mRNA_P-wetherbeei_contig10514.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10514.2.1
Unique NamemRNA_P-wetherbeei_contig10514.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10514.2.1 vs. uniprot
Match: A0A3C0TS36_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TS36_9PROT)

HSP 1 Score: 76.3 bits (186), Expect = 3.680e-15
Identity = 58/133 (43.61%), Postives = 69/133 (51.88%), Query Frame = 1 
Query:    1 ANYMVNVHPSSLIGAQAYAVQLRRQYGQEETARAINLDDRQTGRSNSQGR---RAAFELERGKDGDKKPAPAAGAKADPARTLAAGNPTVGEVTP-RSNPTARPLFSSTSREAPNPNAQLRNTRPGTHLDITV 387
            A  M +V+PSSLIGAQAYA QLRRQY QEET RA NL + +  RS  Q     RA+  +E G+   +     A  ++   R  A GNPT  E    + NP                 AQLR  RPG HLDITV
Sbjct:    5 AQIMASVNPSSLIGAQAYATQLRRQYSQEETERAFNLTEGRDLRSRPQAAEKTRASSSVEEGRRSTQGDNSRAQRESRAQREPAPGNPTASEAAAAQPNPXXXXXXXXXXXXXXXXXAQLRTVRPGAHLDITV 137
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BLAST of mRNA_P-wetherbeei_contig10514.2.1 vs. uniprot
Match: A0A3B9BRR8_9PROT (Uncharacterized protein n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9BRR8_9PROT)

HSP 1 Score: 63.9 bits (154), Expect = 2.130e-10
Identity = 51/139 (36.69%), Postives = 73/139 (52.52%), Query Frame = 1 
Query:   19 VHPSSLIGAQAYAVQLRRQYGQEETARAINLDDRQTGRSNSQ----------------GRRAAFELERGKDGDKKPAPAAGAKADPARTLAAGNPTVGEVTPRSNPTARPLFSSTSREAPNPNAQLRNTRPGTHLDITV 387
            + PS+LIGAQAYA Q+RRQ  +    RA  +    + R++ Q                 +R A +LE  +  + +P      +   +R  +A NPT+GEV  R+NP A+P  + +SREAPN  A+ R   PGT LDI V
Sbjct:    4 IGPSNLIGAQAYASQIRRQSAENTDVRAAAIQREASERTSRQXXXXXXAVRIDLRQVDAKRTARQLELAELSEARP------EQGTSRLSSALNPTLGEVERRANPEAQPRPAPSSREAPNGAARERFVPPGTQLDIRV 136
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10514.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3C0TS36_9PROT3.680e-1543.61Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A3B9BRR8_9PROT2.130e-1036.69Uncharacterized protein n=3 Tax=Alphaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10514contigP-wetherbeei_contig10514:340..729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size390
Hectar predicted targeting categoryother localisation
Exons1
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185873.4232733-UTR-P-wetherbeei_contig10514:339..3481683185873.4232733-UTR-P-wetherbeei_contig10514:339..348Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10514 340..348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185873.4327738-CDS-P-wetherbeei_contig10514:348..7291683185873.4327738-CDS-P-wetherbeei_contig10514:348..729Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10514 349..729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10514.2.1prot_P-wetherbeei_contig10514.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10514 349..729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10514.2.1

>prot_P-wetherbeei_contig10514.2.1 ID=prot_P-wetherbeei_contig10514.2.1|Name=mRNA_P-wetherbeei_contig10514.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
MVNVHPSSLIGAQAYAVQLRRQYGQEETARAINLDDRQTGRSNSQGRRAA
FELERGKDGDKKPAPAAGAKADPARTLAAGNPTVGEVTPRSNPTARPLFS
STSREAPNPNAQLRNTRPGTHLDITV*
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mRNA from alignment at P-wetherbeei_contig10514:340..729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10514.2.1 ID=mRNA_P-wetherbeei_contig10514.2.1|Name=mRNA_P-wetherbeei_contig10514.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig10514:340..729+ (Phaeothamnion wetherbeei SAG_119_79)
GCAAATTATATGGTCAATGTTCATCCATCCAGCCTGATAGGTGCGCAAGC
CTATGCAGTCCAACTGCGCCGTCAGTATGGGCAGGAGGAAACCGCGCGCG
CCATCAACCTGGATGACCGCCAGACCGGACGTTCCAACAGTCAGGGAAGA
CGCGCCGCTTTTGAACTTGAGCGGGGCAAGGACGGGGACAAAAAACCAGC
CCCAGCCGCAGGCGCCAAAGCTGATCCTGCGCGCACACTGGCTGCAGGCA
ACCCGACCGTCGGTGAAGTAACCCCCCGGTCAAATCCTACCGCACGCCCG
CTATTTTCAAGCACAAGCCGCGAGGCGCCAAACCCCAACGCGCAGCTACG
CAACACCCGCCCAGGGACGCATCTCGACATTACAGTTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10514:340..729+

>mRNA_P-wetherbeei_contig10514.2.1 ID=mRNA_P-wetherbeei_contig10514.2.1|Name=mRNA_P-wetherbeei_contig10514.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig10514:340..729+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCAATGTTCATCCATCCAGCCTGATAGGTGCGCAAGCCTATGCAGT
CCAACTGCGCCGTCAGTATGGGCAGGAGGAAACCGCGCGCGCCATCAACC
TGGATGACCGCCAGACCGGACGTTCCAACAGTCAGGGAAGACGCGCCGCT
TTTGAACTTGAGCGGGGCAAGGACGGGGACAAAAAACCAGCCCCAGCCGC
AGGCGCCAAAGCTGATCCTGCGCGCACACTGGCTGCAGGCAACCCGACCG
TCGGTGAAGTAACCCCCCGGTCAAATCCTACCGCACGCCCGCTATTTTCA
AGCACAAGCCGCGAGGCGCCAAACCCCAACGCGCAGCTACGCAACACCCG
CCCAGGGACGCATCTCGACATTACAGTTTAG
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