mRNA_P-wetherbeei_contig10516.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10516.3.1
Unique NamemRNA_P-wetherbeei_contig10516.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10516.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10516contigP-wetherbeei_contig10516:59..1281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size583
Hectar predicted targeting categoryother localisation
Exons2
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185873.5327797-UTR-P-wetherbeei_contig10516:58..1481683185873.5327797-UTR-P-wetherbeei_contig10516:58..148Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10516 59..148 -
1683185873.5421255-UTR-P-wetherbeei_contig10516:790..8791683185873.5421255-UTR-P-wetherbeei_contig10516:790..879Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10516 791..879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185873.550641-CDS-P-wetherbeei_contig10516:879..12811683185873.550641-CDS-P-wetherbeei_contig10516:879..1281Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10516 880..1281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10516.3.1prot_P-wetherbeei_contig10516.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10516 880..1281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10516.3.1

>prot_P-wetherbeei_contig10516.3.1 ID=prot_P-wetherbeei_contig10516.3.1|Name=mRNA_P-wetherbeei_contig10516.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
GRKKIRLEHVYWLVRQTASLRPFPPREERETARLSLRASSLTVLLCRSPN
VVAECCYLCFLSLPRKRRCFVFSLSPIHGTAVASIDRSIRTSTRRRPQRA
DRIDLCAVLSWRRSWRANRAHLLAAIGFIRRGD*
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mRNA from alignment at P-wetherbeei_contig10516:59..1281-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10516.3.1 ID=mRNA_P-wetherbeei_contig10516.3.1|Name=mRNA_P-wetherbeei_contig10516.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1223bp|location=Sequence derived from alignment at P-wetherbeei_contig10516:59..1281- (Phaeothamnion wetherbeei SAG_119_79)
GGGAGAAAGAAAATAAGATTAGAGCATGTGTACTGGTTAGTTCGCCAAAC
AGCCAGCTTGAGGCCCTTCCCACCTCGCGAGGAGCGCGAGACGGCTCGTC
TTTCGCTCCGAGCGTCATCCTTGACGGTTCTTCTTTGCCGCAGCCCCAAC
GTCGTTGCCGAATGCTGCTACCTCTGCTTTCTTTCGCTTCCCAGAAAGCG
CCGCTGCTTCGTCTTCTCCCTTTCCCCGATCCACGGAACTGCCGTTGCTA
GCATCGACCGGTCCATCCGTACCTCGACCCGGCGGCGGCCCCAAAGGGCC
GATCGTATTGATCTCTGCGCTGTCTTGTCGTGGCGGCGGTCCTGGCGGGC
CAATCGGGCCCATTTGCTCGCCGCCATTGGCTTCATCCGTCGCGGCGACT
GAAGCCAATGGCGTTGGCGACGCAAGCGCCGCCACTGTTCTCGCCGCTGC
GGCAATCGCCGCCGGCGGCGCCGGCAGTCGTGGCGGCGGTGGCGGCGGCG
GCGGCGACGGCCCGGCTAAGGGACGCACCATCGCCGGCGGCGGCCTGGCC
GGTCCAGCGACGGGCCTTCTAGCGGCCGGTGCAGGTCCTGCGGCGGGTCC
CGACGCTGGCCTCCTTCCAGCGGCCCCCCCCCCAAGTCCAGCGGCTGGCC
GCGGCGGAGACGACGACTGCTGCGGACCGCGCGCCGGTGCCTGCGCGCCG
CATGCGGGAGCATGCGGACTGTGTACCTGAACCTGCGGACGGCGTGCGGC
GGGAGCCTGCGGACCGCGTACCGGAATCTGCGGACCGCGTGCGGGAGCCT
GCGGACCGCGTACCGGCCCTGCAACCGGTGCTTGTGCCGCACCAGGAGCA
CCACTGGTGCCGCCGCCACCGCTGCTCCCCGCAGCCGCTGCCCCCGCACT
GCCGCAAATCGCCGCCCCAGCGTCCCCGCCGCCCACGCCGCCAGCTGTGC
TGCCAGCTGCACCGCTGCCGCTGCCGCCAGCTGGACCGCCGCCGTCGCCG
CCGCCATCGCCAAAAAGGTCCTGCGGGAAGGCCTCGGCGCGGCCCTCCGC
GGTCGCCTGCTCCCGCTCTCGCCGCAGCGCCACCTCGAAGTCGCGGAGCT
GCCGCAGGAACGCCTCGTGCGGGTTGACTACAGGCCGGCGGCGGCGGAGG
TAAGCCAGCGCGTCGTCAAGCGAGAGGCCGCGCGCTTTCATAAGGTAGGC
GACGACAATGGCGGCGCTGCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10516:59..1281-

>mRNA_P-wetherbeei_contig10516.3.1 ID=mRNA_P-wetherbeei_contig10516.3.1|Name=mRNA_P-wetherbeei_contig10516.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig10516:59..1281- (Phaeothamnion wetherbeei SAG_119_79)
GGGAGAAAGAAAATAAGATTAGAGCATGTGTACTGGTTAGTTCGCCAAAC
AGCCAGCTTGAGGCCCTTCCCACCTCGCGAGGAGCGCGAGACGGCTCGTC
TTTCGCTCCGAGCGTCATCCTTGACGGTTCTTCTTTGCCGCAGCCCCAAC
GTCGTTGCCGAATGCTGCTACCTCTGCTTTCTTTCGCTTCCCAGAAAGCG
CCGCTGCTTCGTCTTCTCCCTTTCCCCGATCCACGGAACTGCCGTTGCTA
GCATCGACCGGTCCATCCGTACCTCGACCCGGCGGCGGCCCCAAAGGGCC
GATCGTATTGATCTCTGCGCTGTCTTGTCGTGGCGGCGGTCCTGGCGGGC
CAATCGGGCCCATTTGCTCGCCGCCATTGGCTTCATCCGTCGCGGCGACT
GA
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