mRNA_P-wetherbeei_contig1050.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1050.4.1
Unique NamemRNA_P-wetherbeei_contig1050.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1050.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1050contigP-wetherbeei_contig1050:6118..8033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1041
Hectar predicted targeting categoryother localisation
Exons4
Cds size1032
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185872.5537612-UTR-P-wetherbeei_contig1050:6117..61241683185872.5537612-UTR-P-wetherbeei_contig1050:6117..6124Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1050 6118..6124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185872.5631301-CDS-P-wetherbeei_contig1050:6124..62821683185872.5631301-CDS-P-wetherbeei_contig1050:6124..6282Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1050 6125..6282 +
1683185872.5723352-CDS-P-wetherbeei_contig1050:6484..67041683185872.5723352-CDS-P-wetherbeei_contig1050:6484..6704Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1050 6485..6704 +
1683185872.581191-CDS-P-wetherbeei_contig1050:7083..72331683185872.581191-CDS-P-wetherbeei_contig1050:7083..7233Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1050 7084..7233 +
1683185872.5896804-CDS-P-wetherbeei_contig1050:7529..80331683185872.5896804-CDS-P-wetherbeei_contig1050:7529..8033Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1050 7530..8033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1050.4.1prot_P-wetherbeei_contig1050.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1050 6125..8033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1050.4.1

>prot_P-wetherbeei_contig1050.4.1 ID=prot_P-wetherbeei_contig1050.4.1|Name=mRNA_P-wetherbeei_contig1050.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=344bp
MEDFAALVRRVSASSNDAVATAAANAWRAAAGRLPGKRSSAERRGACIML
GFDKAKVRMKKDAPSAISKACLCKEDDLLREYAKLRRTFAAGGSFAIPTV
EVSQLALWLGFDIFADQAEALLKTFKERRQPLRVSSRSSDDLEADADGHF
FRVAAVCVAALSGGGRVDLNRIAGQQVHCPRDVLEKHCLVLIEACGIHND
PGVQNVFAARLKKMRPAAGNIRGSGGRGGDGGSQNRCGKSEVLATAATAA
ERSRGAGAAALAQAISPPPAAAAGSASLKRPRLAGVTFAESVAGSASGGG
GSIGPGTGAGNNSGGSSSGEANGDGDALITGGPSAAKRCNAAAP
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mRNA from alignment at P-wetherbeei_contig1050:6118..8033+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1050.4.1 ID=mRNA_P-wetherbeei_contig1050.4.1|Name=mRNA_P-wetherbeei_contig1050.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1916bp|location=Sequence derived from alignment at P-wetherbeei_contig1050:6118..8033+ (Phaeothamnion wetherbeei SAG_119_79)
TTTGCGAATGGAGGACTTCGCGGCGCTAGTACGGCGGGTCTCCGCCTCCT
CCAACGATGCGGTTGCCACGGCGGCGGCAAATGCATGGCGCGCGGCCGCG
GGGAGGCTCCCGGGCAAGAGGTCTTCTGCAGAGCGAAGGGGAGCTTGCAT
AATGCTGGGATTCGAGTAAGTGTGAATGGGTAAAGGCTTGCTTTTTTACA
CACCGTACCGCCCCTGTAATCGGCCCGAGCAGCAATCCGTTTCTTTCTTC
TTGTAAAACATGCAAAAGCGGAAGAGGGAAGAAAAGAGTGAAGACGCTTG
ATCTTCACCACTAAGCGCTGCAACGAACCACAATGATGCCGATCTCCGAC
GCTGCCACATCAAACAGCAAGGCGAAAGTGCGAATGAAGAAGGACGCGCC
CTCGGCCATCTCGAAGGCCTGCCTCTGCAAGGAGGATGACCTTCTGCGCG
AGTATGCCAAGCTGCGGCGGACCTTCGCCGCTGGCGGCTCGTTTGCCATA
CCCACCGTCGAAGTCTCCCAGCTTGCCTTGTGGCTCGGCTTCGATATCTT
CGCCGACCAAGCCGAGGCGCTTCTCAAGACCTTCAAGGTAGAGTTAAAAG
TGGCTGCGCGTCTCTGCTGAGACACGTTCCGGTGACACTCGAAGGCGGCA
CCGGAAAGTATTCCGTTTTGCAAAAGATGTTGAGAGCTCTCGTCAGCTTG
GGTCATCGATTGCTTGCTCTCCTGGCCGCCTCTCCCCAAATCCGTTTTTG
AGCCTTACCCCTAAGCGCCGTGTCTGGTGAAGGGTTTTGCTATCACGGCG
CATTCTCCGTTTTGGCGAAGGATTTTCCTATCATGGCGCATCCTCCGTTT
TAATCCAACCTCCCACGCCTCAATTTTGCGGCTTTGATCCTTTGTCTATT
GTTGTTGAAACCGGTGCTAAAAACGCCGAACATACTAATGTCACGCGGCG
GCGGCGGCAAAAGCAGGAGCGGCGGCAGCCGCTGCGCGTCTCCTCGCGGT
CGTCGGACGACCTCGAAGCGGATGCGGATGGACATTTCTTCCGTGTCGCC
GCCGTTTGTGTCGCCGCCCTCAGCGGCGGGGGCCGGGTCGACCTGAATCG
CATCGCCGGCCAGCAGGTACTGACGAAACCAAATGTGGAGAAGGCGTGGT
TTTGTCCAAAAACCCGTTCAGTTAGCGCGCTCGGGATCTAAGGGAGGTTC
TTCTCCCATCGTTCACATTCCGCAAAGACGTTCAGTCCTGTATGCTCAGC
GACGCTGTGCTTCTCTCCTTTGACTTCTTGTGCTTTGTAGGTTTGTGGGA
TGTGGCCTGGGAGAGTATTTGCAACCTTCTACCACTGCACGACCAAACAG
TCAAAGTTAACCAAGCGCGGACATTTGTCTTTGTTCACATTGCGCCTGAA
TGCCGCGGACAGGTGCATTGCCCTCGGGACGTCCTGGAGAAGCACTGCCT
CGTCCTAATCGAGGCATGTGGCATCCACAACGACCCCGGCGTGCAAAATG
TGTTTGCCGCACGTCTCAAGAAGATGCGGCCCGCCGCAGGCAACATAAGA
GGTAGCGGTGGCCGCGGCGGCGACGGCGGATCCCAAAACCGCTGTGGGAA
GTCGGAGGTCCTGGCAACGGCGGCGACGGCAGCGGAACGGTCGCGGGGCG
CGGGCGCGGCTGCGCTGGCGCAGGCGATATCGCCGCCGCCGGCGGCGGCG
GCGGGCAGTGCATCCCTCAAGCGACCACGGCTCGCCGGCGTCACCTTCGC
AGAATCTGTGGCGGGCAGTGCCAGCGGTGGGGGCGGCAGCATTGGCCCCG
GCACCGGAGCTGGTAACAACAGCGGCGGTAGCAGCAGCGGCGAAGCCAAC
GGCGACGGCGATGCGCTGATCACGGGAGGCCCAAGCGCAGCCAAGAGATG
CAATGCGGCTGCTCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1050:6118..8033+

>mRNA_P-wetherbeei_contig1050.4.1 ID=mRNA_P-wetherbeei_contig1050.4.1|Name=mRNA_P-wetherbeei_contig1050.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1032bp|location=Sequence derived from alignment at P-wetherbeei_contig1050:6118..8033+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGACTTCGCGGCGCTAGTACGGCGGGTCTCCGCCTCCTCCAACGA
TGCGGTTGCCACGGCGGCGGCAAATGCATGGCGCGCGGCCGCGGGGAGGC
TCCCGGGCAAGAGGTCTTCTGCAGAGCGAAGGGGAGCTTGCATAATGCTG
GGATTCGACAAGGCGAAAGTGCGAATGAAGAAGGACGCGCCCTCGGCCAT
CTCGAAGGCCTGCCTCTGCAAGGAGGATGACCTTCTGCGCGAGTATGCCA
AGCTGCGGCGGACCTTCGCCGCTGGCGGCTCGTTTGCCATACCCACCGTC
GAAGTCTCCCAGCTTGCCTTGTGGCTCGGCTTCGATATCTTCGCCGACCA
AGCCGAGGCGCTTCTCAAGACCTTCAAGGAGCGGCGGCAGCCGCTGCGCG
TCTCCTCGCGGTCGTCGGACGACCTCGAAGCGGATGCGGATGGACATTTC
TTCCGTGTCGCCGCCGTTTGTGTCGCCGCCCTCAGCGGCGGGGGCCGGGT
CGACCTGAATCGCATCGCCGGCCAGCAGGTGCATTGCCCTCGGGACGTCC
TGGAGAAGCACTGCCTCGTCCTAATCGAGGCATGTGGCATCCACAACGAC
CCCGGCGTGCAAAATGTGTTTGCCGCACGTCTCAAGAAGATGCGGCCCGC
CGCAGGCAACATAAGAGGTAGCGGTGGCCGCGGCGGCGACGGCGGATCCC
AAAACCGCTGTGGGAAGTCGGAGGTCCTGGCAACGGCGGCGACGGCAGCG
GAACGGTCGCGGGGCGCGGGCGCGGCTGCGCTGGCGCAGGCGATATCGCC
GCCGCCGGCGGCGGCGGCGGGCAGTGCATCCCTCAAGCGACCACGGCTCG
CCGGCGTCACCTTCGCAGAATCTGTGGCGGGCAGTGCCAGCGGTGGGGGC
GGCAGCATTGGCCCCGGCACCGGAGCTGGTAACAACAGCGGCGGTAGCAG
CAGCGGCGAAGCCAACGGCGACGGCGATGCGCTGATCACGGGAGGCCCAA
GCGCAGCCAAGAGATGCAATGCGGCTGCTCCA
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