mRNA_P-wetherbeei_contig1054.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1054.1.2
Unique NamemRNA_P-wetherbeei_contig1054.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1054.1.2 vs. uniprot
Match: D7G5E6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5E6_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 4.940e-12
Identity = 42/134 (31.34%), Postives = 65/134 (48.51%), Query Frame = 3 
Query:  411 ELDAIKQIQEKAEKLQKAFDAMPDYYEKRAGVWDKVGKKESXXXXXXXXXXXXXXXXXXXXSSQTHSESTDEKVTDAAGVPDAWLQLASIDVKCYVGLRELAGATAEALLVTADMVDKNGEKIRRPKGNGSDGG 812
            +LD  K I E    +  +   MP Y+E RA  WDK+G K+S                            T+EK ++++  PD+   L ++DVK +V L        ++L++ ADM++KN EK+ RPKG  + GG
Sbjct:  106 QLDVAKGIDELTTPVASSLGEMPGYFESRASAWDKIGNKKSKESKTSSSASKDTGGKDGDSXXXXXXXXTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKGTNTQGG 239
[Close]
BLAST of mRNA_P-wetherbeei_contig1054.1.2 vs. uniprot
Match: H6WB99_VAULI (BED-type domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB99_VAULI)

HSP 1 Score: 72.0 bits (175), Expect = 3.230e-10
Identity = 44/139 (31.65%), Postives = 73/139 (52.52%), Query Frame = 3 
Query:  417 DAIKQIQEKAEKLQKAFDAMPDYYEKRAGVWDK-VGKKESXXXXXXXXXXXXXXXXXXXXSSQTHSESTDEKVTDAAGVPDAWLQLASIDVKCYVGLRELAGATAEALLVTADMVDKNGEKIRRPKGNGSDGGSAAFMF 830
            +  K I E  EKLQ AF+ +P+Y+EKR+ VW+K +GK E+                       T ++STDE  +    +PD+   + ++D+KCYV L      + ++L  +A++V+ N  K+  PKG  +D  +A  M+
Sbjct:  188 EVTKNISESIEKLQAAFNTLPEYHEKRSAVWEKLIGKSETVTKKSTGNE-----------DKSTVTQSTDESNSTGKQLPDSLRTIVALDLKCYVNLHSHLQLSRDSLFFSANLVELNIGKLVAPKGE-ADRRAANLMY 314
[Close]
BLAST of mRNA_P-wetherbeei_contig1054.1.2 vs. uniprot
Match: A0A0L0FEA0_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FEA0_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 6.730e-8
Identity = 40/140 (28.57%), Postives = 65/140 (46.43%), Query Frame = 3 
Query:  414 LDAIKQIQEKAEKLQKAFDAMPDYYEKRAGVWDKVGKKESXXXXXXXXXXXXXXXXXXXXSSQTHSESTDEKVTDAAGV-PDAWLQLASIDVKCYVGLRELAGATAEALLVTADMVDKNGEKIRRPKGNGSDGGSAAFMF 830
            ++ +K I+E  + L    D +P+Y+ KR GVW+KV  K                       +   S   +E  +    + PD +  L +IDVK YV L  L     +A +++A+ + +N +K+  PKG+G   G A  MF
Sbjct:    1 MEVLKAIKEITDNLNGKIDDLPEYFNKRVGVWEKVTPKTDRTIKESKTTTDEDKDGTKEHKNV--STKLEESTSSTPFINPDCYQALLAIDVKFYVQLHRLLQQAYDAAIISANTIARNHDKLTNPKGSG---GGAHHMF 135
[Close]
BLAST of mRNA_P-wetherbeei_contig1054.1.2 vs. uniprot
Match: A0A8K1CBJ1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBJ1_PYTOL)

HSP 1 Score: 63.5 bits (153), Expect = 1.000e-7
Identity = 39/127 (30.71%), Postives = 60/127 (47.24%), Query Frame = 3 
Query:  411 ELDAIKQIQEKAEKLQKAFDAMPDYYEKRAGVWDKVGKKESXXXXXXXXXXXXXXXXXXXXSSQTHSESTDEKVTDAAGVPDAWLQLASIDVKCYVGLRELAGATAEALLVTADMVDKNGEKIRRPK 791
            +L  +K+I++  +KLQKA+D++PDY+ +RA   +K+  K S                         S    E  T AA V D   Q+ +IDVK +  L        +A  +  D V+KN +KI RP+
Sbjct:  107 QLIVLKEIKDATDKLQKAWDSLPDYHSQRATAIEKLNDKRSKEKTVTTTVTESTGGKEGDEKKSVVSSVDKESSTSAAPVDDWIAQVVAIDVKWFYNLARTLEIVRDAYAIVYDRVEKNKDKILRPR 233
[Close]
BLAST of mRNA_P-wetherbeei_contig1054.1.2 vs. uniprot
Match: A0A2D4BJC1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJC1_PYTIN)

HSP 1 Score: 57.4 bits (137), Expect = 1.190e-5
Identity = 37/128 (28.91%), Postives = 62/128 (48.44%), Query Frame = 3 
Query:  411 ELDAIKQIQEKAEKLQKAFDAMPDYYEKRAGVWDKVGKKESXXXXXXXXXXXXXXXXXXXXSSQTHSESTDEKVTDAAGVPDAWLQLASIDVKCYVGLRELAGATAEALLVTADMVDKNGEKIRRPKG 794
            +L  +K+++E ++KLQKA+DA+PDY+ +RA V +K+ +  S              X          +    E  T    V D    + +IDVK Y  L  +     +A  +  D ++KN +KI +P+G
Sbjct:  108 QLVVMKELKETSDKLQKAWDALPDYHSQRATVLEKLNEXLSKETSTTNTVTATTGXKEGDEKKTVVATVGKETATAQPVVEDWIANVVAIDVKWYFHLARVLELVRDAYAIAFDRIEKNKDKILKPRG 235
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1054.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G5E6_ECTSI4.940e-1231.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
H6WB99_VAULI3.230e-1031.65BED-type domain-containing protein n=1 Tax=Vaucher... [more]
A0A0L0FEA0_9EUKA6.730e-828.57Uncharacterized protein (Fragment) n=1 Tax=Sphaero... [more]
A0A8K1CBJ1_PYTOL1.000e-730.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BJC1_PYTIN1.190e-528.91Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1054contigP-wetherbeei_contig1054:3457..5565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G5E6
Preferred namePSME3
PFAMsPA28_alpha,PA28_beta
Model size1403
Max annot lvl2759|Eukaryota
KEGG rclassRC00062,RC00189,RC00676,RC01052
KEGG koko:K00276,ko:K06698
KEGG ReactionR02382,R02529,R02613,R03139,R04027,R04300,R06154,R06740
KEGG Pathwayko00260,ko00350,ko00360,ko00410,ko00950,ko00960,ko01100,ko01110,ko03050,ko04612,ko05160,map00260,map00350,map00360,map00410,map00950,map00960,map01100,map01110,map03050,map04612,map05160
Hectar predicted targeting categorysignal peptide
GOsGO:0000502,GO:0002039,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010564,GO:0010604,GO:0010646,GO:0010648,GO:0010941,GO:0010950,GO:0010952,GO:0016504,GO:0016579,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0030162,GO:0030234,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0036211,GO:0042176,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051726,GO:0052547,GO:0052548,GO:0060255,GO:0060548,GO:0061133,GO:0061134,GO:0061135,GO:0061136,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0097371,GO:0098772,GO:1901564,GO:1901987,GO:1901990,GO:1902494,GO:1902806,GO:1903050,GO:1903362,GO:1905368,GO:1905369,GO:2000045,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Exons3
Evalue2.15e-14
EggNOG OGsKOG4470@1|root,KOG4470@2759|Eukaryota
Ec32 ortholog descriptionProteasome activator pa28, C-terminal domain
Ec32 orthologEc-06_010760.1
EC1.4.3.21
Descriptionendopeptidase activator activity
Cds size579
COG categoryS
BRITEko00000,ko00001,ko01000,ko03051,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185874.2260933-UTR-P-wetherbeei_contig1054:3456..37101683185874.2260933-UTR-P-wetherbeei_contig1054:3456..3710Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1054 3457..3710 +
1683185874.2604663-UTR-P-wetherbeei_contig1054:4995..55651683185874.2604663-UTR-P-wetherbeei_contig1054:4995..5565Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1054 4996..5565 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185874.2351804-CDS-P-wetherbeei_contig1054:3710..39711683185874.2351804-CDS-P-wetherbeei_contig1054:3710..3971Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1054 3711..3971 +
1683185874.24267-CDS-P-wetherbeei_contig1054:4393..45621683185874.24267-CDS-P-wetherbeei_contig1054:4393..4562Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1054 4394..4562 +
1683185874.250079-CDS-P-wetherbeei_contig1054:4846..49951683185874.250079-CDS-P-wetherbeei_contig1054:4846..4995Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1054 4847..4995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1054.1.2prot_P-wetherbeei_contig1054.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1054 3711..4995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1054.1.2

>prot_P-wetherbeei_contig1054.1.2 ID=prot_P-wetherbeei_contig1054.1.2|Name=mRNA_P-wetherbeei_contig1054.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=193bp
MAWNILQIGHAPSCLLSTSVLALTLPAGPLRSSLAPFRTRPNQTNVMDEC
ISELDAIKQIQEKAEKLQKAFDAMPDYYEKRAGVWDKVGKKESKESKRSD
SSSSTKGGKDGDQSSQTHSESTDEKVTDAAGVPDAWLQLASIDVKCYVGL
RELAGATAEALLVTADMVDKNGEKIRRPKGNGSDGGSAAFMF*
back to top

mRNA from alignment at P-wetherbeei_contig1054:3457..5565+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1054.1.2 ID=mRNA_P-wetherbeei_contig1054.1.2|Name=mRNA_P-wetherbeei_contig1054.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2109bp|location=Sequence derived from alignment at P-wetherbeei_contig1054:3457..5565+ (Phaeothamnion wetherbeei SAG_119_79)
TCTGTCCTCCCTATCGTGCCTGGCGGCAAATCGGTTGGTTGCTGCTCACC
GCAGGTGGAAGACGGCGGAAATTTCGGCGTGCACATTCGTAAGTTTGTTA
GCAGCTGTGGCCCGATAGTTTCCGTGTTCTTTTCTGTCATCTTCCGGTGT
CTCTTTTCCCGGGTGCTTTTTTCCTACCGCCCACGTTTTTGCTACCCTTT
CCTGGCCTTCTTCTTGCGCTCTCCTTCCGGGGTAGAAACGCTGTTCAGCG
TTGAATGGCGTGGAACATACTTCAGATCGGCCATGCGCCTTCATGCCTCT
TGTCGACTTCCGTCTTGGCACTGACACTACCCGCCGGCCCGTTACGTTCC
TCTCTTGCTCCCTTTCGTACCCGACCGAATCAAACCAATGTCATGGATGA
ATGCATCTCAGAGCTGGACGCGATAAAGCAGATTCAGGAGAAGGCGGAGA
AGCTGCAGAAGGCGTTTGACGCCATGCCCGACTACTACGAGAAGCGGGCC
GGCGTGTGGGACAAGGTATGTTGTCGATGATAGGCTGTTGTGTTCGGGCA
ATCGGCTTGACAGCGGGCGGGTGGTTCGGCCGATTAGTTGGCGTTTCTTT
TCGGCGCGGTTTGGGGTTTTGGTGCCGCCCGCGGTCTTCCGTTTCTTGCG
AGGCCCGCGGGATCTGAGGTTTGGGCTTGCTCTAGGGGAGTTCTTTAGAT
AACGTATTTTCGAGGTCATTTGAGGTCAGGAGGCTACAGGGTTGGAGTGT
TCGTGTTTGGGACTTTCTCTTGCCGCAATAGCTGCCCCTTCTTCCCGTCG
GTCCGTGCTACTGCTGTCGCTGGGCCACAGTTTTCGACACCTTTTGCCGC
CCCGCTGTTCTTTCTTCCCGTTCTTTCCCCTTCCTCACGTATTCCTGTCG
TCCGCCCGTCCGATATCCGCCCCATGTCAATTTCCAGGTAGGCAAGAAGG
AGTCGAAGGAGTCGAAGCGCTCCGACTCGTCATCCTCTACCAAGGGCGGC
AAGGACGGCGACCAGTCCTCCCAGACACACTCCGAGTCGACTGATGAGAA
GGTCACCGACGCGGCGGGGGTGCCTGACGCCTGGCTGCAGCTCGCGTCCA
TCGACGGTGATATTTTTGACAGCAGCTGGTGGCTAAAGGGGGCCACCAGT
TGTGTGTGGCATGGGCGTCCGAGTGCGCCGTCGGCGTGGCGGACCTGTTT
TTCCTGGTGGATCTGTGTCCAGTGCTGAGAGGCGCGTTTGCAGGATTCGA
TTTGGCTATTGGTGAAATCTCGTTCCCCTTGCAAAGTAGGATCTTGTCGC
GTAGCGTCAAAATAAGTGGTACACTCTAACTGCTTTTTGGTACCACTCAT
TTATCTCTCCTTTTGTCTCAACCGTTGCAAAAACATGCAGTTAAGTGCTA
CGTGGGGCTCCGGGAGCTGGCGGGGGCGACGGCGGAGGCGCTGCTTGTGA
CGGCTGACATGGTGGACAAGAACGGGGAGAAGATCCGCCGCCCCAAGGGC
AACGGGAGCGATGGGGGCAGCGCCGCCTTCATGTTCTGAAAGGAACCGGA
TAACGCGAGTTCTAAAATGCGAGCGTTGCGGCGACGGGCGGCTACGGTCG
TCGTTGTCCGTAGCGGCGACAGTGGCTGCTGCGGCAACGGCAGCGACCCC
GACATCAGCGACCGCGACGTCAGCGACCGCGGCGACCACGGCGACGGCGA
CCGCGGCGGCAGCAACGGCGGCGAGTGCGCCGCCGCGGAGAGATTTTGTT
CGGCGACTCGAGGCTTCCGGTCGCGCTATCATGGCGGCTCCCTCGGCAGC
ATTCCGGCACTGCCGGGGCTGCTGCCATGGCTGGGCGGGTGGTTATCGCC
GTGCGAGCCTTACTCGCGGGCTTGTGCCGTTGTTAGCGCGGCATATGCAT
CTGGGGAAATGGGCTCTCCTTGGAGCTCTCCTGCTGTGCAGGCGCCAAGC
TATCGACGGCCGGTGGCCGGGAGATATCGTCGCAAGGCGCCGGGAAAGCT
ACGGGGGAGCCGGCAGGCCGGTGGCCGCACGCGGCGCTGTTCTGCATCCA
AGACGCCCGTCGCTGCAATGATAATCGGAATCGAAAAAAAATAAACAGAA
ACATACGAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1054:3457..5565+

>mRNA_P-wetherbeei_contig1054.1.2 ID=mRNA_P-wetherbeei_contig1054.1.2|Name=mRNA_P-wetherbeei_contig1054.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig1054:3457..5565+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTGGAACATACTTCAGATCGGCCATGCGCCTTCATGCCTCTTGTC
GACTTCCGTCTTGGCACTGACACTACCCGCCGGCCCGTTACGTTCCTCTC
TTGCTCCCTTTCGTACCCGACCGAATCAAACCAATGTCATGGATGAATGC
ATCTCAGAGCTGGACGCGATAAAGCAGATTCAGGAGAAGGCGGAGAAGCT
GCAGAAGGCGTTTGACGCCATGCCCGACTACTACGAGAAGCGGGCCGGCG
TGTGGGACAAGGTAGGCAAGAAGGAGTCGAAGGAGTCGAAGCGCTCCGAC
TCGTCATCCTCTACCAAGGGCGGCAAGGACGGCGACCAGTCCTCCCAGAC
ACACTCCGAGTCGACTGATGAGAAGGTCACCGACGCGGCGGGGGTGCCTG
ACGCCTGGCTGCAGCTCGCGTCCATCGACGTTAAGTGCTACGTGGGGCTC
CGGGAGCTGGCGGGGGCGACGGCGGAGGCGCTGCTTGTGACGGCTGACAT
GGTGGACAAGAACGGGGAGAAGATCCGCCGCCCCAAGGGCAACGGGAGCG
ATGGGGGCAGCGCCGCCTTCATGTTCTGA
back to top