mRNA_P-wetherbeei_contig1054.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1054.3.1
Unique NamemRNA_P-wetherbeei_contig1054.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1054.3.1 vs. uniprot
Match: W7TYL2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYL2_9STRA)

HSP 1 Score: 162 bits (411), Expect = 7.940e-45
Identity = 89/158 (56.33%), Postives = 113/158 (71.52%), Query Frame = 1
Query:   31 PVALPLLVV-LLAVLATLGA--VVAASSSAGRAKVGELLRPVVSRLSDTGPGQELLYETGPLPDVGRVAGLFVPEDKWHKLAASLAIDIIGSSSYLLPVIGEAGDLGWAPLQALLIAGMYSKSSPYAAYVGFTEELLPFTDIIPTATLAWLKEFGPEI 495
            PV LPLL++ L+A L  L A  ++A SS AGR +V  L+ PV+ +L+ T  GQ+LLYETGP P   R+A  F P+ +W +L  SL +D IG+SSYLLPV+GE  DL WAPL A+ +  MYS++SPYA YVG  EELLPFTDIIPTATLAW +E G  +
Sbjct:  290 PVFLPLLLLGLVAGLTMLIASIILALSSRAGRGRVEALVDPVIRKLTHTATGQQLLYETGPRPSPLRIAKTFAPKGRWERLVTSLILDTIGASSYLLPVLGEFTDLAWAPLFAVALHAMYSETSPYAHYVGLVEELLPFTDIIPTATLAWFRENGAAL 447          
BLAST of mRNA_P-wetherbeei_contig1054.3.1 vs. uniprot
Match: A0A7S4HQ87_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HQ87_9STRA)

HSP 1 Score: 156 bits (394), Expect = 9.540e-43
Identity = 83/159 (52.20%), Postives = 105/159 (66.04%), Query Frame = 1
Query:   31 PVALPLLVVLLAVLATLGAVVAA---SSSAGRAKVGELLRPVVSRLSDTGPGQELLYETGPLPDVGRVAGLFVPEDKWHKLAASLAIDIIGSSSYLLPVIGEAGDLGWAPLQALLIAGMYSKSSPYAAYVGFTEELLPFTDIIPTATLAWLKEFGPEIY 498
            P  LPLLVVL+   A++GA+  +   S+  GRAK+   + PV S  + T  GQ  LYETGP P    +A   +P+    KL ASL ID+IGSSSYLLP++GEA DL WAP QA+L+A MY   SP   YV F EE+LPFTD+IP+AT  WL+EFGP  +
Sbjct:  245 PFFLPLLVVLITFAASVGAIFGSLYVSTRDGRAKIAPFVTPVYSTFASTPAGQSFLYETGPRPSPVTLARCVLPDSMTGKLIASLLIDLIGSSSYLLPLVGEAFDLSWAPTQAVLVAAMYDDVSPSLKYVAFAEEILPFTDLIPSATYGWLREFGPGFF 403          
BLAST of mRNA_P-wetherbeei_contig1054.3.1 vs. uniprot
Match: A0A7S4QJI5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QJI5_9STRA)

HSP 1 Score: 147 bits (372), Expect = 6.830e-40
Identity = 77/160 (48.12%), Postives = 104/160 (65.00%), Query Frame = 1
Query:   31 PVALPLLVVLLAVLATLGAVVAA---SSSAGRAKVGE-LLRPVVSRLSDTGPGQELLYETGPLPDVGRVAGLFVPEDKWHKLAASLAIDIIGSSSYLLPVIGEAGDLGWAPLQALLIAGMYSKSSPYAAYVGFTEELLPFTDIIPTATLAWLKEFGPEIY 498
            P  LPLL  L  + + L  VVA    S+  GR ++G+ L+ P+++ +  T  GQ L+Y+ GP P    +A   +P D W KL  SL ID +GSSSYL+P+ GEA DL WAP+Q +LIA MY   SP   YV F EE+LPFTD+IP+ATL W +EFGP+++
Sbjct:  203 PFFLPLLAALTTIASALSVVVAILYFSTPQGRERLGQTLIYPLLNTVLHTPAGQRLVYDIGPRPTPKSLAQSVLPTDIWSKLVVSLVIDFVGSSSYLIPIAGEALDLSWAPIQTILIAAMYDDVSPNLKYVSFVEEILPFTDVIPSATLGWTREFGPQLW 362          
BLAST of mRNA_P-wetherbeei_contig1054.3.1 vs. uniprot
Match: A0A836CGD0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGD0_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.100e-39
Identity = 67/127 (52.76%), Postives = 87/127 (68.50%), Query Frame = 1
Query:  115 RAKVGELLRPVVSRLSDTGPGQELLYETGPLPDVGRVAGLFVPEDKWHKLAASLAIDIIGSSSYLLPVIGEAGDLGWAPLQALLIAGMYSKSSPYAAYVGFTEELLPFTDIIPTATLAWLKEFGPEI 495
            RA +   + P++  +     GQ ++Y TGP P   +V     P+ KW KLAAS+A+D IG +SY LPV+GE GD+ WAPL A+LIA MY    PY AY+GF EE+LPFTDIIPTA+LAW +EF PE+
Sbjct:  229 RALLMPKIEPLIQEMQRDVLGQRIMYNTGPRPTPMQVLRYVAPKSKWPKLAASVAVDFIGCTSYALPVLGEVGDVAWAPLSAVLIAAMYDDKQPYMAYMGFAEEILPFTDIIPTASLAWAREFAPEL 355          
BLAST of mRNA_P-wetherbeei_contig1054.3.1 vs. uniprot
Match: A0A7S1VKK5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VKK5_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.340e-39
Identity = 79/159 (49.69%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   31 PVALPLLVVLLAV-LATLGAV--VAASSSAGRAKVGE-LLRPVVSRLSDTGPGQELLYETGPLPDVGRVAGLFVPEDKWHKLAASLAIDIIGSSSYLLPVIGEAGDLGWAPLQALLIAGMYSKSSPYAAYVGFTEELLPFTDIIPTATLAWLKEFGPEI 495
            P  LPLLV  LA+ LA  G +  + AS+S GR ++   +L P ++ +  T  GQ L+YETGP P    +A L +P D W +L  SL ID IGSSSYLLPV+GEA D+GWAP+Q +LI  MY +++P   YV F EE+LPFTD++P+AT+ W+ +FGP +
Sbjct:  216 PFFLPLLVATLAIFLAGTGVLGLLYASTSKGREQLSSYILTPTLNTMLSTPSGQALVYETGPRPTPVSIAKLVLPTDMWGRLCISLIIDGIGSSSYLLPVVGEAFDIGWAPIQTILIMAMYDETTPNLKYVSFIEEILPFTDVVPSATIGWVAQFGPGL 374          
BLAST of mRNA_P-wetherbeei_contig1054.3.1 vs. uniprot
Match: A0A7S1ZMQ1_TRICV (Hypothetical protein (Fragment) n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZMQ1_TRICV)

HSP 1 Score: 146 bits (368), Expect = 3.110e-39
Identity = 80/155 (51.61%), Postives = 100/155 (64.52%), Query Frame = 1
Query:   31 PVALPLLVVLLAVLATLGAVVAA---SSSAGRAKVGELLRPVVSRLSDTGPGQELLYETGPLPDVGRVAGLFVPEDKWHKLAASLAIDIIGSSSYLLPVIGEAGDLGWAPLQALLIAGMYSKSSPYAAYVGFTEELLPFTDIIPTATLAWLKEFG 486
            P  LPLLVV  A+ AT+ A       S+  GRA+VG L+ P    L+ T  GQ  +YETG  P    +A   VP D   KL  SL ID++GSSSYLLPV+GEA DL WAP Q++LIA MY + SP   YV F EE+LPFTD+IP+AT  WL+++G
Sbjct:  211 PFFLPLLVVFGALAATIAAAAGGLYFSTRDGRARVGPLIGPAYEALAATSTGQRFVYETGDRPSPVALAEAVVPRDMAGKLILSLLIDLVGSSSYLLPVVGEAFDLAWAPTQSVLIAAMYDEVSPNLKYVSFAEEILPFTDVIPSATYGWLRQYG 365          
BLAST of mRNA_P-wetherbeei_contig1054.3.1 vs. uniprot
Match: A0A7S4QI85_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QI85_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.900e-39
Identity = 77/160 (48.12%), Postives = 104/160 (65.00%), Query Frame = 1
Query:   31 PVALPLLVVLLAVLATLGAVVAA---SSSAGRAKVGE-LLRPVVSRLSDTGPGQELLYETGPLPDVGRVAGLFVPEDKWHKLAASLAIDIIGSSSYLLPVIGEAGDLGWAPLQALLIAGMYSKSSPYAAYVGFTEELLPFTDIIPTATLAWLKEFGPEIY 498
            P  LPLL  L  + + L  VVA    S+  GR ++G+ L+ P+++ +  T  GQ L+Y+ GP P    +A   +P D W KL  SL ID +GSSSYL+P+ GEA DL WAP+Q +LIA MY   SP   YV F EE+LPFTD+IP+ATL W +EFGP+++
Sbjct:  304 PFFLPLLAALTTIASALSVVVAILYFSTPQGRERLGQTLIYPLLNTVLHTPAGQRLVYDIGPRPTPKSLAQSVLPTDIWSKLVVSLVIDFVGSSSYLIPIAGEALDLSWAPIQTILIAAMYDDVSPNLKYVSFVEEILPFTDVIPSATLGWTREFGPQLW 463          
BLAST of mRNA_P-wetherbeei_contig1054.3.1 vs. uniprot
Match: B7G8M1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8M1_PHATC)

HSP 1 Score: 146 bits (368), Expect = 9.260e-39
Identity = 80/159 (50.31%), Postives = 103/159 (64.78%), Query Frame = 1
Query:   19 AIFAPVALPLLVVLLAVLATLGAVVA---ASSSAGRAKVGELLRPVVSRLSDTGPGQELLYETGPLPDVGRVAGLFVPEDKWHKLAASLAIDIIGSSSYLLPVIGEAGDLGWAPLQALLIAGMYSKSSPYAAYVGFTEELLPFTDIIPTATLAWLKEFG 486
            A+  P+ LPLLV   AVL T+  V+    AS++AGR +V  +  PVV  L  +  GQ L+Y+TGP P    VA   +P   W KL  SL ID +GS+SYLLP++GE  D+ WAPLQ +LI  MY  +SP   Y+ F EE+LPFTDI+P+AT  WLKEFG
Sbjct:  246 AVTLPMLLPLLVAGAAVLFTVATVLLILYASTNAGREQVSGICMPVVHTLLASRSGQRLVYQTGPRPTPVGVAKAILPVSLWQKLFVSLWIDFMGSASYLLPIVGEGLDIAWAPLQTILIMAMYDTTSPNLKYISFLEEILPFTDIVPSATAGWLKEFG 404          
BLAST of mRNA_P-wetherbeei_contig1054.3.1 vs. uniprot
Match: D8LTZ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTZ9_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.650e-37
Identity = 80/159 (50.31%), Postives = 103/159 (64.78%), Query Frame = 1
Query:   40 LPLLVVLLAVLATLGAVVAASSSA-------GRAKVGELLRPVVSRLSDTGPGQELLYETGPLPDVGRVAGLFVPEDKWHKLAASLAIDIIGSSSYLLPVIGEAGDLGWAPLQALLIAGMYSKSSPYAAYVGFTEELLPFTDIIPTATLAWLKEFGPEI 495
            LPLLV +L V+A +G V A  ++A       GRA V   +RPV  R+    P  E+LY  GP P   R+A   VP   W KLA S+A+D IG +SY++P++GE+ DL WAP+  LLI  MY  SSP+A   G  EELLPFTDIIPTATLAW+KE+ P++
Sbjct:  233 LPLLVPMLIVVAAVGGVGALLTAAVWLFSRGGRAWVQRAVRPVYDRVGRDNP--EVLYPVGPGPSPARIAQCLVPTGMWSKLAMSIAVDTIGCTSYIVPILGESADLLWAPVSYLLIDAMYHGSSPWAGVFGAMEELLPFTDIIPTATLAWMKEYLPQM 389          
BLAST of mRNA_P-wetherbeei_contig1054.3.1 vs. uniprot
Match: A0A7S3QC22_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QC22_9STRA)

HSP 1 Score: 140 bits (353), Expect = 8.170e-37
Identity = 74/161 (45.96%), Postives = 103/161 (63.98%), Query Frame = 1
Query:   31 PVALPLLVVLLAVLATLGAVVAAS-----SSAGRAKVGELLRPVVSRLSDTGPGQELLYETGPLPDVGRVAGLFVPEDKWHKLAASLAIDIIGSSSYLLPVIGEAGDLGWAPLQALLIAGMYSKSSPYAAYVGFTEELLPFTDIIPTATLAWLKEFGPEIY 498
            P  LP+L++LLAV AT  A+V  S     SS GR      L+P++S    T  GQ+LLYETGP P    ++   +P+D   +L  SL ID IGSSSYLLP +GE+ DLGWAP+Q +L+  MY K  P   Y+ F EE++PFTD++P+ TL W++ + P ++
Sbjct:  255 PFFLPVLIILLAVGAT--ALVGCSGLYLSSSMGRETAARFLQPIMSTFIATSSGQKLLYETGPRPSPVALSETMLPDDMIGQLIVSLLIDFIGSSSYLLPGVGESFDLGWAPMQTVLLMAMYDKQMPSLKYISFIEEIMPFTDVLPSGTLGWVRRWSPLVF 413          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1054.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TYL2_9STRA7.940e-4556.33Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4HQ87_9STRA9.540e-4352.20Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4QJI5_9STRA6.830e-4048.13Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A836CGD0_9STRA1.100e-3952.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1VKK5_9STRA2.340e-3949.69Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1ZMQ1_TRICV3.110e-3951.61Hypothetical protein (Fragment) n=2 Tax=Trieres ch... [more]
A0A7S4QI85_9STRA3.900e-3948.13Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
B7G8M1_PHATC9.260e-3950.31Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
D8LTZ9_ECTSI1.650e-3750.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3QC22_9STRA8.170e-3745.96Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1054contigP-wetherbeei_contig1054:6568..7579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatr48859
Model size498
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons3
Evalue1.52e-39
EggNOG OGs2DMHC@1|root,2S650@2759|Eukaryota,2XBWW@2836|Bacillariophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_003700.1
Cds size498
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185874.2961948-CDS-P-wetherbeei_contig1054:6567..66601683185874.2961948-CDS-P-wetherbeei_contig1054:6567..6660Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1054 6568..6660 -
1683185874.3081803-CDS-P-wetherbeei_contig1054:6839..69291683185874.3081803-CDS-P-wetherbeei_contig1054:6839..6929Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1054 6840..6929 -
1683185874.319167-CDS-P-wetherbeei_contig1054:7264..75791683185874.319167-CDS-P-wetherbeei_contig1054:7264..7579Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1054 7265..7579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1054.3.1prot_P-wetherbeei_contig1054.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1054 6568..7579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1054.3.1

>prot_P-wetherbeei_contig1054.3.1 ID=prot_P-wetherbeei_contig1054.3.1|Name=mRNA_P-wetherbeei_contig1054.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
LILNAGAIFAPVALPLLVVLLAVLATLGAVVAASSSAGRAKVGELLRPVV
SRLSDTGPGQELLYETGPLPDVGRVAGLFVPEDKWHKLAASLAIDIIGSS
SYLLPVIGEAGDLGWAPLQALLIAGMYSKSSPYAAYVGFTEELLPFTDII
PTATLAWLKEFGPEIY
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mRNA from alignment at P-wetherbeei_contig1054:6568..7579-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1054.3.1 ID=mRNA_P-wetherbeei_contig1054.3.1|Name=mRNA_P-wetherbeei_contig1054.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1012bp|location=Sequence derived from alignment at P-wetherbeei_contig1054:6568..7579- (Phaeothamnion wetherbeei SAG_119_79)
CTTATTTTAAACGCAGGCGCCATCTTTGCCCCTGTGGCGTTGCCGCTCCT GGTGGTTCTCCTGGCAGTGCTCGCGACCCTCGGGGCCGTCGTCGCTGCCA GCAGCAGCGCCGGACGCGCCAAGGTCGGTGAGTTGCTGCGGCCCGTCGTC TCGCGTTTGTCCGACACTGGTCCCGGCCAGGAGCTGCTGTACGAGACGGG TCCGCTGCCCGACGTTGGGCGCGTGGCGGGGCTGTTCGTGCCGGAGGACA AGTGGCACAAGCTGGCGGCGTCGCTGGCGATCGACATTATCGGGTCTTCT TCGTACCTCCTACCGGTGAGTGCAATGGTAGCAGTAACCGAGCGACGACG ACGGCAAGGCGACGGCGGCGACGAGACGGGAGCGGTGCCAACTTTGCTGC TTCACTGGCGGTAGTGGCAAGGACGGCAGCAGAGCTGAGTGGTGGCGGTG GCAGGTGCGGGGGTGGCGGCGAAGTGAGGTGTTTATTGTGCAGTCAGAGG TGACGCCCAAGGGGGCGGACGCCGGAGGAAAGCAGGCATGGATTCGATTC GCCCGTTCTGGCTCTACTCGTTCCCCTTCTTCCCCCGTTTTCCTCTCTCG CCCCTCTCGGGTGATGGCTGACTTCACCCGCCTTTGCCGCCTGAGAGCAG GTGATTGGCGAGGCGGGCGACCTCGGGTGGGCACCGCTGCAGGCGCTCCT CATCGCCGGCATGTACTCCAAGTCGAGCCCCTACGCCGCGGTGAGAAGAG AGAGAAGGAAGCGTTCTAATCTGTTAGGTCCAGCCGCACAGGGCTCAACG CACTTCAAATTCCGGTTGTGCTTTCGCAGCCATCATTTCCTGGAAATATA TATGACGTCTTGCGTCGTTTCCTTCCGTTGTCTTTGTTTCCCTTATTCCC TTCTTTTTCTCTTTGACAGTACGTGGGGTTCACAGAGGAGCTGCTTCCCT TCACCGATATCATCCCCACCGCTACGCTGGCCTGGCTGAAGGAGTTCGGG CCGGAAATCTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1054:6568..7579-

>mRNA_P-wetherbeei_contig1054.3.1 ID=mRNA_P-wetherbeei_contig1054.3.1|Name=mRNA_P-wetherbeei_contig1054.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig1054:6568..7579- (Phaeothamnion wetherbeei SAG_119_79)
CTTATTTTAAACGCAGGCGCCATCTTTGCCCCTGTGGCGTTGCCGCTCCT
GGTGGTTCTCCTGGCAGTGCTCGCGACCCTCGGGGCCGTCGTCGCTGCCA
GCAGCAGCGCCGGACGCGCCAAGGTCGGTGAGTTGCTGCGGCCCGTCGTC
TCGCGTTTGTCCGACACTGGTCCCGGCCAGGAGCTGCTGTACGAGACGGG
TCCGCTGCCCGACGTTGGGCGCGTGGCGGGGCTGTTCGTGCCGGAGGACA
AGTGGCACAAGCTGGCGGCGTCGCTGGCGATCGACATTATCGGGTCTTCT
TCGTACCTCCTACCGGTGATTGGCGAGGCGGGCGACCTCGGGTGGGCACC
GCTGCAGGCGCTCCTCATCGCCGGCATGTACTCCAAGTCGAGCCCCTACG
CCGCGTACGTGGGGTTCACAGAGGAGCTGCTTCCCTTCACCGATATCATC
CCCACCGCTACGCTGGCCTGGCTGAAGGAGTTCGGGCCGGAAATCTAC
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