mRNA_P-wetherbeei_contig10471.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10471.1.1
Unique NamemRNA_P-wetherbeei_contig10471.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10471.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10471contigP-wetherbeei_contig10471:1465..2189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size726
Hectar predicted targeting categoryother localisation
Exons1
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185870.902459-UTR-P-wetherbeei_contig10471:1464..17241683185870.902459-UTR-P-wetherbeei_contig10471:1464..1724Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10471 1465..1724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185870.9099338-CDS-P-wetherbeei_contig10471:1724..21891683185870.9099338-CDS-P-wetherbeei_contig10471:1724..2189Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10471 1725..2189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10471.1.1prot_P-wetherbeei_contig10471.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10471 1725..2189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10471.1.1

>prot_P-wetherbeei_contig10471.1.1 ID=prot_P-wetherbeei_contig10471.1.1|Name=mRNA_P-wetherbeei_contig10471.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
MDSVQESLRVLSGAPPPAETLEVFRQGGENFEPAPQLIAVNERCDVFVLT
AGNVLAYTNLRGSRRRDGKAVPTDALFEVEFDAVEGETASSAPISGPARA
PLLKRIPRGLRIRALEFDVTGDKLLVWGDSFLGVVLLPPRDQYGSAIPRG
GRRAA
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mRNA from alignment at P-wetherbeei_contig10471:1465..2189+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10471.1.1 ID=mRNA_P-wetherbeei_contig10471.1.1|Name=mRNA_P-wetherbeei_contig10471.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=725bp|location=Sequence derived from alignment at P-wetherbeei_contig10471:1465..2189+ (Phaeothamnion wetherbeei SAG_119_79)
ACTGCGACGGTTAAAACCTTAGTTCCCCCCTCCCGCTTTGAATGGTATTT
TGAAGGTTCCTGCTGGATGTCCAGCACAATCCCAGGAGCCGTCCACACCT
CGGATCTTGGGGCTGTGCAATGAGAGCGTGAAGTGGCAGTCCTCGCAATG
CCATAAGTCGGCTGTGAGGCGCAGCAACGGCGGGAAGAGCCCTCAGAAAA
GAATTGGCAGATCCAAAGACTCGCACAGACTTTAGTCCCGTTTCTCACAC
AACGATATCCATGGATAGCGTGCAGGAGAGCTTGCGCGTGCTCTCAGGGG
CCCCGCCGCCCGCGGAAACCCTCGAAGTTTTTCGTCAGGGCGGTGAGAAC
TTCGAACCCGCGCCGCAGCTCATCGCCGTGAACGAGCGGTGCGATGTCTT
CGTCCTCACCGCCGGGAACGTCTTGGCGTACACGAACCTGCGGGGATCCC
GGCGCCGGGATGGGAAGGCGGTCCCCACCGACGCGCTCTTTGAGGTGGAG
TTCGATGCCGTGGAGGGCGAGACAGCATCTTCGGCGCCCATATCAGGCCC
CGCCCGCGCCCCACTCCTGAAACGCATCCCGCGCGGCTTGCGCATCCGCG
CGCTCGAATTTGACGTGACGGGCGACAAGCTGCTCGTCTGGGGCGACAGC
TTCCTCGGCGTTGTTCTCCTGCCGCCGCGGGACCAGTACGGCAGCGCCAT
CCCCCGGGGCGGCCGCCGCGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10471:1465..2189+

>mRNA_P-wetherbeei_contig10471.1.1 ID=mRNA_P-wetherbeei_contig10471.1.1|Name=mRNA_P-wetherbeei_contig10471.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig10471:1465..2189+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATAGCGTGCAGGAGAGCTTGCGCGTGCTCTCAGGGGCCCCGCCGCC
CGCGGAAACCCTCGAAGTTTTTCGTCAGGGCGGTGAGAACTTCGAACCCG
CGCCGCAGCTCATCGCCGTGAACGAGCGGTGCGATGTCTTCGTCCTCACC
GCCGGGAACGTCTTGGCGTACACGAACCTGCGGGGATCCCGGCGCCGGGA
TGGGAAGGCGGTCCCCACCGACGCGCTCTTTGAGGTGGAGTTCGATGCCG
TGGAGGGCGAGACAGCATCTTCGGCGCCCATATCAGGCCCCGCCCGCGCC
CCACTCCTGAAACGCATCCCGCGCGGCTTGCGCATCCGCGCGCTCGAATT
TGACGTGACGGGCGACAAGCTGCTCGTCTGGGGCGACAGCTTCCTCGGCG
TTGTTCTCCTGCCGCCGCGGGACCAGTACGGCAGCGCCATCCCCCGGGGC
GGCCGCCGCGCCGCC
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