mRNA_P-wetherbeei_contig10521.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10521.2.1
Unique NamemRNA_P-wetherbeei_contig10521.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10521.2.1 vs. uniprot
Match: A0A4D7B3G0_9HYPH (Uncharacterized protein n=2 Tax=Phreatobacter stygius TaxID=1940610 RepID=A0A4D7B3G0_9HYPH)

HSP 1 Score: 75.1 bits (183), Expect = 5.370e-12
Identity = 62/216 (28.70%), Postives = 105/216 (48.61%), Query Frame = 1 
Query:  274 VPTKPNPFQGYYAALGGSYGRSGVRSWSLFP-------TNP-----SYGGG-GVAGDIHPRGPSVTGVVGYNLAFGQ-WLAGFEIVARWGDEKGQGQAFNNASAS--------STLNGSYRYRNDLGGHVAARLGFTMEETLIFGKVGIGWTRIVETYSYNISPLT------------DSVSTTTTTWTPSVVFGLGIEHNFGRAFARLTAEIEAI 819
            V T      G Y A G  YG +  R++S+         T P     +YGGG G A ++   G +   ++G+NL+ G+ W++G E   R G E G G+    A+ +        ++ +G+Y+   D G  ++ R G+ +   L F ++G+G  R+ E   +N +                +++++ ++W PS V G G+E  FGR FAR+ AE EA+
Sbjct:   42 VATASRGVAGGYVAGGLGYGSAPPRAFSIIDGYACPGTTLPYIGPVTYGGGSGCATNVAMSGVTAHAILGWNLSGGEGWVSGIEARGRLGREGGTGRLGGTANVTMPGVPAYLNSASGAYKASLDGGLALSLRYGYAVSGFLPFVRIGLGAARLTEAVDFNATGAKICTIVPPGCTTGGTIASSKSSWLPSAVIGAGLEIPFGRFFARVDAEAEAV 257
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BLAST of mRNA_P-wetherbeei_contig10521.2.1 vs. uniprot
Match: UPI001C644EDD (hypothetical protein n=1 Tax=Bradyrhizobium sp. BR 10289 TaxID=2749993 RepID=UPI001C644EDD)

HSP 1 Score: 60.1 bits (144), Expect = 8.650e-7
Identity = 72/261 (27.59%), Postives = 103/261 (39.46%), Query Frame = 1 
Query:   34 AAISSVSATIANAAPSTDLVFCSRLPERSERLACYDAAARIAEARTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIVPTKPNPFQGYYAALGGSYGRSGVRSWSLFPTNPSYGGGGVAGDIHP-------RGPSVTGVVGYNLAFGQWLAGFEIVARWGDEKGQGQ----AFNN-----------------------ASASSTLNGSYRYRNDLGGHVAARLGFTMEETLIFGKVGIGWTRIVETYSYNISPLTDSV 714
            A +++++A  A A  S DL FC++L    ERLACYDAAARI   +                                   VP++   F G Y  + G Y    + S S  P NP  G    AG   P       +GPSV  + GYN+     L G E   R+   K        A++N                        + SS L+ +  YR      V+ R G+ + E L++ K GIG   + +T SY++S  + SV
Sbjct:    3 ATVAAIAAIPAWAEISEDLRFCAQLKAPKERLACYDAAARIEHRKPA-------------------FTAGPGLVEKQAAAVPSRSR-FSGAYVGVVGGYD---IASESALP-NPIIGYVPCAGAATPNAPGGAVQGPSVGFLAGYNVVERNLLLGLEARGRYSFAKASDTVLWPAYSNILPIWIGSCSPCSPDRQMISTDRVTLSSALSNTAVYRRPFAADVSVRAGYALSEWLLYAKAGIG---VEKTESYSLSDDSKSV 236
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10521.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A4D7B3G0_9HYPH5.370e-1228.70Uncharacterized protein n=2 Tax=Phreatobacter styg... [more]
UPI001C644EDD8.650e-727.59hypothetical protein n=1 Tax=Bradyrhizobium sp. BR... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10521contigP-wetherbeei_contig10521:741..1559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size819
Hectar predicted targeting categorychloroplast
Exons1
Cds size819
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185873.6552317-CDS-P-wetherbeei_contig10521:740..15591683185873.6552317-CDS-P-wetherbeei_contig10521:740..1559Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10521 741..1559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10521.2.1prot_P-wetherbeei_contig10521.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10521 741..1559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10521.2.1

>prot_P-wetherbeei_contig10521.2.1 ID=prot_P-wetherbeei_contig10521.2.1|Name=mRNA_P-wetherbeei_contig10521.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=273bp
MFVRVAFVFVCAAISSVSATIANAAPSTDLVFCSRLPERSERLACYDAAA
RIAEARTGATPTAPRPVAVRGATASVTAAAVSAREAHAREIVPTKPNPFQ
GYYAALGGSYGRSGVRSWSLFPTNPSYGGGGVAGDIHPRGPSVTGVVGYN
LAFGQWLAGFEIVARWGDEKGQGQAFNNASASSTLNGSYRYRNDLGGHVA
ARLGFTMEETLIFGKVGIGWTRIVETYSYNISPLTDSVSTTTTTWTPSVV
FGLGIEHNFGRAFARLTAEIEAI
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mRNA from alignment at P-wetherbeei_contig10521:741..1559-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10521.2.1 ID=mRNA_P-wetherbeei_contig10521.2.1|Name=mRNA_P-wetherbeei_contig10521.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=819bp|location=Sequence derived from alignment at P-wetherbeei_contig10521:741..1559- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGTCCGAGTTGCGTTCGTTTTTGTATGCGCTGCAATCTCGTCAGT
CTCGGCAACGATTGCGAATGCCGCGCCATCAACCGACTTGGTGTTCTGCT
CCAGGTTGCCGGAGCGCAGTGAACGCTTGGCCTGCTACGATGCCGCAGCC
AGGATCGCTGAGGCGCGGACAGGTGCAACGCCGACAGCACCGCGACCGGT
GGCGGTAAGAGGAGCAACGGCCAGCGTAACCGCTGCTGCCGTATCCGCGC
GCGAAGCCCACGCCAGGGAGATTGTGCCAACCAAGCCGAATCCCTTCCAG
GGCTACTACGCGGCACTGGGTGGAAGCTATGGCCGGTCGGGCGTTCGAAG
CTGGAGCTTATTTCCTACTAACCCAAGTTACGGTGGCGGCGGCGTAGCTG
GAGACATTCATCCGCGCGGCCCTTCGGTCACGGGAGTTGTCGGCTACAAT
CTCGCTTTCGGCCAATGGCTCGCGGGGTTCGAGATAGTCGCGCGATGGGG
TGACGAAAAGGGCCAAGGACAAGCATTCAACAACGCCAGCGCGAGTTCCA
CACTAAACGGCTCCTACCGCTATCGTAACGATCTCGGCGGTCATGTCGCC
GCTAGGCTCGGCTTCACCATGGAAGAAACGCTGATCTTCGGAAAGGTCGG
GATCGGCTGGACCCGCATCGTCGAAACATACAGCTATAATATTTCCCCGC
TCACAGACTCCGTGTCTACGACTACAACCACATGGACTCCGTCAGTCGTG
TTTGGGTTGGGCATAGAGCACAATTTTGGACGCGCGTTTGCACGGCTGAC
CGCCGAGATTGAGGCCATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10521:741..1559-

>mRNA_P-wetherbeei_contig10521.2.1 ID=mRNA_P-wetherbeei_contig10521.2.1|Name=mRNA_P-wetherbeei_contig10521.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=819bp|location=Sequence derived from alignment at P-wetherbeei_contig10521:741..1559- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGTCCGAGTTGCGTTCGTTTTTGTATGCGCTGCAATCTCGTCAGT
CTCGGCAACGATTGCGAATGCCGCGCCATCAACCGACTTGGTGTTCTGCT
CCAGGTTGCCGGAGCGCAGTGAACGCTTGGCCTGCTACGATGCCGCAGCC
AGGATCGCTGAGGCGCGGACAGGTGCAACGCCGACAGCACCGCGACCGGT
GGCGGTAAGAGGAGCAACGGCCAGCGTAACCGCTGCTGCCGTATCCGCGC
GCGAAGCCCACGCCAGGGAGATTGTGCCAACCAAGCCGAATCCCTTCCAG
GGCTACTACGCGGCACTGGGTGGAAGCTATGGCCGGTCGGGCGTTCGAAG
CTGGAGCTTATTTCCTACTAACCCAAGTTACGGTGGCGGCGGCGTAGCTG
GAGACATTCATCCGCGCGGCCCTTCGGTCACGGGAGTTGTCGGCTACAAT
CTCGCTTTCGGCCAATGGCTCGCGGGGTTCGAGATAGTCGCGCGATGGGG
TGACGAAAAGGGCCAAGGACAAGCATTCAACAACGCCAGCGCGAGTTCCA
CACTAAACGGCTCCTACCGCTATCGTAACGATCTCGGCGGTCATGTCGCC
GCTAGGCTCGGCTTCACCATGGAAGAAACGCTGATCTTCGGAAAGGTCGG
GATCGGCTGGACCCGCATCGTCGAAACATACAGCTATAATATTTCCCCGC
TCACAGACTCCGTGTCTACGACTACAACCACATGGACTCCGTCAGTCGTG
TTTGGGTTGGGCATAGAGCACAATTTTGGACGCGCGTTTGCACGGCTGAC
CGCCGAGATTGAGGCCATC
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