mRNA_P-wetherbeei_contig105.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig105.5.1
Unique NamemRNA_P-wetherbeei_contig105.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig105.5.1 vs. uniprot
Match: A0A3C0TVL0_9PROT (DNA-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TVL0_9PROT)

HSP 1 Score: 112 bits (279), Expect = 1.200e-29
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    1 MALFFDQTWFDAKLQQRGLDRAALAAVLGISLADLDDMWKDQREITPREVTLLAELLGVSTKEIAERGGVATPVPVARADLSQLVARLEAI 273
            MALFFDQ WFDA+L +RGLDR +LA +LG+   +++DMWKDQREI+ REV LLAELLGVS ++IA  GGVATP+P A+  L +    L  I
Sbjct:    1 MALFFDQEWFDARLGERGLDRPSLAVILGLHPEEIEDMWKDQREISAREVLLLAELLGVSVQDIARYGGVATPLPGAQTALGEKAEALARI 91          
BLAST of mRNA_P-wetherbeei_contig105.5.1 vs. uniprot
Match: A0A2E1EGS3_9HYPH (DNA-binding protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2E1EGS3_9HYPH)

HSP 1 Score: 104 bits (260), Expect = 1.000e-26
Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    1 MALFFDQTWFDAKLQQRGLDRAALAAVLGISLADLDDMWKDQREITPREVTLLAELLGVSTKEIAERGGVATPVPVARADLSQ------LVARLEAI 273
            MALFFDQ WFDAKL + GL R  +A  LG+S   +D++WKDQRE+ PREV+LLA+LLG +  E+A + GV+TPVP A+A          L+ARL+A+
Sbjct:    1 MALFFDQEWFDAKLGEAGLTRDTVATALGLSRVQVDEIWKDQRELAPREVSLLAQLLGAAPAEVANKAGVSTPVPAAQAPSPSAEGQQALMARLDAM 97          
BLAST of mRNA_P-wetherbeei_contig105.5.1 vs. uniprot
Match: A0A2N3BZQ0_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-3 TaxID=2013666 RepID=A0A2N3BZQ0_9PROT)

HSP 1 Score: 99.4 bits (246), Expect = 1.220e-24
Identity = 52/114 (45.61%), Postives = 77/114 (67.54%), Query Frame = 1
Query:    1 MALFFDQTWFDAKLQQRGLDRAALAAVLGISLADLDDMWKDQREITPREVTLLAELLGVSTKEIAERGGVATPVPVARADLSQ---LVARLEAIXXXXXXXXXXXEHAVAEIRA 333
            MALFFDQ WFDAKL+Q G  R  +A+ LG+S A++D++WKDQRE+  R+V++LA LL  S+ E+A + G++TPVP A A  S    L+ +L+A+           E AVA++++
Sbjct:    1 MALFFDQEWFDAKLKQAGRTRDDVASALGLSRAEIDEIWKDQRELASRDVSVLAGLLAASSVEVANKAGISTPVPAAPAQASSDAALMTKLDAMDLRLARI----ERAVADLQS 110          
BLAST of mRNA_P-wetherbeei_contig105.5.1 vs. uniprot
Match: A0A8D5WNP7_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium SO-S41 TaxID=2829083 RepID=A0A8D5WNP7_9PROT)

HSP 1 Score: 96.3 bits (238), Expect = 1.200e-23
Identity = 46/90 (51.11%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    1 MALFFDQTWFDAKLQQRGLDRAALAAVLGISLADLDDMWKDQREITPREVTLLAELLGVSTKEIAERGGVATPVPVARADLSQLVARLEA 270
            MALFFDQTWFDA+L +R L RA L A+LG+    + ++WKDQRE+   +V+L+A LL +S  EIA R G++TPVPV  + + + +A +EA
Sbjct:    1 MALFFDQTWFDAQLAERHLRRADLGAMLGLDETGIGEVWKDQRELKAADVSLIAALLNLSPAEIAHRAGISTPVPVEASGVERRLAAIEA 90          
BLAST of mRNA_P-wetherbeei_contig105.5.1 vs. uniprot
Match: A0A4Q3RZW2_9CAUL (XRE family transcriptional regulator n=1 Tax=Caulobacteraceae bacterium TaxID=1978230 RepID=A0A4Q3RZW2_9CAUL)

HSP 1 Score: 94.0 bits (232), Expect = 1.100e-22
Identity = 55/95 (57.89%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    1 MALFFDQTWFDAKLQQRGLDRAALAAVLGISLADLDDMWKDQREITPREVTLLAELLGVSTKEIAERGGVATPVP----VAR-ADLSQLVARLEA 270
            MALFFD  W++A+L +RGL RA LAAV G+S ADL  ++KDQRE++  EV   AELLGVS  E A R GV+TPVP    +AR A+L + VA LEA
Sbjct:    1 MALFFDVDWYEARLAERGLSRAVLAAVSGLSEADLALVFKDQRELSAAEVAAFAELLGVSPVEAAVRAGVSTPVPGSDPLARIAELERRVAALEA 95          
BLAST of mRNA_P-wetherbeei_contig105.5.1 vs. uniprot
Match: A0A1E4GVB2_9CAUL (HTH cro/C1-type domain-containing protein n=1 Tax=Phenylobacterium sp. SCN 70-31 TaxID=1660129 RepID=A0A1E4GVB2_9CAUL)

HSP 1 Score: 94.0 bits (232), Expect = 1.750e-22
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 MALFFDQTWFDAKLQQRGLDRAALAAVLGISLADLDDMWKDQREITPREVTLLAELLGVSTKEIAERGGVATPVPVARAD 240
            MALFFD  WFD KL++RGL R  LAAV G+S ADL  ++KDQ E++  +V   AELLGV+ +E+A R GV+TP PV+ AD
Sbjct:    1 MALFFDAPWFDGKLEERGLSRTVLAAVAGLSEADLALVFKDQGELSAGQVAAFAELLGVTAEEVANRAGVSTPTPVSDAD 80          
BLAST of mRNA_P-wetherbeei_contig105.5.1 vs. uniprot
Match: A0A328AEW1_9CAUL (DNA-binding protein n=1 Tax=Phenylobacterium soli TaxID=2170551 RepID=A0A328AEW1_9CAUL)

HSP 1 Score: 93.2 bits (230), Expect = 2.200e-22
Identity = 45/77 (58.44%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 MALFFDQTWFDAKLQQRGLDRAALAAVLGISLADLDDMWKDQREITPREVTLLAELLGVSTKEIAERGGVATPVPVA 231
            MALFFD  WFDA+L +RGL RA LAA  G+S ADL  ++KDQRE++ +EV   AELLGV+  E+A+R G++TP+P A
Sbjct:    1 MALFFDAEWFDARLGERGLSRAVLAAAAGLSEADLALVFKDQRELSAQEVACFAELLGVAAAEVADRAGISTPLPGA 77          
BLAST of mRNA_P-wetherbeei_contig105.5.1 vs. uniprot
Match: A0A6G4R0Z3_9CAUL (DNA-binding protein n=1 Tax=Caulobacter sp. 602-2 TaxID=2710887 RepID=A0A6G4R0Z3_9CAUL)

HSP 1 Score: 93.2 bits (230), Expect = 2.530e-22
Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = 1
Query:    1 MALFFDQTWFDAKLQQRGLDRAALAAVLGISLADLDDMWKDQREITPREVTLLAELLGVSTKEIAERGGV---ATPV-PVAR--ADLSQLVARLE 267
            MALFFD  W+DA+L +RGLDRAALAA  G+S A++  ++KDQREI P E+ + AE++GVS +E A R GV   A P  P AR  A+L   VARLE
Sbjct:    1 MALFFDHQWYDARLAERGLDRAALAAAAGLSAAEIGLVFKDQREIRPAELAVFAEMVGVSREEAARRAGVGAHAAPADPAARRIAELEARVARLE 95          
BLAST of mRNA_P-wetherbeei_contig105.5.1 vs. uniprot
Match: A0A2N3E1Z1_9PROT (DNA-binding protein n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3E1Z1_9PROT)

HSP 1 Score: 93.2 bits (230), Expect = 3.240e-22
Identity = 51/115 (44.35%), Postives = 78/115 (67.83%), Query Frame = 1
Query:    1 MALFFDQTWFDAKLQQRGLDRAALAAVLGISLADLDDMWKDQREITPREVTLLAELLGVSTKEIAERGGVATPVPVARA----DLSQLVARLEAIXXXXXXXXXXXEHAVAEIRA 333
            MALFFDQ WFDAKL++ G  R  +A+VLG+S A+++++WKDQRE+   +V++LA LL  S+ E+A + G++TPVP A A    D S + A+L+A+           E AVA++++
Sbjct:    1 MALFFDQEWFDAKLREAGRTRDDVASVLGLSRAEVEEIWKDQRELASGDVSILAGLLAASSAEVANKAGISTPVPAAPARDGGDAS-VTAKLDAMDARLARI----ERAVADLQS 110          
BLAST of mRNA_P-wetherbeei_contig105.5.1 vs. uniprot
Match: A0A2G5RFX6_9CAUL (DNA-binding protein n=2 Tax=unclassified Caulobacter TaxID=2648921 RepID=A0A2G5RFX6_9CAUL)

HSP 1 Score: 92.0 bits (227), Expect = 5.620e-22
Identity = 51/89 (57.30%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    1 MALFFDQTWFDAKLQQRGLDRAALAAVLGISLADLDDMWKDQREITPREVTLLAELLGVSTKEIAERGGVATPVPVARADLSQLVARLE 267
            MALFFDQ W+DA+L +RGLDRA LAA  G+S A+L   +KDQRE++ REV++ AELLGVS  E A R GV  P P++ A   Q +A LE
Sbjct:    1 MALFFDQAWYDARLAERGLDRAVLAAAAGLSPAELALAFKDQRELSMREVSVFAELLGVSAAEAASRAGVRPP-PISDA---QRIAALE 85          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig105.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TVL0_9PROT1.200e-2960.44DNA-binding protein n=1 Tax=Alphaproteobacteria ba... [more]
A0A2E1EGS3_9HYPH1.000e-2653.61DNA-binding protein n=2 Tax=Hyphomicrobiales TaxID... [more]
A0A2N3BZQ0_9PROT1.220e-2445.61Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A8D5WNP7_9PROT1.200e-2351.11Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A4Q3RZW2_9CAUL1.100e-2257.89XRE family transcriptional regulator n=1 Tax=Caulo... [more]
A0A1E4GVB2_9CAUL1.750e-2257.50HTH cro/C1-type domain-containing protein n=1 Tax=... [more]
A0A328AEW1_9CAUL2.200e-2258.44DNA-binding protein n=1 Tax=Phenylobacterium soli ... [more]
A0A6G4R0Z3_9CAUL2.530e-2255.79DNA-binding protein n=1 Tax=Caulobacter sp. 602-2 ... [more]
A0A2N3E1Z1_9PROT3.240e-2244.35DNA-binding protein n=1 Tax=Alphaproteobacteria ba... [more]
A0A2G5RFX6_9CAUL5.620e-2257.30DNA-binding protein n=2 Tax=unclassified Caulobact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig105contigP-wetherbeei_contig105:5790..6137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog450851.PHZ_c0428
Model size348
Max annot lvl204458|Caulobacterales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.95e-21
EggNOG OGs2E9X4@1|root,3342V@2|Bacteria,1N7Z6@1224|Proteobacteria,2UHUM@28211|Alphaproteobacteria,2KJBF@204458|Caulobacterales
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185872.289815-CDS-P-wetherbeei_contig105:5789..61371683185872.289815-CDS-P-wetherbeei_contig105:5789..6137Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig105 5790..6137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig105.5.1prot_P-wetherbeei_contig105.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig105 5790..6137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig105.5.1

>prot_P-wetherbeei_contig105.5.1 ID=prot_P-wetherbeei_contig105.5.1|Name=mRNA_P-wetherbeei_contig105.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
MALFFDQTWFDAKLQQRGLDRAALAAVLGISLADLDDMWKDQREITPREV
TLLAELLGVSTKEIAERGGVATPVPVARADLSQLVARLEAIEARLDVIEA
RLEHAVAEIRAKLGL*
back to top

mRNA from alignment at P-wetherbeei_contig105:5790..6137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig105.5.1 ID=mRNA_P-wetherbeei_contig105.5.1|Name=mRNA_P-wetherbeei_contig105.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig105:5790..6137+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTTATTTTTTGATCAGACATGGTTTGACGCGAAATTGCAGCAGCG CGGTCTGGACCGGGCGGCGCTTGCTGCCGTGTTGGGGATCAGTCTGGCCG ATCTGGACGATATGTGGAAAGACCAGCGCGAAATCACCCCGCGGGAGGTG ACGTTGCTGGCCGAACTGCTGGGGGTCAGCACAAAAGAAATTGCTGAACG CGGCGGCGTGGCAACCCCCGTGCCGGTGGCGAGAGCGGATTTGTCGCAAT TGGTTGCGCGCCTTGAAGCGATAGAGGCGCGCCTTGATGTAATAGAAGCA CGGCTGGAACACGCCGTGGCGGAAATCAGAGCGAAGCTTGGTCTGTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig105:5790..6137+

>mRNA_P-wetherbeei_contig105.5.1 ID=mRNA_P-wetherbeei_contig105.5.1|Name=mRNA_P-wetherbeei_contig105.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig105:5790..6137+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTTATTTTTTGATCAGACATGGTTTGACGCGAAATTGCAGCAGCG
CGGTCTGGACCGGGCGGCGCTTGCTGCCGTGTTGGGGATCAGTCTGGCCG
ATCTGGACGATATGTGGAAAGACCAGCGCGAAATCACCCCGCGGGAGGTG
ACGTTGCTGGCCGAACTGCTGGGGGTCAGCACAAAAGAAATTGCTGAACG
CGGCGGCGTGGCAACCCCCGTGCCGGTGGCGAGAGCGGATTTGTCGCAAT
TGGTTGCGCGCCTTGAAGCGATAGAGGCGCGCCTTGATGTAATAGAAGCA
CGGCTGGAACACGCCGTGGCGGAAATCAGAGCGAAGCTTGGTCTGTAA
back to top