mRNA_P-wetherbeei_contig10514.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10514.3.1
Unique NamemRNA_P-wetherbeei_contig10514.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10514.3.1 vs. uniprot
Match: A0A353LPJ3_9PROT (MarR family transcriptional regulator n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LPJ3_9PROT)

HSP 1 Score: 141 bits (356), Expect = 9.790e-41
Identity = 81/120 (67.50%), Postives = 94/120 (78.33%), Query Frame = 1
Query:   52 NIYTQEVGISGLTPRQYVVLTAVAVYEGQTQTDLVSATGIDRSTLADMIARMIASGLLDRERTEGDQRANSVTLTAAGKRQLAATAAKVRNAEKRVIAPVPASKRAVLLECLRAMGRMDD 411
            NIY QEVG  G TPRQ+VVLTAVA  EG +QTDLV+ATGIDRSTLADMI+RMI +G L R RT+ DQR N+V LTAAG+R L A   KV+ AEKRVI P+PASKRA LL+ LRA+   D+
Sbjct:    2 NIYMQEVGSGGPTPRQFVVLTAVAANEGISQTDLVAATGIDRSTLADMISRMIKNGHLSRNRTKDDQRVNAVKLTAAGRRVLKAAEPKVKAAEKRVIEPLPASKRAALLDALRALAGRDE 121          
BLAST of mRNA_P-wetherbeei_contig10514.3.1 vs. uniprot
Match: A0A2S7K6K6_9PROT (MarR family transcriptional regulator n=1 Tax=Marinicaulis flavus TaxID=2058213 RepID=A0A2S7K6K6_9PROT)

HSP 1 Score: 141 bits (356), Expect = 7.130e-40
Identity = 86/151 (56.95%), Postives = 108/151 (71.52%), Query Frame = 1
Query:    1 LTDSPGHLLRRAEQRASNIYTQEVGISGLTPRQYVVLTAVAVYEGQTQTDLVSATGIDRSTLADMIARMIASGLLDRERTEGDQRANSVTLTAAGKRQLAATAAKVRNAEKRVIAPVPASKRAVLLECLRA----MGRMDDGKA-PAKAAA 438
            L +SPGHLLRRA+Q A ++Y+ EVG SG TPRQY VL  VA  +G +QTDLV  TGIDRSTLADMIARM+  GLL R+RT+ D RAN+V++TAAGKR L A  AKV  AE   +A +P +++A  ++ LRA    + +M DG A PAK  A
Sbjct:    5 LKNSPGHLLRRAQQYAHDLYSTEVGASGPTPRQYEVLHVVAANDGLSQTDLVQHTGIDRSTLADMIARMMKKGLLSRKRTKEDARANAVSITAAGKRMLNAANAKVARAENAALAVLPKTQQAAFMKALRAYAEALDKMADGAAAPAKKKA 155          
BLAST of mRNA_P-wetherbeei_contig10514.3.1 vs. uniprot
Match: A0A3B0RNP8_9ZZZZ (Transcriptional regulator, MarR family n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0RNP8_9ZZZZ)

HSP 1 Score: 135 bits (341), Expect = 1.210e-37
Identity = 79/149 (53.02%), Postives = 108/149 (72.48%), Query Frame = 1
Query:    1 LTDSPGHLLRRAEQRASNIYTQEVGISGLTPRQYVVLTAVAVYEGQTQTDLVSATGIDRSTLADMIARMIASGLLDRERTEGDQRANSVTLTAAGKRQLAATAAKVRNAEKRVIAPVPASKRAVLLECLRAMGRMDDGKAPAKAAARRR 447
            L  SPGHLLRRA+Q A ++Y++EVG SG TPRQ+ VL+ VA  EG +QTDLV  TGIDRSTLADMIARMI  GLL R+RT+ D RAN+V+++AAGKR L +  AKV  +++ V++ +P +++A  ++ L+A     D    A AA ++R
Sbjct:    5 LKSSPGHLLRRAQQYAHDLYSKEVGTSGPTPRQFEVLSVVAKNEGLSQTDLVRHTGIDRSTLADMIARMIKKGLLTRKRTKEDARANAVSISAAGKRILKSADAKVNKSDRAVLSVLPKTQQAGFMKALKAYADALDSMESASAAPKKR 153          
BLAST of mRNA_P-wetherbeei_contig10514.3.1 vs. uniprot
Match: A0A520R353_9PROT (MarR family transcriptional regulator n=1 Tax=Parvularculaceae bacterium TaxID=2510335 RepID=A0A520R353_9PROT)

HSP 1 Score: 135 bits (341), Expect = 2.200e-37
Identity = 81/149 (54.36%), Postives = 104/149 (69.80%), Query Frame = 1
Query:    1 LTDSPGHLLRRAEQRASNIYTQEVGISGLTPRQYVVLTAVAVYEGQTQTDLVSATGIDRSTLADMIARMIASGLLDRERTEGDQRANSVTLTAAGKRQLAATAAKVRNAEKRVIAPVPASKRAVLLECLRAMGRMDDGKAPAKAAARRR 447
            L  SPGHLLRRA+Q A ++Y++EVG SG TPRQ+ VL  V+  EG +QTDLV ATGIDRSTLADMIARMI  GLL R RT+ D RAN+V++TAAGK+ L     +V  AE   +A +P +++A  ++ L A     D  A A+AA R+R
Sbjct:    5 LRKSPGHLLRRAQQFAHDLYSKEVGSSGPTPRQFEVLHTVSQNEGLSQTDLVRATGIDRSTLADMIARMIKKGLLSRSRTKEDARANAVSITAAGKKMLNGAMNRVGKAETAALAVLPKTQQAAFMKALSAYAEALDKMAEAEAAPRKR 153          
BLAST of mRNA_P-wetherbeei_contig10514.3.1 vs. uniprot
Match: A0A850SRU1_9PROT (MarR family transcriptional regulator n=1 Tax=Parvularculaceae bacterium TaxID=2510335 RepID=A0A850SRU1_9PROT)

HSP 1 Score: 134 bits (337), Expect = 3.650e-37
Identity = 74/131 (56.49%), Postives = 98/131 (74.81%), Query Frame = 1
Query:    1 LTDSPGHLLRRAEQRASNIYTQEVGISGLTPRQYVVLTAVAVYEGQTQTDLVSATGIDRSTLADMIARMIASGLLDRERTEGDQRANSVTLTAAGKRQLAATAAKVRNAEKRVIAPVPASKRAVLLECLRA 393
            L +SPGHLLRRA+Q A+++Y +EVG SG TPRQ+ VL +VA  EG +QTDLV ATGIDRSTLADMIARM+  GLL R RT+ D RAN+V++TA+GKR L++  + V  AE   +  +PA++R   ++ L A
Sbjct:    8 LKNSPGHLLRRAQQYANDLYAKEVGASGPTPRQFEVLYSVAQNEGLSQTDLVRATGIDRSTLADMIARMLKKGLLSRSRTKEDARANAVSITASGKRMLSSAQSAVNRAEAGTLGVLPAAQRGAFMKALSA 138          
BLAST of mRNA_P-wetherbeei_contig10514.3.1 vs. uniprot
Match: A0A239PLK6_9PROT (Transcriptional regulator, MarR family n=1 Tax=Amphiplicatus metriothermophilus TaxID=1519374 RepID=A0A239PLK6_9PROT)

HSP 1 Score: 134 bits (336), Expect = 6.710e-37
Identity = 79/152 (51.97%), Postives = 107/152 (70.39%), Query Frame = 1
Query:    1 LTDSPGHLLRRAEQRASNIYTQEVGISGLTPRQYVVLTAVAVYEGQTQTDLVSATGIDRSTLADMIARMIASGLLDRERTEGDQRANSVTLTAAGKRQLAATAAKVRNAEKRVIAPVPASKRAVLLECL----RAMGRMDDGKAPAKAAARR 444
            L +SPGHLLRRA+Q A ++Y +EVG  G TPRQ+ VL  VA  EG +QTDLV ATGIDRSTLADMIARMI  GLL R+RT+ D RAN+V++TAAGKR L +  + V+ AE   +A +P +++   +  L     A+ +M++  APA+ A ++
Sbjct:    6 LKNSPGHLLRRAQQYAHDLYAKEVGPKGPTPRQFEVLHTVAQNEGLSQTDLVRATGIDRSTLADMIARMIKKGLLSRQRTKADARANAVSITAAGKRMLQSAMSSVQKAENATLAVLPKTQQTAFMRALTAYAEALDKMEE--APARPAKKK 155          
BLAST of mRNA_P-wetherbeei_contig10514.3.1 vs. uniprot
Match: A0A2E1X9V4_9PROT (MarR family transcriptional regulator n=1 Tax=Parvularcula sp. TaxID=1979207 RepID=A0A2E1X9V4_9PROT)

HSP 1 Score: 131 bits (330), Expect = 5.720e-36
Identity = 80/148 (54.05%), Postives = 104/148 (70.27%), Query Frame = 1
Query:    1 LTDSPGHLLRRAEQRASNIYTQEVGISGLTPRQYVVLTAVAVYEGQTQTDLVSATGIDRSTLADMIARMIASGLLDRERTEGDQRANSVTLTAAGKRQLAATAAKVRNAEKRVIAPVPASKRAVLLECLRA----MGRMDDGKA-PAK 429
            L +SPGHLLRRA+Q A ++Y+ EVG +G TPRQY VL  VA   G +QTDLV  TGIDRSTLADMIARM+  GLL R+RT+ D RAN+V++T AG+R L A  +KV  AE   +A +P +++A  +  LRA    + +M +G A PAK
Sbjct:    5 LKNSPGHLLRRAQQYAHDLYSTEVGPNGPTPRQYEVLHVVAQNAGLSQTDLVQQTGIDRSTLADMIARMMKKGLLSRKRTKEDARANAVSITPAGRRMLTAANSKVAKAENAALAVLPKTQQAAFMRSLRAYAEALDKMAEGAATPAK 152          
BLAST of mRNA_P-wetherbeei_contig10514.3.1 vs. uniprot
Match: A0A355C4A5_9PROT (MarR family transcriptional regulator n=1 Tax=Parvularcula sp. TaxID=1979207 RepID=A0A355C4A5_9PROT)

HSP 1 Score: 129 bits (325), Expect = 1.840e-35
Identity = 78/152 (51.32%), Postives = 105/152 (69.08%), Query Frame = 1
Query:    1 LTDSPGHLLRRAEQRASNIYTQEVGISGLTPRQYVVLTAVAVYEGQTQTDLVSATGIDRSTLADMIARMIASGLLDRERTEGDQRANSVTLTAAGKRQLAATAAKVRNAEKRVIAPVPASKRAVLLECLRAMGRMDD--GKAPAKAAARRRK 450
            L  SPGHLLRRA+Q A ++++  VG  G TPRQ+ VL  V+  +G +QTDLV+ATGIDRSTLADMIARM+  GLL R RT+ D RAN+V++TAAGKR L+  A+ V  A+   ++ +P S +A  ++ L A     D  G+APAK  A+ +K
Sbjct:    5 LKKSPGHLLRRAQQHAHDLHSTAVGADGPTPRQFEVLHVVSKNDGLSQTDLVNATGIDRSTLADMIARMLKKGLLSRSRTKEDARANAVSITAAGKRMLSGAASGVAKADAGALSVLPKSHQAAFMKALVAYADALDAMGEAPAKKPAKAKK 156          
BLAST of mRNA_P-wetherbeei_contig10514.3.1 vs. uniprot
Match: A0A845Q7N6_9HYPH (MarR family transcriptional regulator n=1 Tax=Pyruvatibacter mobilis TaxID=1712261 RepID=A0A845Q7N6_9HYPH)

HSP 1 Score: 130 bits (328), Expect = 3.010e-35
Identity = 81/150 (54.00%), Postives = 99/150 (66.00%), Query Frame = 1
Query:    1 LTDSPGHLLRRAEQRASNIYTQEVGISGLTPRQYVVLTAVAVYEGQTQTDLVSATGIDRSTLADMIARMIASGLLDRERTEGDQRANSVTLTAAGKRQLAATAAKVRNAEKRVIAPVPASKRAVLLECLRAMGRMDDGKAPAKAAARRRK 450
            L  SPGHLLRRA Q A +++T+EVG  GLT RQ+ VL  V   EG +QTDLV  TGIDRSTLADMI+RMI+ GLL R+RT  D+RANSV+LTAAG+R L AT  +   AEK V+  +   +R  L E L  +  + D    A  AA  RK
Sbjct:    7 LDQSPGHLLRRATQFAQDLFTKEVGPGGLTARQFAVLVTVERDEGLSQTDLVKQTGIDRSTLADMISRMISRGLLQRKRTASDRRANSVSLTAAGRRALNATMPQAVRAEKMVLDALSPKQREALFEVLGVISNLADDAVDAVNAATGRK 156          
BLAST of mRNA_P-wetherbeei_contig10514.3.1 vs. uniprot
Match: A0A7Y2CDU9_9PROT (Winged helix-turn-helix transcriptional regulator n=1 Tax=Marinicaulis sp. TaxID=2174442 RepID=A0A7Y2CDU9_9PROT)

HSP 1 Score: 129 bits (325), Expect = 3.080e-35
Identity = 74/149 (49.66%), Postives = 106/149 (71.14%), Query Frame = 1
Query:    1 LTDSPGHLLRRAEQRASNIYTQEVGISGLTPRQYVVLTAVAVYEGQTQTDLVSATGIDRSTLADMIARMIASGLLDRERTEGDQRANSVTLTAAGKRQLAATAAKVRNAEKRVIAPVPASKRAVLLECLRAMGRMDDGKAPAKAAARRR 447
            L  SPGHLLRRA+Q + ++Y+++VG SG TPRQ+ VL  V+  EG +QTDLV  TGIDRSTLADMIARMI  GLL R+RT+ D RAN+V+++AAGKR L    +KV  +++ V++ +P S++A  ++ L+A     D    + AA +++
Sbjct:    5 LKSSPGHLLRRAQQYSHDLYSKDVGSSGPTPRQFEVLHVVSKNEGLSQTDLVRHTGIDRSTLADMIARMIKKGLLTRKRTKEDARANAVSISAAGKRMLRGAESKVNKSDRAVLSVLPKSQQAGFMKALKAYAEALDKMEQSSAAPKKK 153          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10514.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A353LPJ3_9PROT9.790e-4167.50MarR family transcriptional regulator n=2 Tax=Alph... [more]
A0A2S7K6K6_9PROT7.130e-4056.95MarR family transcriptional regulator n=1 Tax=Mari... [more]
A0A3B0RNP8_9ZZZZ1.210e-3753.02Transcriptional regulator, MarR family n=1 Tax=hyd... [more]
A0A520R353_9PROT2.200e-3754.36MarR family transcriptional regulator n=1 Tax=Parv... [more]
A0A850SRU1_9PROT3.650e-3756.49MarR family transcriptional regulator n=1 Tax=Parv... [more]
A0A239PLK6_9PROT6.710e-3751.97Transcriptional regulator, MarR family n=1 Tax=Amp... [more]
A0A2E1X9V4_9PROT5.720e-3654.05MarR family transcriptional regulator n=1 Tax=Parv... [more]
A0A355C4A5_9PROT1.840e-3551.32MarR family transcriptional regulator n=1 Tax=Parv... [more]
A0A845Q7N6_9HYPH3.010e-3554.00MarR family transcriptional regulator n=1 Tax=Pyru... [more]
A0A7Y2CDU9_9PROT3.080e-3549.66Winged helix-turn-helix transcriptional regulator ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10514contigP-wetherbeei_contig10514:737..1189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog314260.PB2503_04097
PFAMsMarR,MarR_2
Model size453
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.95e-34
EggNOG OGsCOG1846@1|root,COG1846@2|Bacteria,1RJRY@1224|Proteobacteria,2UA4D@28211|Alphaproteobacteria
DescriptionCOG1846 Transcriptional regulators
Cds size453
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185873.4733198-CDS-P-wetherbeei_contig10514:736..11891683185873.4733198-CDS-P-wetherbeei_contig10514:736..1189Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10514 737..1189 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10514.3.1prot_P-wetherbeei_contig10514.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10514 737..1189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10514.3.1

>prot_P-wetherbeei_contig10514.3.1 ID=prot_P-wetherbeei_contig10514.3.1|Name=mRNA_P-wetherbeei_contig10514.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
LTDSPGHLLRRAEQRASNIYTQEVGISGLTPRQYVVLTAVAVYEGQTQTD
LVSATGIDRSTLADMIARMIASGLLDRERTEGDQRANSVTLTAAGKRQLA
ATAAKVRNAEKRVIAPVPASKRAVLLECLRAMGRMDDGKAPAKAAARRRK
*
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mRNA from alignment at P-wetherbeei_contig10514:737..1189-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10514.3.1 ID=mRNA_P-wetherbeei_contig10514.3.1|Name=mRNA_P-wetherbeei_contig10514.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig10514:737..1189- (Phaeothamnion wetherbeei SAG_119_79)
TTGACGGATTCGCCCGGACATCTGTTGCGCCGCGCCGAACAGCGGGCATC CAACATCTACACACAAGAGGTTGGGATCAGCGGCCTGACCCCGCGCCAAT ATGTGGTGCTTACTGCTGTGGCGGTCTATGAAGGCCAGACCCAGACCGAT CTGGTAAGCGCCACCGGCATCGACCGCAGCACCCTTGCAGACATGATTGC CCGCATGATCGCCAGCGGCCTGCTGGATCGTGAACGCACAGAGGGCGATC AGCGCGCCAACTCCGTTACCCTGACGGCGGCGGGTAAACGCCAGTTGGCG GCAACGGCGGCAAAGGTGCGCAATGCAGAAAAACGTGTCATTGCGCCGGT TCCCGCCAGCAAGCGGGCGGTGCTGCTGGAATGCCTGCGCGCCATGGGGC GCATGGATGATGGGAAAGCTCCGGCAAAGGCTGCCGCCAGGCGCCGTAAA TAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10514:737..1189-

>mRNA_P-wetherbeei_contig10514.3.1 ID=mRNA_P-wetherbeei_contig10514.3.1|Name=mRNA_P-wetherbeei_contig10514.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig10514:737..1189- (Phaeothamnion wetherbeei SAG_119_79)
TTGACGGATTCGCCCGGACATCTGTTGCGCCGCGCCGAACAGCGGGCATC
CAACATCTACACACAAGAGGTTGGGATCAGCGGCCTGACCCCGCGCCAAT
ATGTGGTGCTTACTGCTGTGGCGGTCTATGAAGGCCAGACCCAGACCGAT
CTGGTAAGCGCCACCGGCATCGACCGCAGCACCCTTGCAGACATGATTGC
CCGCATGATCGCCAGCGGCCTGCTGGATCGTGAACGCACAGAGGGCGATC
AGCGCGCCAACTCCGTTACCCTGACGGCGGCGGGTAAACGCCAGTTGGCG
GCAACGGCGGCAAAGGTGCGCAATGCAGAAAAACGTGTCATTGCGCCGGT
TCCCGCCAGCAAGCGGGCGGTGCTGCTGGAATGCCTGCGCGCCATGGGGC
GCATGGATGATGGGAAAGCTCCGGCAAAGGCTGCCGCCAGGCGCCGTAAA
TAA
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