mRNA_P-wetherbeei_contig1053.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1053.8.1
Unique NamemRNA_P-wetherbeei_contig1053.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1053.8.1 vs. uniprot
Match: A0A3C0TUN6_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TUN6_9PROT)

HSP 1 Score: 276 bits (706), Expect = 1.740e-87
Identity = 165/308 (53.57%), Postives = 208/308 (67.53%), Query Frame = 1 
Query:    1 PAAARSLVTNDAAGSVDYLNALAELTSSANRISAGSLHEDGPLLRIAPDGALAA--SGLLTEEDRELAQTARRLFVLYQSIGGRAGSRALLVQRTKAGLFVAREGATGAVSASLRAAMGGAVAALARSDASLPDAARAWLPQLSAAIANPGGTPPQNPIARIARNQPTLITLTGPEIARAGADAILAGPRGSRITLMRSAGGQLQARIILSQDTPDGFSKLYLYRGGDALNAVADFDISVGTGRSGASQTAAADDHGATARTATALLPAGASRASLAGQIGAADDVDMFRLNVTAPGSLVITSRGSSD 918
            PA+A++ ++ DA  + DYL+ LA+L +S NR+   +L  DGPLLRI+PD    A     L+E DREL   ARRLF LY  IGG+   R LL+QRT+ GLFVAREG TGA+S SL + +G A+ +LA SDASLP+ A AW+  L+ A+A PG +PP  PIARI R +PT ITL+ PEIA AGAD ILAGP GS + ++   GGQ++A  IL   TP GFSKLYLYR G+AL+ +ADFDI+VG+  SG   TAA   H A A   T LL  G + AS  GQI AA  VD+F + V + G L + SRGSSD
Sbjct:   22 PASAQTALSTDAVSAPDYLDGLAQLFASCNRVEPDTLLGDGPLLRISPDDPPEAIDDPALSEADRELLAAARRLFALYHDIGGKLDGRPLLLQRTRNGLFVAREGMTGALSGSLGSGLGSALLSLAGSDASLPEPAMAWVRNLAGALAEPGKSPPPFPIARIPRGEPTTITLSAPEIAEAGADPILAGPPGSMVNILSHTGGQIKASAILPASTPSGFSKLYLYRAGNALSPIADFDIAVGSAISGQGSTAAKAPHSAAA---TPLLRPGETEASREGQIAAAGAVDIFSIRVASMGMLTVNSRGSSD 326
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1053.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3C0TUN6_9PROT1.740e-8753.57Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1053contigP-wetherbeei_contig1053:7110..8027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size918
Hectar predicted targeting categoryother localisation
Exons1
Cds size918
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185874.0595055-CDS-P-wetherbeei_contig1053:7109..80271683185874.0595055-CDS-P-wetherbeei_contig1053:7109..8027Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1053 7110..8027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1053.8.1prot_P-wetherbeei_contig1053.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1053 7110..8027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1053.8.1

>prot_P-wetherbeei_contig1053.8.1 ID=prot_P-wetherbeei_contig1053.8.1|Name=mRNA_P-wetherbeei_contig1053.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=306bp
PAAARSLVTNDAAGSVDYLNALAELTSSANRISAGSLHEDGPLLRIAPDG
ALAASGLLTEEDRELAQTARRLFVLYQSIGGRAGSRALLVQRTKAGLFVA
REGATGAVSASLRAAMGGAVAALARSDASLPDAARAWLPQLSAAIANPGG
TPPQNPIARIARNQPTLITLTGPEIARAGADAILAGPRGSRITLMRSAGG
QLQARIILSQDTPDGFSKLYLYRGGDALNAVADFDISVGTGRSGASQTAA
ADDHGATARTATALLPAGASRASLAGQIGAADDVDMFRLNVTAPGSLVIT
SRGSSD
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mRNA from alignment at P-wetherbeei_contig1053:7110..8027+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1053.8.1 ID=mRNA_P-wetherbeei_contig1053.8.1|Name=mRNA_P-wetherbeei_contig1053.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=918bp|location=Sequence derived from alignment at P-wetherbeei_contig1053:7110..8027+ (Phaeothamnion wetherbeei SAG_119_79)
CCTGCCGCCGCAAGAAGCCTGGTGACAAACGACGCGGCGGGCTCAGTGGA
TTATCTCAATGCGCTGGCGGAACTCACCAGCAGCGCAAACCGCATCTCTG
CGGGAAGCTTGCATGAGGATGGGCCGTTGCTGCGCATTGCGCCAGATGGC
GCGCTTGCTGCAAGTGGCCTGCTGACGGAGGAGGATCGCGAACTGGCGCA
AACGGCGCGCCGCCTGTTTGTGCTGTATCAGTCCATCGGCGGGCGGGCCG
GAAGCCGGGCGCTTTTAGTTCAGCGCACCAAAGCTGGCCTGTTTGTGGCG
CGCGAAGGCGCAACGGGCGCGGTATCGGCGTCCCTGCGGGCGGCCATGGG
CGGGGCGGTCGCAGCCCTTGCCAGATCCGACGCCAGCCTGCCGGACGCGG
CGCGCGCCTGGCTGCCGCAACTCAGCGCTGCAATCGCCAATCCCGGCGGC
ACACCGCCGCAAAATCCTATTGCGCGGATTGCGCGCAATCAGCCAACCCT
CATTACCCTGACGGGGCCGGAAATTGCGCGCGCTGGCGCAGACGCCATTC
TGGCCGGCCCGCGCGGCAGCCGCATTACCCTGATGCGATCCGCAGGCGGA
CAATTGCAGGCAAGAATAATTTTGTCCCAGGACACGCCGGATGGCTTTTC
CAAACTATATTTATACCGCGGCGGTGACGCGCTGAATGCCGTGGCGGATT
TTGATATTTCCGTTGGGACCGGCAGAAGCGGGGCCAGCCAGACCGCTGCG
GCGGATGATCATGGCGCCACCGCGCGGACGGCAACCGCGCTGTTGCCAGC
AGGCGCCAGCCGCGCCAGCCTTGCCGGGCAGATCGGCGCCGCCGATGATG
TGGACATGTTCCGCCTTAATGTCACGGCCCCCGGATCGCTTGTCATTACA
TCGCGCGGGTCCAGCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1053:7110..8027+

>mRNA_P-wetherbeei_contig1053.8.1 ID=mRNA_P-wetherbeei_contig1053.8.1|Name=mRNA_P-wetherbeei_contig1053.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=918bp|location=Sequence derived from alignment at P-wetherbeei_contig1053:7110..8027+ (Phaeothamnion wetherbeei SAG_119_79)
CCTGCCGCCGCAAGAAGCCTGGTGACAAACGACGCGGCGGGCTCAGTGGA
TTATCTCAATGCGCTGGCGGAACTCACCAGCAGCGCAAACCGCATCTCTG
CGGGAAGCTTGCATGAGGATGGGCCGTTGCTGCGCATTGCGCCAGATGGC
GCGCTTGCTGCAAGTGGCCTGCTGACGGAGGAGGATCGCGAACTGGCGCA
AACGGCGCGCCGCCTGTTTGTGCTGTATCAGTCCATCGGCGGGCGGGCCG
GAAGCCGGGCGCTTTTAGTTCAGCGCACCAAAGCTGGCCTGTTTGTGGCG
CGCGAAGGCGCAACGGGCGCGGTATCGGCGTCCCTGCGGGCGGCCATGGG
CGGGGCGGTCGCAGCCCTTGCCAGATCCGACGCCAGCCTGCCGGACGCGG
CGCGCGCCTGGCTGCCGCAACTCAGCGCTGCAATCGCCAATCCCGGCGGC
ACACCGCCGCAAAATCCTATTGCGCGGATTGCGCGCAATCAGCCAACCCT
CATTACCCTGACGGGGCCGGAAATTGCGCGCGCTGGCGCAGACGCCATTC
TGGCCGGCCCGCGCGGCAGCCGCATTACCCTGATGCGATCCGCAGGCGGA
CAATTGCAGGCAAGAATAATTTTGTCCCAGGACACGCCGGATGGCTTTTC
CAAACTATATTTATACCGCGGCGGTGACGCGCTGAATGCCGTGGCGGATT
TTGATATTTCCGTTGGGACCGGCAGAAGCGGGGCCAGCCAGACCGCTGCG
GCGGATGATCATGGCGCCACCGCGCGGACGGCAACCGCGCTGTTGCCAGC
AGGCGCCAGCCGCGCCAGCCTTGCCGGGCAGATCGGCGCCGCCGATGATG
TGGACATGTTCCGCCTTAATGTCACGGCCCCCGGATCGCTTGTCATTACA
TCGCGCGGGTCCAGCGAT
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