mRNA_P-wetherbeei_contig10521.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10521.1.1
Unique NamemRNA_P-wetherbeei_contig10521.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: A0A1G6M9U9_9GAMM (Cold shock protein, CspA family n=1 Tax=Acinetobacter marinus TaxID=281375 RepID=A0A1G6M9U9_9GAMM)

HSP 1 Score: 58.2 bits (139), Expect = 2.010e-8
Identity = 27/64 (42.19%), Postives = 44/64 (68.75%), Query Frame = 1
Query:   31 GKIGKYWGERGFGFIDRDDGQENVFFHVKQYQSGE-PEIGARVSFDISTSERNGRACAVDVRRV 219
            GKI  Y  ERGFGFI  D GQ+ +FFH+K +  G  P++G R++F ++  +++ +A AV++ R+
Sbjct:    5 GKIKNYHQERGFGFIQNDQGQD-IFFHIKDFPKGVLPQVGERLTFAVAQDKKSNKAKAVNITRL 67          
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: A0A829HFD2_9GAMM (CSD domain-containing protein n=4 Tax=Acinetobacter gyllenbergii TaxID=134534 RepID=A0A829HFD2_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 7.210e-8
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1
Query:   22 VIYGKIGKYWGERGFGFIDRDDGQENVFFHVKQYQ--SGEPEIGARVSFDISTSERNGRACAVDVRRVGGSETP 237
            ++ GKI KY  ERGFGFI+ +  Q ++FFH++ +    GEP++G ++ F +      G+  AV + R+    TP
Sbjct:    2 LVEGKIKKYNAERGFGFIEVEGKQSDIFFHIRDFPRAGGEPKLGEKLKFSMVHDTDKGKFKAVQIERLDLMPTP 75          
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: A0A525DCR6_9DELT (DUF1294 domain-containing protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A525DCR6_9DELT)

HSP 1 Score: 54.7 bits (130), Expect = 4.440e-7
Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 1
Query:   28 YGKIGKYWGERGFGFIDRDDGQENVFFHVKQYQS--GEPEIGARVSFDISTSERNGRACAVDVRRVGG 225
            YG I  +  E+GFGFI  + G+  +FFH+  Y +    P I  +V +  ST +R GRACAV+V  V G
Sbjct:    3 YGTISNWKEEKGFGFIAPESGENTIFFHINNYSNYHKRPVINLKVQYFTST-DRQGRACAVNVTPVTG 69          
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: A0A2S7J804_9BURK (Cold-shock protein n=1 Tax=Rhodoferax sp. TS-BS-61-7 TaxID=2094194 RepID=A0A2S7J804_9BURK)

HSP 1 Score: 53.9 bits (128), Expect = 7.260e-7
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   31 GKIGKYWGERGFGFIDRDDGQENVFFHVKQY--QSGEPEIGARVSFDISTSERNGRACAVDVRRVGGSETPP 240
            GK+ K+ GERGFGFI  DDG +++F H+  +     +P  G  ++F++   +RNG+  AV VRR G +   P
Sbjct:    8 GKLKKWNGERGFGFIVADDGGQDIFVHISAFARDGRQPTEGEVLTFEVQP-DRNGKRSAVRVRRPGEALAGP 78          
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: A0A7S4R7H7_9DINO (Hypothetical protein (Fragment) n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4R7H7_9DINO)

HSP 1 Score: 53.1 bits (126), Expect = 7.300e-7
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   31 GKIGKYWGERGFGFIDRDDGQENVFFHVKQYQSGEPEIGA--RVSFDISTSERNGRACAVDVRRVGG 225
            G + ++  ++GFGFI  +DG E+VF HV     GE  +G   RV F IS  +R G+  AVDV  +GG
Sbjct:   36 GTLKRWNSDKGFGFIQPEDGGEDVFCHVSGLLDGEGSVGEGDRVRFKISFDDRKGKDRAVDVVSLGG 102          
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: UPI001FB36D17 (cold shock domain-containing protein n=1 Tax=Tepidibacillus fermentans TaxID=1281767 RepID=UPI001FB36D17)

HSP 1 Score: 51.2 bits (121), Expect = 7.680e-7
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   55 ERGFGFIDRDDGQENVFFHVKQYQSGEPEI--GARVSFDISTSERNGRACAVDV 210
            E+GFGFI+RDDG+E+VF H+ Q +     I  GARV FDI+   +  +A  V V
Sbjct:   11 EKGFGFIERDDGKEDVFVHISQIKGNSSVIIEGARVKFDIAQGNKGVQALNVIV 64          
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: A0A7S4RA41_9DINO (Hypothetical protein (Fragment) n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RA41_9DINO)

HSP 1 Score: 52.8 bits (125), Expect = 7.710e-7
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   31 GKIGKYWGERGFGFIDRDDGQENVFFHVKQYQSGEPEIGA--RVSFDISTSERNGRACAVDVRRVGG 225
            G + ++  ++GFGFI  +DG E+VF HV     GE  +G   RV F +S  +R G+  AVDV  +GG
Sbjct:   33 GTLKRWHADKGFGFIQPEDGGEDVFCHVTGLLDGEGSVGEGDRVRFKLSFDDRKGKDRAVDVVSLGG 99          
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: N8R638_9GAMM (CSD domain-containing protein n=4 Tax=unclassified Acinetobacter TaxID=196816 RepID=N8R638_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 7.760e-7
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   25 IYGKIGKYWGERGFGFIDRDDGQENVFFHVKQYQ--SGEPEIGARVSFDISTSERNGRACAVDVRRV 219
            + GKI KY  ERGFGFI+ D  Q ++FFHV  +   +GEP++G R+ F I   E  G+  AV++ R+
Sbjct:    3 LEGKIKKYKAERGFGFIEVDGNQSDIFFHVTDFPQATGEPKLGERLKFLIV--EDKGKFKAVNIVRL 67          
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: UPI001BBF242D (CspA family cold shock protein n=1 Tax=Sandarakinorhabdus sp. TaxID=1916663 RepID=UPI001BBF242D)

HSP 1 Score: 53.9 bits (128), Expect = 1.320e-6
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   31 GKIGKYWGERGFGFIDRDDGQENVFFHVKQYQ-SGEPEIGARVSFDISTSERNGRACAVDVRRVG 222
            GK+  +  ++GFGF+ RDDG E+VF HV   + +G  ++      + S +ERNGR  A DV+ +G
Sbjct:  101 GKVKFFNAQKGFGFVVRDDGGEDVFLHVSALERAGLTDVAENQEIEFSLTERNGRISATDVQIIG 165          
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: A0A2A5BJI5_9GAMM (CSD domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2A5BJI5_9GAMM)

HSP 1 Score: 51.2 bits (121), Expect = 2.060e-6
Identity = 27/69 (39.13%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   19 KVIYGKIGKYWG-ERGFGFIDRDDGQENVFFHVKQYQSGE--PEIGARVSFDISTSERNGRACAVDVRR 216
            K + GKI K+W  ++GFGFI+++  ++ +F H+K + + +  P IG  V++ +S  ++NGR CA DV R
Sbjct:    8 KRLQGKI-KFWNTKKGFGFIEQEGEEKQMFIHIKAFANRQKKPAIGQVVTYMVS-EDKNGRPCAADVMR 74          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1G6M9U9_9GAMM2.010e-842.19Cold shock protein, CspA family n=1 Tax=Acinetobac... [more]
A0A829HFD2_9GAMM7.210e-836.49CSD domain-containing protein n=4 Tax=Acinetobacte... [more]
A0A525DCR6_9DELT4.440e-742.65DUF1294 domain-containing protein n=1 Tax=Desulfob... [more]
A0A2S7J804_9BURK7.260e-740.28Cold-shock protein n=1 Tax=Rhodoferax sp. TS-BS-61... [more]
A0A7S4R7H7_9DINO7.300e-743.28Hypothetical protein (Fragment) n=2 Tax=Alexandriu... [more]
UPI001FB36D177.680e-748.15cold shock domain-containing protein n=1 Tax=Tepid... [more]
A0A7S4RA41_9DINO7.710e-741.79Hypothetical protein (Fragment) n=2 Tax=Alexandriu... [more]
N8R638_9GAMM7.760e-744.78CSD domain-containing protein n=4 Tax=unclassified... [more]
UPI001BBF242D1.320e-640.00CspA family cold shock protein n=1 Tax=Sandarakino... [more]
A0A2A5BJI5_9GAMM2.060e-639.13CSD domain-containing protein n=1 Tax=Gammaproteob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10521contigP-wetherbeei_contig10521:140..382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1217658.F987_02288
Preferred namecspC
PFAMsCSD,Excalibur
Model size243
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.18e-08
EggNOG OGsCOG1278@1|root,COG1278@2|Bacteria,1N1M6@1224|Proteobacteria,1S9AQ@1236|Gammaproteobacteria,3NJTT@468|Moraxellaceae
DescriptionExcalibur calcium-binding domain
Cds size243
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185873.6319056-CDS-P-wetherbeei_contig10521:139..3821683185873.6319056-CDS-P-wetherbeei_contig10521:139..382Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10521 140..382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10521.1.1prot_P-wetherbeei_contig10521.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10521 140..382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10521.1.1

>prot_P-wetherbeei_contig10521.1.1 ID=prot_P-wetherbeei_contig10521.1.1|Name=mRNA_P-wetherbeei_contig10521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
MQTNGRKVIYGKIGKYWGERGFGFIDRDDGQENVFFHVKQYQSGEPEIGA
RVSFDISTSERNGRACAVDVRRVGGSETPPI
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mRNA from alignment at P-wetherbeei_contig10521:140..382+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10521.1.1 ID=mRNA_P-wetherbeei_contig10521.1.1|Name=mRNA_P-wetherbeei_contig10521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig10521:140..382+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAACAAATGGACGAAAAGTGATCTACGGAAAAATTGGAAAGTATTG GGGCGAGCGCGGGTTCGGGTTTATTGATCGCGATGATGGTCAGGAAAATG TATTTTTTCATGTGAAGCAATATCAAAGCGGCGAGCCGGAAATTGGCGCG AGGGTTAGTTTTGATATCAGCACTAGCGAGCGTAACGGCCGGGCCTGCGC GGTTGATGTTCGGCGGGTCGGCGGGAGCGAAACGCCGCCAATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10521:140..382+

>mRNA_P-wetherbeei_contig10521.1.1 ID=mRNA_P-wetherbeei_contig10521.1.1|Name=mRNA_P-wetherbeei_contig10521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig10521:140..382+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAACAAATGGACGAAAAGTGATCTACGGAAAAATTGGAAAGTATTG
GGGCGAGCGCGGGTTCGGGTTTATTGATCGCGATGATGGTCAGGAAAATG
TATTTTTTCATGTGAAGCAATATCAAAGCGGCGAGCCGGAAATTGGCGCG
AGGGTTAGTTTTGATATCAGCACTAGCGAGCGTAACGGCCGGGCCTGCGC
GGTTGATGTTCGGCGGGTCGGCGGGAGCGAAACGCCGCCAATT
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