mRNA_P-wetherbeei_contig105.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig105.3.1
Unique NamemRNA_P-wetherbeei_contig105.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig105.3.1 vs. uniprot
Match: A0A3C0TUL5_9PROT (PSII_BNR domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TUL5_9PROT)

HSP 1 Score: 302 bits (774), Expect = 7.960e-98
Identity = 241/330 (73.03%), Postives = 273/330 (82.73%), Query Frame = 1
Query:   28 AAVTLAAPAGAENRMGLPNPETSVAEDAMQSDLATKSLLLGSAWAGDRLVAVGHWGHVVLSDDKGVTWRQAQKVATRNTLTSVFFADEKNGWAVGHDTVVLHTSDGGENWELQYSSPVAETPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPLLAEESEEFDQPHLNQIFWGPDRKTQVMIAAEAGNFFRSLDAGKTWEQIKIPYIGSFWGGMTTKEGRILTLGMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSMIRPSRTGYSSVLESVNDEVVLFGDQGIERQPAKFVTDAGAGS 1017
            AA+T +    AEN MG   PE +  E A+ ++LAT++LLLG A AGDRLVAVG+WGH+VLSDDKG+TWRQAQKV TR TLTSV+F D+K+GWAVGHDT++LHT DGGE WE+QYS P      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+RP+L EE EEF++PHLN IFWGPDR+TQV+IA+EAGNFFRS DAGKTWE + +PY GSFW GM TK GRIL LGMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     ++IRPSRTG ++V E  ND+VVLFGDQGI  QPA    +   GS
Sbjct:   28 AALTASPAVQAENIMGQNPPEKAPIEYALPTELATETLLLGVAKAGDRLVAVGNWGHIVLSDDKGLTWRQAQKVPTRTTLTSVYFTDDKHGWAVGHDTIILHTQDGGETWEMQYSDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRPVLEEELEEFEEPHLNMIFWGPDRQTQVLIASEAGNFFRSSDAGKTWEILNLPYRGSFWSGMVTKTGRILALGMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGESFTTVIRPSRTGLTNVAEGANDQVVLFGDQGIALQPAHLPKEPPPGS 357          
BLAST of mRNA_P-wetherbeei_contig105.3.1 vs. uniprot
Match: A0A352KE15_9PROT (Uncharacterized protein n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KE15_9PROT)

HSP 1 Score: 246 bits (627), Expect = 8.320e-76
Identity = 153/223 (68.61%), Postives = 177/223 (79.37%), Query Frame = 1
Query:   43 AAPAGAENRMGLPNPETSVAEDAMQSDLATKSLLLGSAWAGDRLVAVGHWGHVVLSDDKGVTWRQAQKVATRNTLTSVFFADEKNGWAVGHDTVVLHTSDGGENWELQYSSPVAETPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPLLAEESEEFDQPHLNQIFWGPDRKTQVMIAAEAGNFFRSLDAGKTWEQIKIPYIGSFWGGMTTKEGRILTL 711
            AA A    ++G P PET+  E A+ S LAT++LLL  A AG+RLVAVGHWGHVVLSDD G+ WRQA+ V TRNTLTSV+FAD+KNGWAVGHD +VLHT       E+QYS P AETPL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R LL   SE+F  PHLN IFWGPD+ +QV+I+AEAG FFRS DAGKTWE+++ PY GSFWGG+T + GR+L L
Sbjct:   28 AALAQTPKKLGGPTPETAPIEYAIPSKLATRTLLLSVAHAGERLVAVGHWGHVVLSDDGGLNWRQAKSVPTRNTLTSVYFADDKNGWAVGHDAIVLHTXXXXXXXEMQYSDPPAETPLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRDLLENPSEDFYNPHLNNIFWGPDKSSQVLISAEAGYFFRSNDAGKTWEELQTPYDGSFWGGITLRSGRVLAL 250          
BLAST of mRNA_P-wetherbeei_contig105.3.1 vs. uniprot
Match: A0A2E6U217_9HYPH (PSII_BNR domain-containing protein n=2 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E6U217_9HYPH)

HSP 1 Score: 172 bits (436), Expect = 1.770e-47
Identity = 187/325 (57.54%), Postives = 227/325 (69.85%), Query Frame = 1
Query:    1 MRAAMMVIGAAVTLAAPAGAENRMGLPNPETSVAEDAMQSDLATKSLLLGSAWAGDRLVAVGHWGHVVLSDDKGVTWRQAQKVATRNTLTSVFFADEKNGWAVGHDTVVLHTSDGGENWELQYSSPVAETPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPLLAEESEEFDQPHLNQIFWGPDRKTQVMIAAEAGNFFRSLDAGKTWEQIKIPYIGSFWGGMTTKEGRILTLGMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSMIRPSRTGYSSVLESVNDEVVLFGDQGIE 975
            + A++ +   AV++   A A++  G P P     E A+ SD+A+++LLL    AG RLVAVG +GHV+LSDDKG +WRQA  V TRNTL  V F D + G+AVGH   +L T DGGENW LQY+    ETPL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX R L+ +  ++F   HLN +F   D K  + I AE G  ++S D G+ W+ I+  Y GSFWGG+    G +L  GMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +  RP R  +++ +    DE+VL GD GI+
Sbjct:   11 LAASLFIFAIAVSIDHEAFADDHGGKPQPY----EYAVASDMASEALLLDVDSAGSRLVAVGEFGHVLLSDDKGTSWRQAASVPTRNTLVGVTFLDNQTGYAVGHAATILKTEDGGENWTLQYNERNGETPLFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRALVEDSYDDF---HLNDVF--ADNKGNLYIPAEFGTVYKSRDRGQNWQAIETGYDGSFWGGLGLDNGDLLVFGMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSFTNQPRPDRLSFATAIGKTGDEIVLLGDPGIK 326          
BLAST of mRNA_P-wetherbeei_contig105.3.1 vs. uniprot
Match: X5MMX2_9HYPH (FIG002465: BNR repeat protein n=1 Tax=Candidatus Phaeomarinobacter ectocarpi TaxID=1458461 RepID=X5MMX2_9HYPH)

HSP 1 Score: 172 bits (436), Expect = 2.860e-47
Identity = 121/200 (60.50%), Postives = 144/200 (72.00%), Query Frame = 1
Query:  109 AMQSDLATKSLLLGSAWAGDRLVAVGHWGHVVLSDDKGVTWRQAQKVATRNTLTSVFFADEKNGWAVGHDTVVLHTSDGGENWELQYSSPVAETPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPLLAE-----ESEEFDQPHLNQIFWGPDRKTQVMIAAEAGNFFRSLDAGKTWEQIKIPYIGSFWGGMTTKE 693
            A  SDLA K+LL+ +A  G+R+VAVG +GH+V+SDD+G TWRQA  V T+  LT+V+FAD+K G+AVGHD V++ T DGGENW+L+Y  P AE PL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX            E  E++ PHLN +F GPD    + IAAE G  FRSLD G  WE IK PY GSFWGGMT  +
Sbjct:   48 ATPSDLAAKTLLVAAADLGERIVAVGQFGHIVISDDEGATWRQAASVPTQALLTAVYFADDKVGYAVGHDAVIIKTEDGGENWDLKYDDPEAEMPLFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLEYE-PHLNALFEGPDGT--MFIAAETGFVFRSLDNGANWEPIKTPYFGSFWGGMTLND 244          
BLAST of mRNA_P-wetherbeei_contig105.3.1 vs. uniprot
Match: A0A3D4F2M7_9HYPH (Uncharacterized protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A3D4F2M7_9HYPH)

HSP 1 Score: 160 bits (406), Expect = 3.600e-43
Identity = 171/292 (58.56%), Postives = 208/292 (71.23%), Query Frame = 1
Query:  103 EDAMQSDLATKSLLLGSAWAGDRLVAVGHWGHVVLSDDKGVTWRQAQKVATRNTLTSVFFADEKNGWAVGHDTVVLHTSDGGENWELQYSSPVAETPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPLLAEESEEFDQPHLNQIFWGPDRKTQVMIAAEAGNFFRSLDAGKTWEQIKIPYIGSFWGGMTTKEGRILTLGMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSMIRPSRTGYSSVLESVNDEVVLFGDQGIER 978
            E A  SD+ TK+L+L  A  G RLVAVG +GH++ SDD+G TW QA+ V TRNT+T + F D+K G+AVGHD  +L T DGGE+W L+Y     E PL    XXXXXXXXXXXXXXXXXXXXXXXXXX  RPL+    ++F   HLN +F   D    + I AE G  ++S D G+T+E I+ PY GSFWGG+    G +L  GMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     ++ +RP R  +++V    + EV+L+GD G+ R
Sbjct:   30 EYAKPSDMTTKALILDVAEIGSRLVAVGEFGHIIYSDDRGETWVQARDVPTRNTITDITFTDDKVGFAVGHDATILKTEDGGESWMLKYIERRGENPLFGLDXXXXXXXXXXXXXXXXXXXXXXXXXXTQRPLVEGGYDDF---HLNGLF--SDAAGNMYIPAEFGVVYKSTDGGRTFEGIQTPYEGSFWGGLPLANGDLLIWGMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGNFEAYVRPDRLSFATVSSKSDSEVLLYGDPGVLR 316          
BLAST of mRNA_P-wetherbeei_contig105.3.1 vs. uniprot
Match: A0A845Q6C9_9HYPH (PSII_BNR domain-containing protein n=1 Tax=Pyruvatibacter mobilis TaxID=1712261 RepID=A0A845Q6C9_9HYPH)

HSP 1 Score: 156 bits (395), Expect = 3.050e-41
Identity = 113/200 (56.50%), Postives = 133/200 (66.50%), Query Frame = 1
Query:  109 AMQSDLATKSLLLGSAWAGDRLVAVGHWGHVVLSDDKGVTWRQAQKVATRNTLTSVFFADEKNGWAVGHDTVVLHTSDGGENWELQYSSPVAETPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPLLAEESEEFDQPHLNQ----IFWGPDRKTQVMIAAEAGNFFRSLDAGKTWEQIKIPYIGSFWGGMTTKEG 696
            A  SDLA +SLL+ +A  G+R+VAVG +GHVV+SDD+G TWRQA +V T+  LT V+F D+K G+AVGHD V++ T DGGE WEL+YS P AE PL   XXXXXXXXXXXXXXXXXXXXXXXXXXXX                       +F GP     + IAAE G  FRS D G  WE IK PY GSFWGG+T  +G
Sbjct:   48 ATPSDLAARSLLVAAADLGERIVAVGQFGHVVISDDRGETWRQASQVPTQALLTGVYFVDDKTGYAVGHDAVIIKTEDGGETWELKYSDPEAEMPLFSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFRGPSGS--LFIAAETGFIFRSTDNGANWEPIKTPYFGSFWGGITLNDG 245          
BLAST of mRNA_P-wetherbeei_contig105.3.1 vs. uniprot
Match: A0A6N6VQ11_9HYPH (PSII_BNR domain-containing protein n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VQ11_9HYPH)

HSP 1 Score: 155 bits (391), Expect = 1.170e-40
Identity = 125/231 (54.11%), Postives = 152/231 (65.80%), Query Frame = 1
Query:    4 RAAMMVIGAAVTLAAPAGAENRMGLPNPETSVAEDAMQSDLATKSLLLGSAWAGDRLVAVGHWGHVVLSDDKGVTWRQAQKVATRNTLTSVFFADEKNGWAVGHDTVVLHTSDGGENWELQYSSPVAETPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPLLAEESEEFDQPHLNQIFWGPDRKTQVMIAAEAGNFFRSLDAGKTWEQIKIPYIGSFWGGMTTKEG 696
            R  M    A V  AAP GA++     +      E A  S LATK LLL +   G+RLVAVG +GHVV SDD G TW QA KV T+ TLTSV+F ++K G+A GHD+ VL T DGG NW L Y    A++P XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  R L+  E  + D  HLN +F   ++   V++AAE G+ FRS D GKT+++IK  Y GSFWGG+   +G
Sbjct:   13 RPVMAAALALVLAAAPLGAQSAHA-EDASADAVEYATPSKLATKDLLLAATKVGNRLVAVGEFGHVVYSDDMGATWVQAAKVPTQVTLTSVYFVNDKVGFAGGHDSTVLRTDDGGVNWTLAYHDVKAQSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQRKLV--EGSDLDS-HLNMVFG--EKSGTVLVAAEFGSVFRSTDKGKTFQEIKTGYEGSFWGGLALSDG 237          
BLAST of mRNA_P-wetherbeei_contig105.3.1 vs. uniprot
Match: B5JS97_9GAMM (Glycosyl hydrolase, BNR repeat n=1 Tax=gamma proteobacterium HTCC5015 TaxID=391615 RepID=B5JS97_9GAMM)

HSP 1 Score: 150 bits (379), Expect = 4.960e-39
Identity = 88/210 (41.90%), Postives = 117/210 (55.71%), Query Frame = 1
Query:  103 EDAMQSDLATKSLLLGSAWAGDRLVAVGHWGHVVLSDDKGVTWRQAQKVATRNTLTSVFFADEKNGWAVGHDTVVLHTSDGGENWELQYSSPVAETPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPLLAEESE-EFDQP---HLNQIFWGPDRKTQVMIAAEAGNFFRSLDAGKTWEQIKIPYIGSFWGGMTTKEGRILTLGMR 720
            E A+++ LA KSLLL    AG+RL+AVG +G++VLSDD+G TWRQAQ V  R TLT+V F DEK GWAVGHD V+L T DGGENW  QY +P  E PL                                   LA+ +E +   P   HL+Q+    +    +  +AEAG  +RSLD G+TW++I  PY GSF+G +      +L  G++
Sbjct:   35 EHAVKAPLAEKSLLLDVERAGERLIAVGGYGNIVLSDDEGSTWRQAQSVPARVTLTAVDFVDEKRGWAVGHDAVILKTIDGGENWTRQYFAPEEERPLLEVQFRENGRIGYALGAYSFRLVSNDGGKSWVSKDLADNAETDLGMPIEYHLHQVTKASNGVWYM--SAEAGMAYRSLDKGETWDRIPPPYDGSFFGALPLLGESVLMFGLQ 242          
BLAST of mRNA_P-wetherbeei_contig105.3.1 vs. uniprot
Match: A0A7V3H622_9BACT (Uncharacterized protein n=1 Tax=candidate division NC10 bacterium TaxID=2072417 RepID=A0A7V3H622_9BACT)

HSP 1 Score: 149 bits (375), Expect = 1.820e-38
Identity = 118/223 (52.91%), Postives = 142/223 (63.68%), Query Frame = 1
Query:   25 GAAVTLAAPAGAENRMGLPNPETSVAE------DAMQSDLATKSLLLGSAWAGDRLVAVGHWGHVVLSDDKGVTWRQAQKVATRNTLTSVFFADEKNGWAVGHDTVVLHTSDGGENWELQYSSPVAETPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPLLAEESEEFDQPHLNQIFWGPDRKTQVMIAAEAGNFFRSLDAGKTWEQIKIPYIGSFWG 675
            GAA+ LAA   A    GLP P  S A          ++ LA +SLLLG+A AG RLVAVG  GH++LSDD G +WRQA+ V T  TLT+V F D + GWAVGHD V+LHT DGGE W+ QY  P  E PL    XXXXXXXXXXXXXXXXXXXXXXXXXX  R +  E+       HLN +   PD +  + IA EAG+ +RS D G +W  +  PY GS++G
Sbjct:    6 GAALLLAAVLVA----GLPRPVASPASVPPDDRPVEKARLAARSLLLGAARAGSRLVAVGERGHILLSDDDGKSWRQAE-VPTHATLTAVHFPDARRGWAVGHDAVILHTEDGGERWQRQYHDPAREAPLLDVWXXXXXXXXXXXXXXXXXXXXXXXXXXRKRSIAEEDF------HLNALAAAPDGR--LFIAGEAGHLYRSDDGGWSWRDLPSPYAGSYFG 215          
BLAST of mRNA_P-wetherbeei_contig105.3.1 vs. uniprot
Match: A0A2D4VJS5_9HYPH (Uncharacterized protein n=2 Tax=Parvibaculum TaxID=256616 RepID=A0A2D4VJS5_9HYPH)

HSP 1 Score: 148 bits (373), Expect = 6.190e-38
Identity = 181/326 (55.52%), Postives = 218/326 (66.87%), Query Frame = 1
Query:    7 AAMMVIGAAVTLAAPAGAENRMGLPNPETSVAEDAMQSDLATKSLLLGSAWAGDRLVAVGHWGHVVLSDDKGVTWRQAQKVATRNTLTSVFFADEKNGWAVGHDTVVLHTSDGGENWELQYSSPVAETPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPLLAEESEEFDQPHLNQIFWGPDRKTQVMIAAEAGNFFRSLDAGKTWEQIKIPYIGSFWGGMTTKEGRILTLGMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSMIRPSRTGYSSVLESVNDEVVLFGDQGIERQP 984
            AA++        AA A A+ + G  N E    E A QS LA K LLL +A AGDR+VAVG +G+VV SDD+G  W QA+ V T+ TLT V F  +K G+AVGHD +VL T D GE WE  +  P +ETP       XXXXXXXXXXXXXXXXXXXXXXXX  R L     +++   HLN  F    +   + IAAE G  +RS D G T+++I+ PY GSFWGG+   +G        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK + R  R GYS+V++  + +VV+FG+ G +  P
Sbjct:   22 AALVAFTPLTAKAADAAAQGQNGGQNDEI---EYATQSRLAAKELLLAAANAGDRIVAVGEFGNVVYSDDRGQNWTQAKTVPTQATLTDVTFITDKLGYAVGHDAIVLRTRDAGETWERAFYDPESETPFMTVLFEXXXXXXXXXXXXXXXXXXXXXXXXNERTLSEGLLDDY---HLNGAF--ETKSGAIFIAAEFGVVYRSTDDGATFDRIQTPYEGSFWGGLALDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEVTRSDRLGYSAVVKGADGKVVVFGEPGAKVMP 339          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig105.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TUL5_9PROT7.960e-9873.03PSII_BNR domain-containing protein n=1 Tax=Alphapr... [more]
A0A352KE15_9PROT8.320e-7668.61Uncharacterized protein n=3 Tax=Alphaproteobacteri... [more]
A0A2E6U217_9HYPH1.770e-4757.54PSII_BNR domain-containing protein n=2 Tax=Rhodobi... [more]
X5MMX2_9HYPH2.860e-4760.50FIG002465: BNR repeat protein n=1 Tax=Candidatus P... [more]
A0A3D4F2M7_9HYPH3.600e-4358.56Uncharacterized protein n=1 Tax=Rhodobiaceae bacte... [more]
A0A845Q6C9_9HYPH3.050e-4156.50PSII_BNR domain-containing protein n=1 Tax=Pyruvat... [more]
A0A6N6VQ11_9HYPH1.170e-4054.11PSII_BNR domain-containing protein n=1 Tax=Parviba... [more]
B5JS97_9GAMM4.960e-3941.90Glycosyl hydrolase, BNR repeat n=1 Tax=gamma prote... [more]
A0A7V3H622_9BACT1.820e-3852.91Uncharacterized protein n=1 Tax=candidate division... [more]
A0A2D4VJS5_9HYPH6.190e-3855.52Uncharacterized protein n=2 Tax=Parvibaculum TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig105contigP-wetherbeei_contig105:3731..4750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog391615.ABSJ01000054_gene1378
PFAMsPSII_BNR
Model size1020
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.47e-40
EggNOG OGsCOG4447@1|root,COG4447@2|Bacteria,1RCNG@1224|Proteobacteria,1S4IP@1236|Gammaproteobacteria
DescriptionPhotosynthesis system II assembly factor YCF48
Cds size1020
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185872.2338524-CDS-P-wetherbeei_contig105:3730..47501683185872.2338524-CDS-P-wetherbeei_contig105:3730..4750Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig105 3731..4750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig105.3.1prot_P-wetherbeei_contig105.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig105 3731..4750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig105.3.1

>prot_P-wetherbeei_contig105.3.1 ID=prot_P-wetherbeei_contig105.3.1|Name=mRNA_P-wetherbeei_contig105.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=340bp
MRAAMMVIGAAVTLAAPAGAENRMGLPNPETSVAEDAMQSDLATKSLLLG
SAWAGDRLVAVGHWGHVVLSDDKGVTWRQAQKVATRNTLTSVFFADEKNG
WAVGHDTVVLHTSDGGENWELQYSSPVAETPLLSVWFENTKHGIATGSFS
FMLETFDGGVTWESRPLLAEESEEFDQPHLNQIFWGPDRKTQVMIAAEAG
NFFRSLDAGKTWEQIKIPYIGSFWGGMTTKEGRILTLGMRGNIFKSDDLG
VSWEKVPTGADQSFSGGTQLADGTIVAVGLGGTVAYSTDNGSSFKSMIRP
SRTGYSSVLESVNDEVVLFGDQGIERQPAKFVTDAGAGS*
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mRNA from alignment at P-wetherbeei_contig105:3731..4750+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig105.3.1 ID=mRNA_P-wetherbeei_contig105.3.1|Name=mRNA_P-wetherbeei_contig105.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1020bp|location=Sequence derived from alignment at P-wetherbeei_contig105:3731..4750+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGCGGCAATGATGGTAATCGGCGCGGCCGTTACGCTGGCGGCGCC TGCCGGCGCGGAAAATCGTATGGGGCTGCCAAACCCGGAAACGTCCGTTG CAGAAGACGCGATGCAATCAGATCTGGCAACCAAATCGCTTCTGCTGGGT TCGGCCTGGGCTGGCGATCGTCTGGTGGCGGTGGGTCATTGGGGGCATGT TGTTCTGTCAGACGACAAAGGCGTTACCTGGCGTCAAGCGCAAAAAGTCG CCACCCGCAATACCCTGACATCAGTATTTTTTGCGGATGAAAAAAACGGC TGGGCTGTGGGTCATGATACGGTCGTGCTACACACCAGTGACGGCGGCGA GAACTGGGAGCTGCAATATTCCAGTCCTGTCGCGGAGACACCGCTTTTAA GCGTGTGGTTTGAAAACACGAAGCACGGTATTGCGACCGGTTCATTCAGT TTCATGCTGGAAACATTTGATGGCGGCGTCACCTGGGAAAGCCGTCCCCT GCTGGCCGAAGAAAGCGAAGAATTTGATCAGCCGCACCTGAACCAGATTT TCTGGGGACCGGATCGCAAAACCCAGGTGATGATTGCAGCCGAAGCCGGT AATTTTTTCCGCTCGCTTGACGCCGGCAAAACCTGGGAACAGATCAAAAT ACCTTATATCGGCTCCTTCTGGGGGGGCATGACCACCAAAGAAGGGCGCA TTTTGACCTTAGGCATGCGGGGTAATATTTTTAAAAGCGATGATTTGGGT GTGAGCTGGGAAAAAGTGCCGACTGGTGCGGATCAATCCTTCAGCGGCGG GACACAGCTAGCAGATGGCACAATTGTCGCGGTCGGCCTTGGCGGTACGG TTGCTTACAGCACGGATAATGGCAGCAGCTTCAAAAGCATGATCCGCCCG TCGCGCACCGGGTATTCATCGGTACTGGAATCGGTCAATGACGAAGTAGT GCTGTTCGGCGATCAGGGCATTGAACGTCAGCCGGCGAAATTCGTAACGG ATGCTGGCGCCGGAAGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig105:3731..4750+

>mRNA_P-wetherbeei_contig105.3.1 ID=mRNA_P-wetherbeei_contig105.3.1|Name=mRNA_P-wetherbeei_contig105.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1020bp|location=Sequence derived from alignment at P-wetherbeei_contig105:3731..4750+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGCGGCAATGATGGTAATCGGCGCGGCCGTTACGCTGGCGGCGCC
TGCCGGCGCGGAAAATCGTATGGGGCTGCCAAACCCGGAAACGTCCGTTG
CAGAAGACGCGATGCAATCAGATCTGGCAACCAAATCGCTTCTGCTGGGT
TCGGCCTGGGCTGGCGATCGTCTGGTGGCGGTGGGTCATTGGGGGCATGT
TGTTCTGTCAGACGACAAAGGCGTTACCTGGCGTCAAGCGCAAAAAGTCG
CCACCCGCAATACCCTGACATCAGTATTTTTTGCGGATGAAAAAAACGGC
TGGGCTGTGGGTCATGATACGGTCGTGCTACACACCAGTGACGGCGGCGA
GAACTGGGAGCTGCAATATTCCAGTCCTGTCGCGGAGACACCGCTTTTAA
GCGTGTGGTTTGAAAACACGAAGCACGGTATTGCGACCGGTTCATTCAGT
TTCATGCTGGAAACATTTGATGGCGGCGTCACCTGGGAAAGCCGTCCCCT
GCTGGCCGAAGAAAGCGAAGAATTTGATCAGCCGCACCTGAACCAGATTT
TCTGGGGACCGGATCGCAAAACCCAGGTGATGATTGCAGCCGAAGCCGGT
AATTTTTTCCGCTCGCTTGACGCCGGCAAAACCTGGGAACAGATCAAAAT
ACCTTATATCGGCTCCTTCTGGGGGGGCATGACCACCAAAGAAGGGCGCA
TTTTGACCTTAGGCATGCGGGGTAATATTTTTAAAAGCGATGATTTGGGT
GTGAGCTGGGAAAAAGTGCCGACTGGTGCGGATCAATCCTTCAGCGGCGG
GACACAGCTAGCAGATGGCACAATTGTCGCGGTCGGCCTTGGCGGTACGG
TTGCTTACAGCACGGATAATGGCAGCAGCTTCAAAAGCATGATCCGCCCG
TCGCGCACCGGGTATTCATCGGTACTGGAATCGGTCAATGACGAAGTAGT
GCTGTTCGGCGATCAGGGCATTGAACGTCAGCCGGCGAAATTCGTAACGG
ATGCTGGCGCCGGAAGCTAG
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