDCHKKTITAAYHKICTPCARERRVCPWC 98          
BLAST of mRNA_P-wetherbeei_contig10540.1.1 vs. uniprot
Match: A0A7S2BQ45_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQ45_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.160e-37
Identity = 62/96 (64.58%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 MSTRKGGETSRKPKHQNEFAFRHNPKSKKTLKILAMPNEGLCRRCHAKVEWRKKYRKYKPLKNPASCNECRQKTVRAAYHTKCGPCAKAKRVCPGC 288
            MS ++  +  RKP HQNEFAF HN  S+ T KILAMPNEGLCRRCH K+EWRKKYRKYKPLK P  CN C  K V+AAYH  C PCA  K +C  C
Sbjct:    1 MSMKQSKKKGRKPAHQNEFAFVHNANSRLTKKILAMPNEGLCRRCHDKIEWRKKYRKYKPLKQPRKCNFCHNKAVKAAYHVACKPCAAEKSICAWC 96          
BLAST of mRNA_P-wetherbeei_contig10540.1.1 vs. uniprot
Match: W7TBG8_9STRA (Uncharacterized protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBG8_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.380e-37
Identity = 63/92 (68.48%), Postives = 69/92 (75.00%), Query Frame = 1
Query:   19 GETSRKPKHQNEFAFRHNPKSKKTLKILAMPNEGLCRRCHAKVEWRKKYRKYKPLKNPASCNECRQKTVRAAYHTKCGPCAKAKRVCPGCGE 294
            G+  R P HQN FAFRHNPKSKKT +ILA P EGLC RCH KVEWRKKYRKYKPL  PA+C  C  K+VRAAYH  C PCA+ + VC GC E
Sbjct:   17 GQRRRGPAHQNTFAFRHNPKSKKTERILASPIEGLCHRCHEKVEWRKKYRKYKPLSAPATCTGCHTKSVRAAYHQICDPCAEKRAVCAGCAE 108          
BLAST of mRNA_P-wetherbeei_contig10540.1.1 vs. uniprot
Match: A0A6A3LRT3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LRT3_9STRA)

HSP 1 Score: 132 bits (333), Expect = 3.220e-37
Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = 1
Query:    1 MSTRKGGETSRKPKHQNEFAFRHNPKSKKTLKILAMPNEGLCRRCHAKVEWRKKYRKYKPLKNPASCNECRQKTVRAAYHTKCGPCAKAKRVCPGC 288
            MST++G    R PKHQN FAF+HNPKSKKT +IL+MP  GLC +C  ++EWRKKYRKYKPL  P SC  C QKTV +AYH+ C PCAK + +C  C
Sbjct:    1 MSTQRGNMKKRAPKHQNNFAFKHNPKSKKTERILSMPIHGLCEKCRNQIEWRKKYRKYKPLTQPGSCIHCHQKTVTSAYHSSCDPCAKERNICAKC 96          
BLAST of mRNA_P-wetherbeei_contig10540.1.1 vs. uniprot
Match: A0A1W0A5U4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5U4_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.090e-36
Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 1
Query:    1 MSTRKGGETSRKPKHQNEFAFRHNPKSKKTLKILAMPNEGLCRRCHAKVEWRKKYRKYKPLKNPASCNECRQKTVRAAYHTKCGPCAKAKRVCPGC 288
            MS+++G      PKHQN FAF+HNPKSKKT  IL++P  GLC  CH ++ WRKKYRKY+PL  P +C ECRQKTV AAYHT C PCAKAK VC  C
Sbjct:    1 MSSQRGNLKKGAPKHQNTFAFKHNPKSKKTEHILSLPIHGLCPHCHEQIVWRKKYRKYRPLTQPGNCTECRQKTVTAAYHTLCQPCAKAKGVCAKC 96          
BLAST of mRNA_P-wetherbeei_contig10540.1.1 vs. uniprot
Match: A0A067D9F3_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D9F3_SAPPC)

HSP 1 Score: 131 bits (330), Expect = 1.150e-36
Identity = 61/96 (63.54%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    1 MSTRKGGETSRKPKHQNEFAFRHNPKSKKTLKILAMPNEGLCRRCHAKVEWRKKYRKYKPLKNPASCNECRQKTVRAAYHTKCGPCAKAKRVCPGC 288
            MS+++G      PKHQN FAF+HNPKSKKT  IL +P  GLC  CH ++ WRKKYRKY+PL  P +C ECRQKTV AAYHT C PCAKAK VC  C
Sbjct:    1 MSSQRGNVKKGAPKHQNTFAFKHNPKSKKTEHILGLPIHGLCPHCHEQIVWRKKYRKYRPLTQPGNCTECRQKTVTAAYHTLCQPCAKAKGVCAKC 96          
BLAST of mRNA_P-wetherbeei_contig10540.1.1 vs. uniprot
Match: G4ZER0_PHYSP (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=G4ZER0_PHYSP)

HSP 1 Score: 130 bits (326), Expect = 3.810e-36
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    1 MSTRKGGETSRKPKHQNEFAFRHNPKSKKTLKILAMPNEGLCRRCHAKVEWRKKYRKYKPLKNPASCNECRQKTVRAAYHTKCGPCAKAKRVCPGC 288
            MST++G    R PKHQN FAF+HNPKSKKT +I++MP  GLC +C  ++EWRKKYRKYKPL  P SC  C QKTV +AYH  C PCAK + +C  C
Sbjct:    1 MSTQRGNVKKRAPKHQNAFAFKHNPKSKKTERIMSMPIHGLCEKCRKQIEWRKKYRKYKPLTQPGSCIYCHQKTVTSAYHASCDPCAKERDICAKC 96          
BLAST of mRNA_P-wetherbeei_contig10540.1.1 vs. uniprot
Match: A0A3R7MRP7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MRP7_9STRA)

HSP 1 Score: 128 bits (322), Expect = 3.030e-35
Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = 1
Query:    1 MSTRKGGETSRKPKHQNEFAFRHNPKSKKTLKILAMPNEGLCRRCHAKVEWRKKYRKYKPLKNPASCNECRQKTVRAAYHTKCGPCAKAKRVCPGC 288
            MS+++G    R PKHQN FAF+HNPKSKKT +IL+MP  GLC +C  ++EWRKKYRKYKPL  P SC  C QKTV +AYH+ C PCAK + VC  C
Sbjct:   24 MSSQRGNVKKRAPKHQNTFAFKHNPKSKKTERILSMPIHGLCDKCLKQIEWRKKYRKYKPLSQPGSCIYCHQKTVTSAYHSACNPCAKERDVCAKC 119          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10540.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT51_ECTSI2.100e-4169.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6V3DVU9_HETAK2.170e-4066.02Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5JI96_9PHAE1.210e-3968.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2BQ45_9STRA1.160e-3764.58Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7TBG8_9STRA1.380e-3768.48Uncharacterized protein n=6 Tax=Monodopsidaceae Ta... [more]
A0A6A3LRT3_9STRA3.220e-3761.46Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A1W0A5U4_9STRA1.090e-3663.54Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A067D9F3_SAPPC1.150e-3663.54Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
G4ZER0_PHYSP3.810e-3660.42Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
A0A3R7MRP7_9STRA3.030e-3561.46Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10540contigP-wetherbeei_contig10540:639..977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LT51
Preferred nameC9orf85
PFAMsDUF2039
Model size339
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.45e-42
EggNOG OGsKOG3241@1|root,KOG3241@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF2039
Ec32 orthologEc-08_004260.1
DescriptionUncharacterized conserved protein (DUF2039)
Cds size339
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185874.359245-CDS-P-wetherbeei_contig10540:638..9771683185874.359245-CDS-P-wetherbeei_contig10540:638..977Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10540 639..977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10540.1.1prot_P-wetherbeei_contig10540.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10540 639..977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10540.1.1

>prot_P-wetherbeei_contig10540.1.1 ID=prot_P-wetherbeei_contig10540.1.1|Name=mRNA_P-wetherbeei_contig10540.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MSTRKGGETSRKPKHQNEFAFRHNPKSKKTLKILAMPNEGLCRRCHAKVE
WRKKYRKYKPLKNPASCNECRQKTVRAAYHTKCGPCAKAKRVCPGCGERP
EAAPTGAAATEEE
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mRNA from alignment at P-wetherbeei_contig10540:639..977-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10540.1.1 ID=mRNA_P-wetherbeei_contig10540.1.1|Name=mRNA_P-wetherbeei_contig10540.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig10540:639..977- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACGCGGAAGGGAGGCGAGACGAGCCGTAAGCCCAAGCACCAGAA TGAGTTCGCCTTCCGGCACAATCCCAAGTCGAAAAAGACTCTGAAGATTT TGGCTATGCCCAACGAGGGGCTCTGCCGACGGTGCCACGCCAAAGTGGAA TGGCGGAAGAAGTATCGCAAGTACAAGCCGCTGAAGAACCCGGCCTCCTG CAACGAATGCCGCCAGAAGACCGTGCGAGCTGCCTACCACACAAAATGCG GACCGTGCGCCAAGGCCAAGCGCGTGTGCCCCGGCTGCGGCGAGCGACCG GAAGCGGCACCAACAGGAGCAGCAGCTACGGAGGAAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10540:639..977-

>mRNA_P-wetherbeei_contig10540.1.1 ID=mRNA_P-wetherbeei_contig10540.1.1|Name=mRNA_P-wetherbeei_contig10540.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig10540:639..977- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACGCGGAAGGGAGGCGAGACGAGCCGTAAGCCCAAGCACCAGAA
TGAGTTCGCCTTCCGGCACAATCCCAAGTCGAAAAAGACTCTGAAGATTT
TGGCTATGCCCAACGAGGGGCTCTGCCGACGGTGCCACGCCAAAGTGGAA
TGGCGGAAGAAGTATCGCAAGTACAAGCCGCTGAAGAACCCGGCCTCCTG
CAACGAATGCCGCCAGAAGACCGTGCGAGCTGCCTACCACACAAAATGCG
GACCGTGCGCCAAGGCCAAGCGCGTGTGCCCCGGCTGCGGCGAGCGACCG
GAAGCGGCACCAACAGGAGCAGCAGCTACGGAGGAAGAG
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