mRNA_P-wetherbeei_contig10514.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10514.1.1
Unique NamemRNA_P-wetherbeei_contig10514.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10514.1.1 vs. uniprot
Match: A0A3C0TS73_9PROT (Cytochrome c-type biogenesis protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TS73_9PROT)

HSP 1 Score: 122 bits (306), Expect = 8.070e-34
Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = 1
Query:    1 LAGDLRRIVRERVAAGDTDSQVRAHLVARYGDWVLMRPPFKLSTLVLWAGPPVLLVLGGIALWAGQRRR-----EAPVLQPLTEAEQAKLREIT 267
            LAGDLRRIVRERVAAG+TD QVRAHLVAR+GDWVLMRPP +LSTL LW GPP+LL+ GG+ LW   RRR     EAP    LT  E+A++ ++T
Sbjct:   49 LAGDLRRIVRERVAAGETDDQVRAHLVARFGDWVLMRPPLRLSTLALWGGPPLLLLTGGLMLWVNLRRRQQMAPEAPA--DLTPQERARIDQLT 140          
BLAST of mRNA_P-wetherbeei_contig10514.1.1 vs. uniprot
Match: A0A353LQM4_9PROT (Cytochrome c-type biogenesis protein n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LQM4_9PROT)

HSP 1 Score: 103 bits (257), Expect = 2.970e-26
Identity = 51/90 (56.67%), Postives = 69/90 (76.67%), Query Frame = 1
Query:    1 LAGDLRRIVRERVAAGDTDSQVRAHLVARYGDWVLMRPPFKLSTLVLWAGPPVLLVLGGIALWAGQRR-REAPVLQPLTEAEQAKLREIT 267
            LA DLR+IVR+R+ AGD+D++VR  LV RYG+WVLMRPPFKL+TL+LW GP +LL +GGIAL  G RR ++    Q L+  E+A++  +T
Sbjct:   62 LAQDLRKIVRQRIEAGDSDAEVRQFLVDRYGEWVLMRPPFKLTTLLLWLGPVLLLAVGGIALLIGIRRGKQVQQAQALSPEEEARIEALT 151          
BLAST of mRNA_P-wetherbeei_contig10514.1.1 vs. uniprot
Match: A0A2S9QFG3_9HYPH (Cytochrome c-type biogenesis protein n=4 Tax=Labrys TaxID=204476 RepID=A0A2S9QFG3_9HYPH)

HSP 1 Score: 103 bits (256), Expect = 3.990e-26
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = 1
Query:    1 LAGDLRRIVRERVAAGDTDSQVRAHLVARYGDWVLMRPPFKLSTLVLWAGPPVLLVLGGIALWAGQRRREAPVLQPLTEAEQAKLREITAPD 276
            LA DLR +VRER+ AGD+D++V+  LVARYGD++L++PP +  TL LW+GPP LL+LGGIA++   RRR+A    PL+  EQA++ +I   D
Sbjct:   60 LAKDLRILVRERLKAGDSDAEVKDFLVARYGDFILLKPPLEWRTLALWSGPPALLLLGGIAIFLSTRRRQAAAPAPLSSDEQARIDDILGRD 151          
BLAST of mRNA_P-wetherbeei_contig10514.1.1 vs. uniprot
Match: A0A521W052_9HYPH (Cytochrome c-type biogenesis protein n=1 Tax=Xanthobacteraceae bacterium TaxID=2021379 RepID=A0A521W052_9HYPH)

HSP 1 Score: 100 bits (250), Expect = 4.800e-25
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    1 LAGDLRRIVRERVAAGDTDSQVRAHLVARYGDWVLMRPPFKLSTLVLWAGPPVLLVLGGIALWAGQRRREAPV-----LQPLTEAEQAKLREITAPD 276
            LA DLR +VRER+ AGD+D QV   LVARYG++VL++P F+L TL+LW  PP +LVLG +ALW   RRR AP      + PL+  EQ +LR + + D
Sbjct:   67 LARDLRLLVRERIGAGDSDGQVINFLVARYGEFVLLKPRFELHTLLLWGVPPAVLVLGALALWVNARRRRAPASSVPEIAPLSAEEQRRLRRLISDD 163          
BLAST of mRNA_P-wetherbeei_contig10514.1.1 vs. uniprot
Match: UPI00146B9DE1 (cytochrome c-type biogenesis protein CcmH n=1 Tax=Sneathiella chinensis TaxID=349750 RepID=UPI00146B9DE1)

HSP 1 Score: 99.8 bits (247), Expect = 7.610e-25
Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 LAGDLRRIVRERVAAGDTDSQVRAHLVARYGDWVLMRPPFKLSTLVLWAGPPVLLVLGGIALWAGQRRREAP----VLQPLTEAEQAKL 255
            LA DLR +VRERVAAGDTD QVR +LV RYGDWVL+ PPFK+ T +LW GP V+ +LGG+A  A  RRR +      +Q L+  EQ +L
Sbjct:   44 LARDLRGVVRERVAAGDTDDQVRDYLVVRYGDWVLLNPPFKMKTALLWVGPAVIFLLGGLAAIAFLRRRSSAGGGEAVQRLSPEEQEEL 132          
BLAST of mRNA_P-wetherbeei_contig10514.1.1 vs. uniprot
Match: UPI000780F5A4 (cytochrome c-type biogenesis protein CcmH n=1 Tax=Aureimonas sp. AU4 TaxID=1638163 RepID=UPI000780F5A4)

HSP 1 Score: 99.0 bits (245), Expect = 1.840e-24
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 1
Query:    1 LAGDLRRIVRERVAAGDTDSQVRAHLVARYGDWVLMRPPFKLSTLVLWAGPPVLLVLGGIALWAGQRRREAPVLQPLTEAEQAKLREITAPD 276
            LA DLR +VR+R+ AGD+D  VR +LVARYG +VL+RP  +  T+ LW  P VLLV GG+  W+ +RR  A   +PL+EAE+ +LR +TA D
Sbjct:   60 LAKDLRVLVRQRLQAGDSDEGVRDYLVARYGQFVLLRPRLEWETIALWGTPAVLLVFGGVLAWSARRRARAMETEPLSEAEERELRRLTAED 151          
BLAST of mRNA_P-wetherbeei_contig10514.1.1 vs. uniprot
Match: A0A1Y5REW9_9PROT (Cytochrome c-type biogenesis protein n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5REW9_9PROT)

HSP 1 Score: 97.8 bits (242), Expect = 7.550e-24
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 LAGDLRRIVRERVAAGDTDSQVRAHLVARYGDWVLMRPPFKLSTLVLWAGPPVLLVLGGIALWAGQRRRE-----APVLQPLTEAEQAKLREITA 270
            LA DLR +VRER+AAGD+D QVR ++VARYGDWVL+ PPFKL T +LW GP +LL+LG + +W   RR       A    PL+  E  KL  + A
Sbjct:   63 LARDLRILVRERIAAGDSDEQVRDYVVARYGDWVLLNPPFKLGTYLLWIGPFILLILGAVGVWIFLRRARVRYTAAAAPTPLSGEETEKLDRLLA 157          
BLAST of mRNA_P-wetherbeei_contig10514.1.1 vs. uniprot
Match: UPI00131C003E (cytochrome c-type biogenesis protein CcmH n=1 Tax=Methylocapsa sp. S129 TaxID=1641869 RepID=UPI00131C003E)

HSP 1 Score: 97.1 bits (240), Expect = 1.110e-23
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 LAGDLRRIVRERVAAGDTDSQVRAHLVARYGDWVLMRPPFKLSTLVLWAGPPVLLVLGGIALWAGQRRRE--APVLQPLTEAEQAKLRE 261
            LA D+R ++R+R+A G+++  VR  LV+RYGD++L+ PPFK  TL+LWAG P+ L+LG +ALW   RRRE  AP L P  EA  A + E
Sbjct:   61 LARDIRLLIRDRIAKGESNEAVRGFLVSRYGDFILLNPPFKPETLLLWAGAPLALILGALALWRAARRREEAAPALSPAEEARLAAIAE 149          
BLAST of mRNA_P-wetherbeei_contig10514.1.1 vs. uniprot
Match: A0A1Y5E3V7_9PROT (Cytochrome c-type biogenesis protein n=1 Tax=Alphaproteobacteria bacterium 46_93_T64 TaxID=1856292 RepID=A0A1Y5E3V7_9PROT)

HSP 1 Score: 97.1 bits (240), Expect = 1.330e-23
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 LAGDLRRIVRERVAAGDTDSQVRAHLVARYGDWVLMRPPFKLSTLVLWAGPPVLLVLGGIALWAGQRRREAP-----VLQPLTEAEQAKLREITAPD 276
            LA DLR IVRER+ AGDTD QV+ +LV+RYGDWVL+ PPFK+ TLVLW  P ++L+ GG  +    RR+ A      V +PLT+AE+    ++ A D
Sbjct:   58 LARDLRAIVRERILAGDTDDQVQNYLVSRYGDWVLLNPPFKMRTLVLWLSPMLVLLFGGFLVVRFLRRKSAAPTENSVSRPLTDAEKKTFDQLMAED 154          
BLAST of mRNA_P-wetherbeei_contig10514.1.1 vs. uniprot
Match: A0A512N8J0_9HYPH (Cytochrome c-type biogenesis protein n=1 Tax=Reyranella soli TaxID=1230389 RepID=A0A512N8J0_9HYPH)

HSP 1 Score: 97.1 bits (240), Expect = 1.400e-23
Identity = 49/86 (56.98%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 LAGDLRRIVRERVAAGDTDSQVRAHLVARYGDWVLMRPPFKLSTLVLWAGPPVLLVLGGIALW-AGQRRREAPVLQPLTEAEQAKL 255
            +A D+RR VR+R+ AGDTD QV  ++VARYGD+VL++PPFK  TLVLW G P +L+LG I LW A  RR  A    PL++AE+A+L
Sbjct:   60 VAHDIRRAVRQRLVAGDTDRQVLDYMVARYGDYVLLKPPFKARTLVLWLGTPAVLLLGMIGLWFAAGRRSTAVGSAPLSDAERARL 145          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10514.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TS73_9PROT8.070e-3465.96Cytochrome c-type biogenesis protein n=1 Tax=Alpha... [more]
A0A353LQM4_9PROT2.970e-2656.67Cytochrome c-type biogenesis protein n=3 Tax=Alpha... [more]
A0A2S9QFG3_9HYPH3.990e-2653.26Cytochrome c-type biogenesis protein n=4 Tax=Labry... [more]
A0A521W052_9HYPH4.800e-2552.58Cytochrome c-type biogenesis protein n=1 Tax=Xanth... [more]
UPI00146B9DE17.610e-2557.30cytochrome c-type biogenesis protein CcmH n=1 Tax=... [more]
UPI000780F5A41.840e-2452.17cytochrome c-type biogenesis protein CcmH n=1 Tax=... [more]
A0A1Y5REW9_9PROT7.550e-2452.63Cytochrome c-type biogenesis protein n=1 Tax=Ocean... [more]
UPI00131C003E1.110e-2351.69cytochrome c-type biogenesis protein CcmH n=1 Tax=... [more]
A0A1Y5E3V7_9PROT1.330e-2351.55Cytochrome c-type biogenesis protein n=1 Tax=Alpha... [more]
A0A512N8J0_9HYPH1.400e-2356.98Cytochrome c-type biogenesis protein n=1 Tax=Reyra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10514contigP-wetherbeei_contig10514:5..283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1120983.KB894577_gene3623
Preferred namecycL
PFAMsCcmH
Model size279
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02200
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.15e-23
EggNOG OGsCOG3088@1|root,COG3088@2|Bacteria,1MZZ5@1224|Proteobacteria,2U96P@28211|Alphaproteobacteria,1JPBC@119043|Rhodobiaceae
DescriptionCytochrome C biogenesis protein
Cds size279
COG categoryO
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185873.3971975-CDS-P-wetherbeei_contig10514:4..2831683185873.3971975-CDS-P-wetherbeei_contig10514:4..283Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10514 5..283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10514.1.1prot_P-wetherbeei_contig10514.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10514 5..283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10514.1.1

>prot_P-wetherbeei_contig10514.1.1 ID=prot_P-wetherbeei_contig10514.1.1|Name=mRNA_P-wetherbeei_contig10514.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
LAGDLRRIVRERVAAGDTDSQVRAHLVARYGDWVLMRPPFKLSTLVLWAG
PPVLLVLGGIALWAGQRRREAPVLQPLTEAEQAKLREITAPD*
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mRNA from alignment at P-wetherbeei_contig10514:5..283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10514.1.1 ID=mRNA_P-wetherbeei_contig10514.1.1|Name=mRNA_P-wetherbeei_contig10514.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig10514:5..283+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGCCGGGGATTTGCGCCGCATTGTGCGCGAGCGGGTGGCGGCGGGCGA TACGGACAGTCAGGTGCGCGCGCATCTGGTGGCCCGCTATGGCGACTGGG TGTTGATGCGCCCGCCCTTCAAGCTTTCGACGCTGGTCCTGTGGGCAGGG CCGCCAGTGCTGCTGGTGTTGGGGGGCATTGCCCTGTGGGCAGGCCAGCG CCGCCGGGAAGCCCCGGTTTTACAGCCCCTGACCGAGGCCGAACAGGCCA AATTGCGTGAAATAACCGCGCCTGATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10514:5..283+

>mRNA_P-wetherbeei_contig10514.1.1 ID=mRNA_P-wetherbeei_contig10514.1.1|Name=mRNA_P-wetherbeei_contig10514.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig10514:5..283+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGCCGGGGATTTGCGCCGCATTGTGCGCGAGCGGGTGGCGGCGGGCGA
TACGGACAGTCAGGTGCGCGCGCATCTGGTGGCCCGCTATGGCGACTGGG
TGTTGATGCGCCCGCCCTTCAAGCTTTCGACGCTGGTCCTGTGGGCAGGG
CCGCCAGTGCTGCTGGTGTTGGGGGGCATTGCCCTGTGGGCAGGCCAGCG
CCGCCGGGAAGCCCCGGTTTTACAGCCCCTGACCGAGGCCGAACAGGCCA
AATTGCGTGAAATAACCGCGCCTGATTAA
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