mRNA_P-wetherbeei_contig105.9.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig105.9.1
Unique NamemRNA_P-wetherbeei_contig105.9.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig105.9.1 vs. uniprot
Match: A0A353LNJ4_9PROT (Coenzyme F420-0:L-glutamate ligase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LNJ4_9PROT)

HSP 1 Score: 314 bits (805), Expect = 2.540e-105
Identity = 160/254 (62.99%), Postives = 200/254 (78.74%), Query Frame = 1
Query:    1 SITLGAIPDIPLIAPGDPLAKIIYDRAIAAGMALQSGDVLVIAQKIVSKSENRYADLRSITPSARAREIAAVVEKDPRFVEAVLQEASDIVRYQKNVLIVAHRIGVVMANAGIDQSNIDHADGAEKILLLPQDPDASAERLRTELLALSGADVAIIINDSVGRAWRNGITGIAIGVAGLTALQDLRGEPDLFGRRLEVTEVATADELAAAGSLLQGQGSQGQPVVLIRGFVPPKADHHKPATALVRDKRIDMFR 762
            +++L  +P IPLIAPGD LA I+     AAG++   GDVLV+AQKIVSK+E RYADL ++ PS RA  +A  V+KDPR VE +L E++++VR++  VLIVAHRIGVVMANAGID SNI H +G E++LLLP+DPDASAER+R E+ A  GA++A++I DSVGRAWRNG  GIAIGVAGL +L DLRGE DLFGR LEV+EV TAD +A+A  LL G+G++G P VL+RGFVPP+    + A ALVRDKRIDMFR
Sbjct:    4 ALSLTGLPGIPLIAPGDDLAAILGAGMDAAGLSFAPGDVLVLAQKIVSKAEGRYADLAAVVPSPRAVALATEVDKDPRLVELILSESTEVVRHRPGVLIVAHRIGVVMANAGIDHSNIPHPEGTEQVLLLPEDPDASAERMRREIAARFGAEIAVVICDSVGRAWRNGTVGIAIGVAGLASLIDLRGERDLFGRVLEVSEVGTADAIASAAGLLMGEGAEGVPAVLMRGFVPPRPGPARDAAALVRDKRIDMFR 257          
BLAST of mRNA_P-wetherbeei_contig105.9.1 vs. uniprot
Match: A0A3A0F6F6_9PROT (Coenzyme F420-0:L-glutamate ligase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3A0F6F6_9PROT)

HSP 1 Score: 295 bits (756), Expect = 6.620e-98
Identity = 149/257 (57.98%), Postives = 194/257 (75.49%), Query Frame = 1
Query:    1 SITLGAIPDIPLIAPGDPLAKIIYDRAIAAGMALQSGDVLVIAQKIVSKSENRYADLRSITPSARAREIAAVVEKDPRFVEAVLQEASDIVRYQKNVLIVAHRIGVVMANAGIDQSNIDHADGAEKILLLPQDPDASAERLRTELLALSGADVAIIINDSVGRAWRNGITGIAIGVAGLTALQDLRGEPDLFGRRLEVTEVATADELAAAGSLLQGQGSQGQPVVLIRGFV---PPKADHHKPATALVRDKRIDMFR 762
            SIT  A+P +PL+ PGD L  +I +     G+A+ +GDV V+AQKIVSK+ENRY DL  +TPSARA E+A VV KDPR +E VL E++++VR ++NV+IVAHR+G VMANAGID+SNI HA+G  ++LLLP+DPDAS+ERLR  L    G DV +IINDS GR WRNG+ G+AIG AG+ +L+ + GEPDLF R + +TE+A ADELAAA SL+ GQG++GQPVV +RGF    PP+     PA+ALVR +  D+FR
Sbjct:    4 SITYTALPGLPLVEPGDDLVAMIVEGVRRTGLAVAAGDVFVVAQKIVSKAENRYVDLADVTPSARALELAGVVGKDPRHIEVVLSESTEVVRCRQNVMIVAHRLGFVMANAGIDESNIAHAEGKARVLLLPKDPDASSERLRQGLRGAFGVDVGVIINDSFGRPWRNGVVGVAIGSAGVASLRSMIGEPDLFDRAMRITEIAVADELAAAASLVMGQGAEGQPVVHVRGFASVAPPQ-----PASALVRPREQDLFR 255          
BLAST of mRNA_P-wetherbeei_contig105.9.1 vs. uniprot
Match: A0A2E9Y5A1_9PROT (Coenzyme F420-0:L-glutamate ligase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E9Y5A1_9PROT)

HSP 1 Score: 283 bits (724), Expect = 4.950e-93
Identity = 146/254 (57.48%), Postives = 188/254 (74.02%), Query Frame = 1
Query:    1 SITLGAIPDIPLIAPGDPLAKIIYDRAIAAGMALQSGDVLVIAQKIVSKSENRYADLRSITPSARAREIAAVVEKDPRFVEAVLQEASDIVRYQKNVLIVAHRIGVVMANAGIDQSNIDHADGAEKILLLPQDPDASAERLRTELLALSGADVAIIINDSVGRAWRNGITGIAIGVAGLTALQDLRGEPDLFGRRLEVTEVATADELAAAGSLLQGQGSQGQPVVLIRGFVPPKADHHKPATALVRDKRIDMFR 762
            S+ L  +PD+PL+ PGD LA +I D    AG  LQ GD+LV+AQKIVSK+ N   DLR +TP+A A  +A  V+KDPR V+ +L E+ D+V  +  VLIVAHRIG+VMANAGID SN++ ADG+E +LLLP+DPDA    LR  +L   G ++++IINDSVGRAWR G  G+AIG AG+ AL DLRG+PDLFGR L V+EV  ADEL++A S+LQGQG++G+PVV+IRG   P +D  + A ALVR K +DMFR
Sbjct:    5 SMQLFTLPDMPLVKPGDDLAALIGDGLSRAGEKLQDGDILVLAQKIVSKASNCIVDLRDVTPTAEAEALAVEVDKDPRQVQLILDESVDVVGKRPGVLIVAHRIGIVMANAGIDASNVEQADGSEHVLLLPKDPDADCRALRQTMLERHGVEISVIINDSVGRAWRQGTMGLAIGSAGIPALWDLRGDPDLFGRELLVSEVGLADELSSAASILQGQGNEGRPVVVIRGMSFPASD--QGADALVRPKEMDMFR 256          
BLAST of mRNA_P-wetherbeei_contig105.9.1 vs. uniprot
Match: B6JBS3_AFIC5 (F420-0:gamma-glutamyl ligase CofE n=1 Tax=Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) TaxID=504832 RepID=B6JBS3_AFIC5)

HSP 1 Score: 281 bits (719), Expect = 2.750e-92
Identity = 143/254 (56.30%), Postives = 182/254 (71.65%), Query Frame = 1
Query:    1 SITLGAIPDIPLIAPGDPLAKIIYDRAIAAGMALQSGDVLVIAQKIVSKSENRYADLRSITPSARAREIAAVVEKDPRFVEAVLQEASDIVRYQKNVLIVAHRIGVVMANAGIDQSNIDHADGAEKILLLPQDPDASAERLRTELLALSGADVAIIINDSVGRAWRNGITGIAIGVAGLTALQDLRGEPDLFGRRLEVTEVATADELAAAGSLLQGQGSQGQPVVLIRGFVPPKADHHKPATALVRDKRIDMFR 762
            S+T  A+P +PL+ PGD L  II +    A + +  GD+ VIAQKIVSK+ENRY DL  I PSA+A E+A  V KDPR +E VL E++++VR+++NV+IVAHR+G VMANAGID+SNI H DG  ++LLLP+DPDAS E LR +L    G  + +IINDS GR WRNG+ G+AIG AG+ +LQ + G PDLF R + VTE+A ADELAAA SL+ GQ ++G PVV IRGF    A  H PA+ L R K  DMFR
Sbjct:    4 SVTYTALPGLPLVEPGDDLGNIIAEGVRRAEIVVADGDIFVIAQKIVSKAENRYVDLNEIVPSAQALELAKTVGKDPRHIEVVLSESTEVVRFRQNVMIVAHRLGFVMANAGIDESNIAHDDGKARVLLLPKDPDASGEMLRQQLQRTFGVKIGVIINDSFGRPWRNGVVGVAIGSAGIPSLQSMIGAPDLFNRAMRVTEIAIADELAAAASLVMGQAAEGLPVVHIRGFHSEAA--HSPASVLARPKAQDMFR 255          
BLAST of mRNA_P-wetherbeei_contig105.9.1 vs. uniprot
Match: A0A4U6BNT4_9BRAD (Coenzyme F420-0:L-glutamate ligase n=1 Tax=Afipia massiliensis TaxID=211460 RepID=A0A4U6BNT4_9BRAD)

HSP 1 Score: 281 bits (719), Expect = 2.750e-92
Identity = 135/254 (53.15%), Postives = 189/254 (74.41%), Query Frame = 1
Query:    1 SITLGAIPDIPLIAPGDPLAKIIYDRAIAAGMALQSGDVLVIAQKIVSKSENRYADLRSITPSARAREIAAVVEKDPRFVEAVLQEASDIVRYQKNVLIVAHRIGVVMANAGIDQSNIDHADGAEKILLLPQDPDASAERLRTELLALSGADVAIIINDSVGRAWRNGITGIAIGVAGLTALQDLRGEPDLFGRRLEVTEVATADELAAAGSLLQGQGSQGQPVVLIRGFVPPKADHHKPATALVRDKRIDMFR 762
            S+T  A+P IPLIAPGD LA ++ +    A + L SGD++V+AQKIVSK+ENRY  L+ + PS +AR +A  + KDPR++E VL E+ ++VR++ N++IVAHR+G VMANAGIDQSNI+H +G E++LLLP++PDA+A  L+T      G +V ++INDS GR WRNG+ G+A+G AGL +L D+ G PD+FGR +++TE+A ADE+AA  SLL GQ ++G PVV++RG     A   +PA+ALVR +  DMFR
Sbjct:    4 SVTYHAVPGIPLIAPGDDLAALVVESLNTAQLPLISGDIVVVAQKIVSKAENRYVALKDVVPSEKARTLAGQIGKDPRYIEVVLSESEEVVRHRPNIMIVAHRLGFVMANAGIDQSNIEHVNGEERVLLLPRNPDAAATELKTRFDTAFGVNVGVVINDSFGRPWRNGVVGVALGAAGLPSLLDMIGAPDMFGRPMQMTEIAVADEIAAGASLLMGQAAEGLPVVVVRGLAFDAAS--RPASALVRPRERDMFR 255          
BLAST of mRNA_P-wetherbeei_contig105.9.1 vs. uniprot
Match: A0A1M5YBT1_9BRAD (Coenzyme F420-0 gamma-glutamyl ligase n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5YBT1_9BRAD)

HSP 1 Score: 280 bits (717), Expect = 5.520e-92
Identity = 143/254 (56.30%), Postives = 187/254 (73.62%), Query Frame = 1
Query:    1 SITLGAIPDIPLIAPGDPLAKIIYDRAIAAGMALQSGDVLVIAQKIVSKSENRYADLRSITPSARAREIAAVVEKDPRFVEAVLQEASDIVRYQKNVLIVAHRIGVVMANAGIDQSNIDHADGAEKILLLPQDPDASAERLRTELLALSGADVAIIINDSVGRAWRNGITGIAIGVAGLTALQDLRGEPDLFGRRLEVTEVATADELAAAGSLLQGQGSQGQPVVLIRGFVPPKADHHKPATALVRDKRIDMFR 762
            SIT  A+P+IPL+ PGD +  II      AG+ LQ GDV+VIAQKIVSKSENRY DL  I PS +A+E+A V  KD R +EAVL E+S+++R +KNV+IVAHR+G VMANAGID+SNI H +G+E++LLLP DPD +   ++  L       V +IINDS GRAWRNG+ G+A+G AG+++LQ+L G PDLFGR ++VTEVA  DELAAA SL+ GQG++G P+V +RGF     ++   A AL+R K +DMFR
Sbjct:    4 SITYTALPNIPLVQPGDDVCAIIKVGLADAGITLQDGDVIVIAQKIVSKSENRYVDLGQIVPSVKAQELAEVTGKDARHLEAVLSESSEVLRTRKNVIIVAHRLGFVMANAGIDESNIAHGEGSERVLLLPVDPDKTCREIKATLDRSFAVSVGVIINDSFGRAWRNGVVGVALGAAGISSLQNLIGSPDLFGRLMKVTEVAVGDELAAAASLVMGQGAEGTPIVHVRGFRNRAPEND--AAALIRPKNMDMFR 255          
BLAST of mRNA_P-wetherbeei_contig105.9.1 vs. uniprot
Match: A0A503WFN3_9HYPH (Coenzyme F420-0:L-glutamate ligase n=1 Tax=Mesorhizobium sp. B2-2-2 TaxID=2589964 RepID=A0A503WFN3_9HYPH)

HSP 1 Score: 279 bits (713), Expect = 2.310e-91
Identity = 144/254 (56.69%), Postives = 191/254 (75.20%), Query Frame = 1
Query:    1 SITLGAIPDIPLIAPGDPLAKIIYDRAIAAGMALQSGDVLVIAQKIVSKSENRYADLRSITPSARAREIAAVVEKDPRFVEAVLQEASDIVRYQKNVLIVAHRIGVVMANAGIDQSNIDHADGAEKILLLPQDPDASAERLRTELLALSGADVAIIINDSVGRAWRNGITGIAIGVAGLTALQDLRGEPDLFGRRLEVTEVATADELAAAGSLLQGQGSQGQPVVLIRGFVPPKADHHKPATALVRDKRIDMFR 762
            +++L A+P++PLIAPGD LA II  R   +G+ LQ GD++V+AQKIVSK+E+RY DL S+TPS  AR++AA   KDPR VE VL EA +IV+   +V++VAHR+G VMANAG+D+SNIDH  GA ++LLLP+DPD SA  LR EL A+ G    +IINDS GR WRNG+ G+A+G AG+ +L D  G  DLFGR L+VTE+ATADELA+A SLL GQ ++G+PV++IR +    A   +PA+AL+R +  DMFR
Sbjct:    6 AMSLHAVPEMPLIAPGDDLAAIIGARLRDSGIGLQDGDIVVLAQKIVSKAEDRYIDLTSVTPSQAARDLAAKTGKDPRHVEVVLSEADEIVKTGPHVIVVAHRLGFVMANAGVDESNIDHGGGA-RVLLLPKDPDQSAAGLRQELEAMFGVSCGVIINDSFGRPWRNGVVGVALGAAGVPSLIDRVGAADLFGRELKVTEIATADELASAASLLMGQANEGRPVIVIRNY--RSAAPQRPASALLRSRERDMFR 256          
BLAST of mRNA_P-wetherbeei_contig105.9.1 vs. uniprot
Match: UPI00190A2B68 (coenzyme F420-0:L-glutamate ligase n=1 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=UPI00190A2B68)

HSP 1 Score: 276 bits (707), Expect = 1.820e-90
Identity = 142/253 (56.13%), Postives = 181/253 (71.54%), Query Frame = 1
Query:    4 ITLGAIPDIPLIAPGDPLAKIIYDRAIAAGMALQSGDVLVIAQKIVSKSENRYADLRSITPSARAREIAAVVEKDPRFVEAVLQEASDIVRYQKNVLIVAHRIGVVMANAGIDQSNIDHADGAEKILLLPQDPDASAERLRTELLALSGADVAIIINDSVGRAWRNGITGIAIGVAGLTALQDLRGEPDLFGRRLEVTEVATADELAAAGSLLQGQGSQGQPVVLIRGFVPPKADHHKPATALVRDKRIDMFR 762
            +TL AI DIP+I PGD +A II  R  + G+    GDV+VIAQKIVSK+E RY +L  I P  +A E+A    KDPR VE VL E++ ++RY+ NVLIVAHR+G VMANAGID+SNIDH+ G   +LLLP DPD S  +++  + A     + +IINDS GR WRNG+ G+A+G AG+ +++ L G PDL+GRRL++TEVA ADELAAA SL+ GQ S+G PVV IRGF  P    +KPA ALVR K +DMFR
Sbjct:    5 LTLSAISDIPMIEPGDDVAAIIVTRLRSDGIIPNDGDVIVIAQKIVSKAEGRYVNLADIAPGPKALELAKATGKDPRHVEVVLSESTAVLRYRTNVLIVAHRLGFVMANAGIDESNIDHSRGDPLVLLLPSDPDGSCAKIKQTIDAEFKVSIGVIINDSFGRPWRNGVVGVALGCAGVPSIESLVGRPDLYGRRLQITEVAVADELAAAASLMMGQASEGMPVVHIRGFDRPA--ENKPARALVRPKELDMFR 255          
BLAST of mRNA_P-wetherbeei_contig105.9.1 vs. uniprot
Match: A0A4Q0QAF3_9BRAD (Coenzyme F420-0:L-glutamate ligase n=4 Tax=Bradyrhizobium TaxID=374 RepID=A0A4Q0QAF3_9BRAD)

HSP 1 Score: 276 bits (705), Expect = 3.540e-90
Identity = 143/254 (56.30%), Postives = 189/254 (74.41%), Query Frame = 1
Query:    1 SITLGAIPDIPLIAPGDPLAKIIYDRAIAAGMALQSGDVLVIAQKIVSKSENRYADLRSITPSARAREIAAVVEKDPRFVEAVLQEASDIVRYQKNVLIVAHRIGVVMANAGIDQSNIDHADGAEKILLLPQDPDASAERLRTELLALSGADVAIIINDSVGRAWRNGITGIAIGVAGLTALQDLRGEPDLFGRRLEVTEVATADELAAAGSLLQGQGSQGQPVVLIRGFVPPKADHHKPATALVRDKRIDMFR 762
            SIT  A+P IPL+ PGD L  +I D   A G+A+ SGD+ VIAQKIVSK+ENRY  L  ++PS RA E+A  V KDPR +E VL E+++++R ++N++IVAHR+G VMANAGID+SNI+  D   ++LLLP+DPD S +RL+T L    G DV +IINDS GR WRNG+ G+A+G AG+ ALQ + G+PDLFGR ++VTE+A ADELAAA SLL GQ ++GQPV+ +RGF   +A  +  A+AL+R K  DMFR
Sbjct:    4 SITYTALPGIPLVGPGDDLVDVIVDGVRAGGIAVASGDIFVIAQKIVSKAENRYVYLDDVSPSDRALELAETVGKDPRHIEVVLSESTEVLRARQNIIIVAHRLGFVMANAGIDESNIEQ-DRGHRVLLLPEDPDTSCQRLKTGLDRQFGVDVGVIINDSFGRPWRNGVVGVALGSAGIPALQSMIGKPDLFGRPMQVTEIALADELAAAASLLMGQAAEGQPVIHVRGF-SSRAPINS-ASALMRAKERDMFR 254          
BLAST of mRNA_P-wetherbeei_contig105.9.1 vs. uniprot
Match: A0A3S0H3I7_9BRAD (Coenzyme F420-0:L-glutamate ligase n=5 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A3S0H3I7_9BRAD)

HSP 1 Score: 275 bits (704), Expect = 5.190e-90
Identity = 138/254 (54.33%), Postives = 188/254 (74.02%), Query Frame = 1
Query:    1 SITLGAIPDIPLIAPGDPLAKIIYDRAIAAGMALQSGDVLVIAQKIVSKSENRYADLRSITPSARAREIAAVVEKDPRFVEAVLQEASDIVRYQKNVLIVAHRIGVVMANAGIDQSNIDHADGAEKILLLPQDPDASAERLRTELLALSGADVAIIINDSVGRAWRNGITGIAIGVAGLTALQDLRGEPDLFGRRLEVTEVATADELAAAGSLLQGQGSQGQPVVLIRGFVPPKADHHKPATALVRDKRIDMFR 762
            S+T  A+P IPLIAPGD LA +I +    A ++L SGD++VIAQKIVSK+ENRY  L+ + PS +AR +A  V KD R++E VL E+ ++VR++ NV+IVAHR+G VMANAGIDQSNI+H +G E++LLLP+DPD  A +L+    A   A V +IINDS GR WRNG+ G+A+G AGL +L D+ G+PD+FGR++++TE+A ADE+AA  SLL GQ ++G PVV++RG     A   + A+ALVR +  DMFR
Sbjct:    4 SVTYHAVPGIPLIAPGDDLAALIVESLNKAELSLLSGDIVVIAQKIVSKAENRYVALKDVIPSDKARMLADQVGKDARYIEVVLSESDEVVRHRPNVMIVAHRLGFVMANAGIDQSNIEHINGEERVLLLPRDPDGVAVQLKARFDAAFSAKVGVIINDSFGRPWRNGVVGVALGAAGLPSLLDMIGQPDMFGRKMQMTEIAVADEIAAGASLLMGQAAEGLPVVMVRGLTFDAAP--RSASALVRPRERDMFR 255          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig105.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A353LNJ4_9PROT2.540e-10562.99Coenzyme F420-0:L-glutamate ligase n=1 Tax=Alphapr... [more]
A0A3A0F6F6_9PROT6.620e-9857.98Coenzyme F420-0:L-glutamate ligase n=1 Tax=Proteob... [more]
A0A2E9Y5A1_9PROT4.950e-9357.48Coenzyme F420-0:L-glutamate ligase n=1 Tax=Rhodosp... [more]
B6JBS3_AFIC52.750e-9256.30F420-0:gamma-glutamyl ligase CofE n=1 Tax=Afipia c... [more]
A0A4U6BNT4_9BRAD2.750e-9253.15Coenzyme F420-0:L-glutamate ligase n=1 Tax=Afipia ... [more]
A0A1M5YBT1_9BRAD5.520e-9256.30Coenzyme F420-0 gamma-glutamyl ligase n=1 Tax=Brad... [more]
A0A503WFN3_9HYPH2.310e-9156.69Coenzyme F420-0:L-glutamate ligase n=1 Tax=Mesorhi... [more]
UPI00190A2B681.820e-9056.13coenzyme F420-0:L-glutamate ligase n=1 Tax=Bradyrh... [more]
A0A4Q0QAF3_9BRAD3.540e-9056.30Coenzyme F420-0:L-glutamate ligase n=4 Tax=Bradyrh... [more]
A0A3S0H3I7_9BRAD5.190e-9054.33Coenzyme F420-0:L-glutamate ligase n=5 Tax=Bradyrh... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig105contigP-wetherbeei_contig105:10579..11343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog504832.OCAR_5004
Preferred namecofE
PFAMsF420_ligase
Model size765
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00064,RC00090,RC00141
KEGG koko:K12234
KEGG ReactionR09399,R09400
KEGG Pathwayko00680,ko01120,map00680,map01120
KEGG ModuleM00378
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.5e-93
EggNOG OGsCOG1478@1|root,COG1478@2|Bacteria,1PQHN@1224|Proteobacteria,2TU1P@28211|Alphaproteobacteria,3JQVJ@41294|Bradyrhizobiaceae
EC6.3.2.31,6.3.2.34
DescriptionF420-0:Gamma-glutamyl ligase
Cds size765
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185872.4070706-CDS-P-wetherbeei_contig105:10578..113431683185872.4070706-CDS-P-wetherbeei_contig105:10578..11343Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig105 10579..11343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig105.9.1prot_P-wetherbeei_contig105.9.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig105 10579..11343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig105.9.1

>prot_P-wetherbeei_contig105.9.1 ID=prot_P-wetherbeei_contig105.9.1|Name=mRNA_P-wetherbeei_contig105.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=255bp
SITLGAIPDIPLIAPGDPLAKIIYDRAIAAGMALQSGDVLVIAQKIVSKS
ENRYADLRSITPSARAREIAAVVEKDPRFVEAVLQEASDIVRYQKNVLIV
AHRIGVVMANAGIDQSNIDHADGAEKILLLPQDPDASAERLRTELLALSG
ADVAIIINDSVGRAWRNGITGIAIGVAGLTALQDLRGEPDLFGRRLEVTE
VATADELAAAGSLLQGQGSQGQPVVLIRGFVPPKADHHKPATALVRDKRI
DMFR*
back to top

mRNA from alignment at P-wetherbeei_contig105:10579..11343-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig105.9.1 ID=mRNA_P-wetherbeei_contig105.9.1|Name=mRNA_P-wetherbeei_contig105.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig105:10579..11343- (Phaeothamnion wetherbeei SAG_119_79)
AGCATCACCCTTGGCGCAATTCCCGATATACCACTGATTGCGCCGGGTGA TCCGCTGGCAAAAATCATTTATGACCGCGCCATTGCAGCGGGCATGGCGC TGCAAAGCGGCGATGTGCTGGTGATCGCGCAAAAGATCGTCTCCAAATCT GAAAACCGCTATGCCGATTTGCGCAGCATTACTCCATCGGCGCGCGCCCG TGAAATTGCCGCTGTTGTGGAAAAAGACCCGCGCTTTGTTGAAGCCGTGT TGCAGGAAGCTTCCGACATTGTGCGCTATCAGAAAAATGTCCTGATTGTG GCGCACCGCATCGGCGTGGTGATGGCAAATGCCGGCATTGATCAATCCAA TATTGATCATGCAGATGGCGCGGAAAAAATCCTGCTGCTGCCGCAGGACC CGGACGCTTCCGCCGAACGTCTGCGTACGGAGTTATTGGCGCTGAGCGGC GCCGATGTCGCCATCATCATCAATGACAGTGTCGGGCGCGCCTGGCGCAA TGGCATTACCGGCATCGCCATTGGCGTTGCGGGATTGACCGCATTACAGG ATTTGCGGGGCGAGCCGGATCTGTTTGGCCGCAGGCTGGAAGTGACCGAA GTGGCCACCGCCGATGAGCTGGCAGCGGCCGGATCACTGTTGCAGGGGCA GGGTTCGCAGGGCCAGCCGGTGGTGCTTATTCGCGGCTTTGTCCCCCCGA AAGCCGATCATCACAAACCTGCCACGGCTTTGGTGCGCGACAAGCGCATC GATATGTTCCGTTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig105:10579..11343-

>mRNA_P-wetherbeei_contig105.9.1 ID=mRNA_P-wetherbeei_contig105.9.1|Name=mRNA_P-wetherbeei_contig105.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig105:10579..11343- (Phaeothamnion wetherbeei SAG_119_79)
AGCATCACCCTTGGCGCAATTCCCGATATACCACTGATTGCGCCGGGTGA
TCCGCTGGCAAAAATCATTTATGACCGCGCCATTGCAGCGGGCATGGCGC
TGCAAAGCGGCGATGTGCTGGTGATCGCGCAAAAGATCGTCTCCAAATCT
GAAAACCGCTATGCCGATTTGCGCAGCATTACTCCATCGGCGCGCGCCCG
TGAAATTGCCGCTGTTGTGGAAAAAGACCCGCGCTTTGTTGAAGCCGTGT
TGCAGGAAGCTTCCGACATTGTGCGCTATCAGAAAAATGTCCTGATTGTG
GCGCACCGCATCGGCGTGGTGATGGCAAATGCCGGCATTGATCAATCCAA
TATTGATCATGCAGATGGCGCGGAAAAAATCCTGCTGCTGCCGCAGGACC
CGGACGCTTCCGCCGAACGTCTGCGTACGGAGTTATTGGCGCTGAGCGGC
GCCGATGTCGCCATCATCATCAATGACAGTGTCGGGCGCGCCTGGCGCAA
TGGCATTACCGGCATCGCCATTGGCGTTGCGGGATTGACCGCATTACAGG
ATTTGCGGGGCGAGCCGGATCTGTTTGGCCGCAGGCTGGAAGTGACCGAA
GTGGCCACCGCCGATGAGCTGGCAGCGGCCGGATCACTGTTGCAGGGGCA
GGGTTCGCAGGGCCAGCCGGTGGTGCTTATTCGCGGCTTTGTCCCCCCGA
AAGCCGATCATCACAAACCTGCCACGGCTTTGGTGCGCGACAAGCGCATC
GATATGTTCCGTTAG
back to top