mRNA_P-wetherbeei_contig10521.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: A0A1G6M9U9_9GAMM (Cold shock protein, CspA family n=1 Tax=Acinetobacter marinus TaxID=281375 RepID=A0A1G6M9U9_9GAMM) HSP 1 Score: 58.2 bits (139), Expect = 2.010e-8 Identity = 27/64 (42.19%), Postives = 44/64 (68.75%), Query Frame = 1 Query: 31 GKIGKYWGERGFGFIDRDDGQENVFFHVKQYQSGE-PEIGARVSFDISTSERNGRACAVDVRRV 219 GKI Y ERGFGFI D GQ+ +FFH+K + G P++G R++F ++ +++ +A AV++ R+ Sbjct: 5 GKIKNYHQERGFGFIQNDQGQD-IFFHIKDFPKGVLPQVGERLTFAVAQDKKSNKAKAVNITRL 67
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: A0A829HFD2_9GAMM (CSD domain-containing protein n=4 Tax=Acinetobacter gyllenbergii TaxID=134534 RepID=A0A829HFD2_9GAMM) HSP 1 Score: 57.0 bits (136), Expect = 7.210e-8 Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1 Query: 22 VIYGKIGKYWGERGFGFIDRDDGQENVFFHVKQYQ--SGEPEIGARVSFDISTSERNGRACAVDVRRVGGSETP 237 ++ GKI KY ERGFGFI+ + Q ++FFH++ + GEP++G ++ F + G+ AV + R+ TP Sbjct: 2 LVEGKIKKYNAERGFGFIEVEGKQSDIFFHIRDFPRAGGEPKLGEKLKFSMVHDTDKGKFKAVQIERLDLMPTP 75
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: A0A525DCR6_9DELT (DUF1294 domain-containing protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A525DCR6_9DELT) HSP 1 Score: 54.7 bits (130), Expect = 4.440e-7 Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 1 Query: 28 YGKIGKYWGERGFGFIDRDDGQENVFFHVKQYQS--GEPEIGARVSFDISTSERNGRACAVDVRRVGG 225 YG I + E+GFGFI + G+ +FFH+ Y + P I +V + ST +R GRACAV+V V G Sbjct: 3 YGTISNWKEEKGFGFIAPESGENTIFFHINNYSNYHKRPVINLKVQYFTST-DRQGRACAVNVTPVTG 69
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: A0A2S7J804_9BURK (Cold-shock protein n=1 Tax=Rhodoferax sp. TS-BS-61-7 TaxID=2094194 RepID=A0A2S7J804_9BURK) HSP 1 Score: 53.9 bits (128), Expect = 7.260e-7 Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 1 Query: 31 GKIGKYWGERGFGFIDRDDGQENVFFHVKQY--QSGEPEIGARVSFDISTSERNGRACAVDVRRVGGSETPP 240 GK+ K+ GERGFGFI DDG +++F H+ + +P G ++F++ +RNG+ AV VRR G + P Sbjct: 8 GKLKKWNGERGFGFIVADDGGQDIFVHISAFARDGRQPTEGEVLTFEVQP-DRNGKRSAVRVRRPGEALAGP 78
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: A0A7S4R7H7_9DINO (Hypothetical protein (Fragment) n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4R7H7_9DINO) HSP 1 Score: 53.1 bits (126), Expect = 7.300e-7 Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1 Query: 31 GKIGKYWGERGFGFIDRDDGQENVFFHVKQYQSGEPEIGA--RVSFDISTSERNGRACAVDVRRVGG 225 G + ++ ++GFGFI +DG E+VF HV GE +G RV F IS +R G+ AVDV +GG Sbjct: 36 GTLKRWNSDKGFGFIQPEDGGEDVFCHVSGLLDGEGSVGEGDRVRFKISFDDRKGKDRAVDVVSLGG 102
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: UPI001FB36D17 (cold shock domain-containing protein n=1 Tax=Tepidibacillus fermentans TaxID=1281767 RepID=UPI001FB36D17) HSP 1 Score: 51.2 bits (121), Expect = 7.680e-7 Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1 Query: 55 ERGFGFIDRDDGQENVFFHVKQYQSGEPEI--GARVSFDISTSERNGRACAVDV 210 E+GFGFI+RDDG+E+VF H+ Q + I GARV FDI+ + +A V V Sbjct: 11 EKGFGFIERDDGKEDVFVHISQIKGNSSVIIEGARVKFDIAQGNKGVQALNVIV 64
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: A0A7S4RA41_9DINO (Hypothetical protein (Fragment) n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RA41_9DINO) HSP 1 Score: 52.8 bits (125), Expect = 7.710e-7 Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1 Query: 31 GKIGKYWGERGFGFIDRDDGQENVFFHVKQYQSGEPEIGA--RVSFDISTSERNGRACAVDVRRVGG 225 G + ++ ++GFGFI +DG E+VF HV GE +G RV F +S +R G+ AVDV +GG Sbjct: 33 GTLKRWHADKGFGFIQPEDGGEDVFCHVTGLLDGEGSVGEGDRVRFKLSFDDRKGKDRAVDVVSLGG 99
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: N8R638_9GAMM (CSD domain-containing protein n=4 Tax=unclassified Acinetobacter TaxID=196816 RepID=N8R638_9GAMM) HSP 1 Score: 54.3 bits (129), Expect = 7.760e-7 Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 1 Query: 25 IYGKIGKYWGERGFGFIDRDDGQENVFFHVKQYQ--SGEPEIGARVSFDISTSERNGRACAVDVRRV 219 + GKI KY ERGFGFI+ D Q ++FFHV + +GEP++G R+ F I E G+ AV++ R+ Sbjct: 3 LEGKIKKYKAERGFGFIEVDGNQSDIFFHVTDFPQATGEPKLGERLKFLIV--EDKGKFKAVNIVRL 67
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: UPI001BBF242D (CspA family cold shock protein n=1 Tax=Sandarakinorhabdus sp. TaxID=1916663 RepID=UPI001BBF242D) HSP 1 Score: 53.9 bits (128), Expect = 1.320e-6 Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 1 Query: 31 GKIGKYWGERGFGFIDRDDGQENVFFHVKQYQ-SGEPEIGARVSFDISTSERNGRACAVDVRRVG 222 GK+ + ++GFGF+ RDDG E+VF HV + +G ++ + S +ERNGR A DV+ +G Sbjct: 101 GKVKFFNAQKGFGFVVRDDGGEDVFLHVSALERAGLTDVAENQEIEFSLTERNGRISATDVQIIG 165
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Match: A0A2A5BJI5_9GAMM (CSD domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2A5BJI5_9GAMM) HSP 1 Score: 51.2 bits (121), Expect = 2.060e-6 Identity = 27/69 (39.13%), Postives = 46/69 (66.67%), Query Frame = 1 Query: 19 KVIYGKIGKYWG-ERGFGFIDRDDGQENVFFHVKQYQSGE--PEIGARVSFDISTSERNGRACAVDVRR 216 K + GKI K+W ++GFGFI+++ ++ +F H+K + + + P IG V++ +S ++NGR CA DV R Sbjct: 8 KRLQGKI-KFWNTKKGFGFIEQEGEEKQMFIHIKAFANRQKKPAIGQVVTYMVS-EDKNGRPCAADVMR 74 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10521.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig10521.1.1 >prot_P-wetherbeei_contig10521.1.1 ID=prot_P-wetherbeei_contig10521.1.1|Name=mRNA_P-wetherbeei_contig10521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp MQTNGRKVIYGKIGKYWGERGFGFIDRDDGQENVFFHVKQYQSGEPEIGAback to top mRNA from alignment at P-wetherbeei_contig10521:140..382+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig10521.1.1 ID=mRNA_P-wetherbeei_contig10521.1.1|Name=mRNA_P-wetherbeei_contig10521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig10521:140..382+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig10521:140..382+ >mRNA_P-wetherbeei_contig10521.1.1 ID=mRNA_P-wetherbeei_contig10521.1.1|Name=mRNA_P-wetherbeei_contig10521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig10521:140..382+ (Phaeothamnion wetherbeei SAG_119_79)back to top |