mRNA_P-wetherbeei_contig1043.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1043.2.2
Unique NamemRNA_P-wetherbeei_contig1043.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1043.2.2 vs. uniprot
Match: D7G4T8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T8_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 1.070e-50
Identity = 127/289 (43.94%), Postives = 168/289 (58.13%), Query Frame = 2 
Query: 1601 DSNVLMVNNLPEALSEEHVRELMGPFGAVVKFNLLVDGDGRSKGTAAAEYADGEAAAMALAGLQDLAVGGARLMVQRVSAAVAAALLRPVKARPRPKSEEDLQEAEDGGQPSAVVRLTNVVEVKDLADEAEYKDILEDVTGECAQYGVVRKVEIPRPTVDDAEPPGCGMVFVEFADHVAAGHARKSLQGRTFAGKAVQACFFPADLFKQSVFALPSRERYEA------------------DEAXXXXXXXXXXXAADSLA-LSEKSGAVFVQFDEPPPDFDAMAAADFE 2410
            +S+VLMV NLP++L+++HVREL+ PFG + KFNLL D  G+SKGTA  EY D E   +AL+GL  L VG  +LMVQRV A +AA LL+PVK +       ++++ +D  +P+ VVRL+N+VEV++LAD+ EY +I  DV  EC QYG V+  E+PRP  D  E  G G +FVEF D   A   R +L GR F GKAV+A ++P DLF+  VF  PS E   A                   E            A D  A +   +G   +  D+ PPDFDAM    FE
Sbjct:  847 ESSVLMVMNLPDSLTDDHVRELLSPFGELKKFNLLKDSSGKSKGTAVFEYTDMENGQLALSGLSGLPVGKGKLMVQRVPAMMAATLLKPVKVK-------EVEDEQDNVEPTCVVRLSNMVEVEELADDTEYAEIKGDVVEECEQYGKVKSAEVPRPE-DGKEVLGLGEIFVEFEDVAGATKGRNALAGRKFGGKAVKATYYPLDLFQMGVFGKPSVEEAPAVTKEPEKKHPTPAEVQPGAEQGGAHGFVIVGEADDGPAPMPVSNGVGSIGDDDLPPDFDAMPVEAFE 1127
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BLAST of mRNA_P-wetherbeei_contig1043.2.2 vs. uniprot
Match: A0A836CGC8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC8_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.870e-39
Identity = 102/205 (49.76%), Postives = 127/205 (61.95%), Query Frame = 2 
Query: 1598 PDSNVLMVNNLPEALSEEHVRELMGPFGAVVKFNLLVDGDGRSKGTAAAEYADGEAAAMALAGLQDLAVGGARLMVQRVSAAVAAALLRPVKAR-PRPKSEEDLQEAEDGGQPSAVVRLTNVVEVKDLADEAEYKDILEDVTGECAQYGVVRKVEIPRPTVDDAEPPGCGMVFVEFADHVAAGHARKSLQGRTFAGKAVQACFFP 2209
            PDSNV+M+ NLP+AL+ E V+EL+ PFG   +FNLLVD  G+SKGTA  EY + EAA +A+ GL +L V   +LM QRV   VA  LLR  + + P P       E  D G  S VV L N+V + DL D+ EY DI+ DV  EC Q+G V+ V IPRP    AE PG G +FVEF D   A  A K L GRTF G  V+A ++P
Sbjct:  641 PDSNVVMIMNLPKALTAEQVQELVEPFGEFTRFNLLVDSYGKSKGTAVCEYTESEAADVAMKGLDNLPVADCKLMAQRVPKGVAETLLRKTEIKAPEPTP---YPEVPDDGT-SRVVCLHNMVLISDLEDDVEYGDIVNDVRDECGQFGQVKNVVIPRPDKSGAEVPGLGDIFVEFGDVKGAAAAIKGLAGRTFGGNIVKARYYP 841
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BLAST of mRNA_P-wetherbeei_contig1043.2.2 vs. uniprot
Match: D0MUA2_PHYIT (Splicing factor U2af large subunit, putative n=12 Tax=Phytophthora TaxID=4783 RepID=D0MUA2_PHYIT)

HSP 1 Score: 140 bits (354), Expect = 3.900e-31
Identity = 90/218 (41.28%), Postives = 125/218 (57.34%), Query Frame = 2 
Query: 1580 AAASAAPDSNVLMVNNLPEALSEEHVRELMGPFGAVVKFNLLVDG-DGRSKGTAAAEYADGEAAAMALAGLQDLAVGGARLMVQRVSAAVAAALLRPVKARPRPKSEEDLQEAEDGGQPSAVVRLTNVVEVKDLADEAEYKDILEDVTGECAQYGVVRKVEIPRPTVDDAEPPGCGMVFVEFADHVAAGHARKSLQGRTFAGKAVQACFFPADLFKQS 2230
            A + A    N L+++N+P  L+EE V+EL+ PFG +  F L+ D   G S G+A  EY D + AA A+ GL  L++GG  L VQR  A+ AAAL     A P     ED        QPSAV+++ N+V + +L D+ EY D+ EDV  EC ++G V  +EIPRP  D  E PG G ++V F     A  A K+L GR F G  V+  +FP D F+++
Sbjct:  391 AGSEAVSSGNRLIMSNIPVVLAEEQVKELVEPFGKLKSFTLVKDSATGASLGSALFEYEDSDVAAQAVEGLNGLSIGGILLSVQRQPASSAAALPSAAAANP-----ED--------QPSAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGGVTGMEIPRPK-DGEEVPGLGCIYVRFGKEEDAVSALKALNGRKFGGNIVKVTYFPVDKFEKN 594
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BLAST of mRNA_P-wetherbeei_contig1043.2.2 vs. uniprot
Match: A0A7R9QMV5_9ACAR (Splicing factor U2AF subunit (Fragment) n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9QMV5_9ACAR)

HSP 1 Score: 133 bits (334), Expect = 2.440e-29
Identity = 87/221 (39.37%), Postives = 125/221 (56.56%), Query Frame = 2 
Query: 1613 LMVNNLPEALSEEHVRELMGPFGAVVKFNLLVDG-DGRSKGTAAAEYADGEAAAMALAGLQDLAVGGARLMVQRVSAAV-----------AAALLRPVKARPRPKSEEDLQEAEDG-GQPSAVVRLTNVVEVKDLADEAEYKDILEDVTGECAQYGVVRKVEIPRPTVDDAEPPGCGMVFVEFADHVAAGHARKSLQGRTFAGKAVQACFFPADLFKQSVF 2236
            + +  LP  L+E+ V+EL+  FG +  FNL+ D   G SKG A  EYAD +    A+AGL  + +G  +L+VQR S              AAA+  PV+ +        LQ    G G P+ V+ L N+V  ++L D+ EY+DILED+  ECA+YG V+ +EIPRP ++D E PG G VF+EF + +    A++SL GR FA + V   FF  D + +  F
Sbjct:  241 IFIGGLPNYLNEDQVKELLMSFGQLRAFNLVKDSATGLSKGYAFCEYADTQITDQAIAGLNGMQLGDKKLIVQRASVGAKSGPLAAALSGAAAISAPVQIQV-----PGLQNVSGGIGNPTDVLCLMNMVVAEELNDDEEYEDILEDIREECAKYGAVKSLEIPRP-IEDVEVPGLGKVFIEFNNPIDCQKAQQSLTGRKFANRVVVTSFFDPDKYHRREF 455
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BLAST of mRNA_P-wetherbeei_contig1043.2.2 vs. uniprot
Match: A0A7N4NI18_SARHA (Splicing factor U2AF subunit n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=A0A7N4NI18_SARHA)

HSP 1 Score: 130 bits (327), Expect = 2.470e-28
Identity = 83/224 (37.05%), Postives = 127/224 (56.70%), Query Frame = 2 
Query: 1577 GAAASAAPDS-NVLMVNNLPEALSEEHVRELMGPFGAVVKFNLLVDGD-GRSKGTAAAEYADGEAAAMALAGLQDLAVGGARLMVQRVSAAVAAALLRPVKARPRPKSEEDL--QEAEDGGQPSAVVRLTNVVEVKDLADEAEYKDILEDVTGECAQYGVVRKVEIPRPTVDDAEPPGCGMVFVEFADHVAAGHARKSLQGRTFAGKAVQACFFPADLFKQSVF 2236
            GA +S  P+S + L +  +P  L+++ V+ L+  FGA+  FNL+ D   G SKG A  EYAD      A++GL  + +G  +L+VQR S     ++L  +   P       L   + ++ G P+ V+ L N++  ++L ++ EYK+I+EDV  EC++YGVV+ +EIPRPT D  E PGCG +FVEF        A + L GR FA + V   +   D F++  F
Sbjct:  249 GAVSSVVPNSAHKLYIGGIPSYLTDDQVKGLLNSFGALRAFNLIKDSTTGFSKGYAFCEYADINVTDQAISGLNGMQLGDKKLLVQRASVGAKNSMLSTLNQMPVTLQVPGLVSSQVQESGLPTEVLCLMNMLLPEELRNDDEYKEIMEDVRDECSKYGVVKSIEIPRPT-DGVEVPGCGKIFVEFVSTFDCQKAMQGLTGRKFANRVVVTKYCDLDTFRRRDF 471
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BLAST of mRNA_P-wetherbeei_contig1043.2.2 vs. uniprot
Match: A0A3M6VQ80_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQ80_9STRA)

HSP 1 Score: 132 bits (331), Expect = 8.670e-28
Identity = 83/213 (38.97%), Postives = 125/213 (58.69%), Query Frame = 2 
Query: 1604 SNVLMVNNLPEALSEEHVRELMGPFGAVVKFNLLVDG-DGRSKGTAAAEYADGEAAAMALAGLQDLAVGGARLMVQRVSAAVAAALLRPVKARPRPKSEEDLQEAEDGGQPSAVVRLTNVVEVKDLADEAEYKDILEDVTGECAQYGVVRKVEIPRPTVDDAEPPGCGMVFVEFADHVAAGHARKSLQGRTFAGKAVQACFFPADLFKQSVFA 2239
            S+ L+++N+P  L+E+ V+EL+ PFGA+  F L+ D   G S G+A  EY D + A  A+ GL  L++GG  L VQR   A  AAL         PK+   L++     QPSAV+++ N++ +++L D+ EY D+ EDV  EC ++G V  +EIPRP   + E PG G ++V F     A  A K+L GR F G  V+  ++P D F++  F+
Sbjct:  611 SHHLIMSNIPVVLAEDQVKELVEPFGALRSFTLVKDAATGASMGSALFEYEDEDVAVQAVEGLNGLSIGGILLSVQRQPLASGAAL------GILPKAASSLED-----QPSAVLKMANMISMEELRDDEEYADLAEDVEEECKRFGNVTGLEIPRPKTGE-EVPGLGCIYVCFGKKEDAASALKALNGRKFGGNIVKVTYYPEDKFEKREFS 811
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BLAST of mRNA_P-wetherbeei_contig1043.2.2 vs. uniprot
Match: G3HPQ0_CRIGR (Splicing factor U2AF subunit n=2 Tax=Cricetulus griseus TaxID=10029 RepID=G3HPQ0_CRIGR)

HSP 1 Score: 128 bits (321), Expect = 1.390e-27
Identity = 84/224 (37.50%), Postives = 123/224 (54.91%), Query Frame = 2 
Query: 1577 GAAASAAPDS-NVLMVNNLPEALSEEHVRELMGPFGAVVKFNLLVDG-DGRSKGTAAAEYADGEAAAMALAGLQDLAVGGARLMVQRVSAAVAAALLRPVKARPRPKSEEDLQ--EAEDGGQPSAVVRLTNVVEVKDLADEAEYKDILEDVTGECAQYGVVRKVEIPRPTVDDAEPPGCGMVFVEFADHVAAGHARKSLQGRTFAGKAVQACFFPADLFKQSVF 2236
            G  ++  PDS + L +  +P  L+++ V+EL+  FG +  FNL+ D   G SKG A  EY D  A   A+AGL  + +G  +L+VQR S     A L  +   P       L   + + GG P+ V+ L N+V  K+L D+ EY++I+EDV  EC++YG+V+ +EIPRP V+  E PGCG +FVEF        A + L GR +A K V   +   D +    F
Sbjct:  246 GVVSTVVPDSAHKLFIGGMPSYLNDDKVKELLTSFGTLKAFNLVKDSATGLSKGYAFCEYLDINATDQAIAGLNGMQLGDKKLIVQRASVGSKNATLSTINQTPVTVQVPGLMSSQVQMGGHPTEVLCLMNMVLPKELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VEGVEVPGCGNIFVEFTSVFDCQKAMQGLTGRRYANKVVVTKYCDPDSYHSRDF 468
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BLAST of mRNA_P-wetherbeei_contig1043.2.2 vs. uniprot
Match: A0A425CCS7_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CCS7_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.880e-27
Identity = 83/213 (38.97%), Postives = 125/213 (58.69%), Query Frame = 2 
Query: 1604 SNVLMVNNLPEALSEEHVRELMGPFGAVVKFNLLVDG-DGRSKGTAAAEYADGEAAAMALAGLQDLAVGGARLMVQRVSAAVAAALLRPVKARPRPKSEEDLQEAEDGGQPSAVVRLTNVVEVKDLADEAEYKDILEDVTGECAQYGVVRKVEIPRPTVDDAEPPGCGMVFVEFADHVAAGHARKSLQGRTFAGKAVQACFFPADLFKQSVFA 2239
            S+ L+++N+P  L+E+ V+EL+ PFGA+  F L+ D   G S G+A  EY D + A  A+ GL  L++GG  L VQR   A  AAL         PK+   L++     QPSAV+++ N++ +++L D+ EY D+ EDV  EC ++G V  +EIPRP   + E PG G ++V F     A  A K+L GR F G  V+  ++P D F++  F+
Sbjct: 1495 SHHLIMSNIPVVLAEDQVKELVEPFGALRSFTLVKDAATGASMGSALFEYEDEDVAVQAVEGLNGLSIGGILLSVQRQPLASGAAL------GILPKAASSLED-----QPSAVLKMANMISMEELRDDEEYADLAEDVEEECKRFGNVTGLEIPRPKTGE-EVPGLGCIYVCFGKKEDAASALKALNGRKFGGNIVKVTYYPEDKFEKREFS 1695
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BLAST of mRNA_P-wetherbeei_contig1043.2.2 vs. uniprot
Match: A0A0W8C5W0_PHYNI (Splicing factor U2AF 50 kDa subunit n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8C5W0_PHYNI)

HSP 1 Score: 125 bits (315), Expect = 2.010e-27
Identity = 81/210 (38.57%), Postives = 120/210 (57.14%), Query Frame = 2 
Query: 1613 LMVNNLPEALSEEHVRELMGPFGAVVKFNLLVD-GDGRSKGTAAAEYADGEAAAMALAGLQDLAVGGARLMVQRV---SAAVAAALLRPVKARPRPKSEEDLQEAEDGGQPSAVVRLTNVVEVKDLADEAEYKDILEDVTGECAQYGVVRKVEIPRPTVDDAEPPGCGMVFVEFADHVAAGHARKSLQGRTFAGKAVQACFFPADLFKQS 2230
            L+++N+P  L+E+ V+EL+ PFG +  F L+ D   G S G+A  EY D + A  A+ GL  L++GG  L VQR    +AA+ +A + P          ED        +PSAV+++ N+V + +L D+ EY D+ EDV  EC ++G V  +EIPRP  D  E PG G ++V F     A  A K+L GR F G  V+  +FP D F+++
Sbjct:  186 LIMSNIPVVLTEDQVKELVEPFGKLKSFTLVKDTATGASLGSALFEYEDKDVADQAVEGLNGLSIGGILLSVQRQPPNAAALPSAAVTP----------ED--------EPSAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGSVTGMEIPRPK-DGEEVPGLGCIYVRFGKEEDAVSALKALNGRKFGGNIVKVTYFPLDKFEKN 376
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BLAST of mRNA_P-wetherbeei_contig1043.2.2 vs. uniprot
Match: G4ZA34_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZA34_PHYSP)

HSP 1 Score: 129 bits (325), Expect = 2.270e-27
Identity = 83/210 (39.52%), Postives = 118/210 (56.19%), Query Frame = 2 
Query: 1613 LMVNNLPEALSEEHVRELMGPFGAVVKFNLLVD-GDGRSKGTAAAEYADGEAAAMALAGLQDLAVGGARLMVQRVSAAVAAALLRPVKARPRPKSEEDLQEAEDGGQPSAVVRLTNVVEVKDLADEAEYKDILEDVTGECAQYGVVRKVEIPRPTVDDAEPPGCGMVFVEFADHVAAGHARKSLQGRTFAGKAVQACFFPADLFKQSVFA 2239
            L+++N+P  L+E+ V+EL+ PFGA+  F L+ D   G S G+A  EY D    A A+ GL  L++GG  L VQ   A+ AA    P      P  E+         QPSAV+++ N+V + +L D+ EY D+ EDV  EC ++G V  +EIPRP  D  E PG G ++V F +   A  A K+L GR F G  V+  +FP D F +  F+
Sbjct:  444 LIMSNIPVVLTEDQVKELVEPFGALKSFTLVKDTATGASMGSALFEYEDDSVTAQAVEGLNGLSIGGILLSVQCQPASGAAL---PAAPGATPNFED---------QPSAVLKMANMVSIDELRDDDEYADLAEDVEEECKRFGNVTGLEIPRPK-DGEEVPGLGCIYVRFEEEKNAVDALKALNGRKFGGNIVKVTYFPLDKFDKQEFS 640
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1043.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4T8_ECTSI1.070e-5043.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CGC8_9STRA1.870e-3949.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D0MUA2_PHYIT3.900e-3141.28Splicing factor U2af large subunit, putative n=12 ... [more]
A0A7R9QMV5_9ACAR2.440e-2939.37Splicing factor U2AF subunit (Fragment) n=1 Tax=Op... [more]
A0A7N4NI18_SARHA2.470e-2837.05Splicing factor U2AF subunit n=1 Tax=Sarcophilus h... [more]
A0A3M6VQ80_9STRA8.670e-2838.97Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
G3HPQ0_CRIGR1.390e-2737.50Splicing factor U2AF subunit n=2 Tax=Cricetulus gr... [more]
A0A425CCS7_9STRA1.880e-2738.97Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A0W8C5W0_PHYNI2.010e-2738.57Splicing factor U2AF 50 kDa subunit n=1 Tax=Phytop... [more]
G4ZA34_PHYSP2.270e-2739.52Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1043contigP-wetherbeei_contig1043:3706..7607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4T8
Preferred namePELP1
PFAMsAAA_5,NUC202,RIX1,RRM_1
Model size2770
Max annot lvl2759|Eukaryota
KEGG koko:K12837,ko:K14572,ko:K16913
KEGG Pathwayko03008,ko03040,map03008,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000243,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008187,GO:0008380,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0030628,GO:0030684,GO:0030687,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031503,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033119,GO:0033120,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034660,GO:0036002,GO:0042254,GO:0042255,GO:0042273,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045934,GO:0045935,GO:0046483,GO:0046872,GO:0046907,GO:0048024,GO:0048025,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0071004,GO:0071010,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0089701,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1903311,GO:1903312,GO:1903320,GO:1903321,GO:1990904
Exons4
Evalue6.65e-57
EggNOG OGsCOG5271@1|root,KOG0120@1|root,KOG0120@2759|Eukaryota,KOG1808@2759|Eukaryota
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-20_000390.1
DescriptionNuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits
Cds size1950
COG categoryM
BRITEko00000,ko00001,ko03009,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1043.2.2prot_P-wetherbeei_contig1043.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1043 4662..7430 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185868.9989216-UTR-P-wetherbeei_contig1043:3705..37821683185868.9989216-UTR-P-wetherbeei_contig1043:3705..3782Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1043 3706..3782 +
1683185869.0079045-UTR-P-wetherbeei_contig1043:4095..46611683185869.0079045-UTR-P-wetherbeei_contig1043:4095..4661Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1043 4096..4661 +
1683185869.043059-UTR-P-wetherbeei_contig1043:7430..76071683185869.043059-UTR-P-wetherbeei_contig1043:7430..7607Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1043 7431..7607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185869.0150707-CDS-P-wetherbeei_contig1043:4661..50861683185869.0150707-CDS-P-wetherbeei_contig1043:4661..5086Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1043 4662..5086 +
1683185869.0242813-CDS-P-wetherbeei_contig1043:5524..65051683185869.0242813-CDS-P-wetherbeei_contig1043:5524..6505Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1043 5525..6505 +
1683185869.035337-CDS-P-wetherbeei_contig1043:6886..74301683185869.035337-CDS-P-wetherbeei_contig1043:6886..7430Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1043 6887..7430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1043.2.2

>prot_P-wetherbeei_contig1043.2.2 ID=prot_P-wetherbeei_contig1043.2.2|Name=mRNA_P-wetherbeei_contig1043.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=650bp
MVLRENPGISVTDAMKKLAVLRAAHLSVNPAAAAAPRPYADPVVAANLAT
AFGGGGGGGTNGIGSGSFAGLGGAGTDVKAADLERRSREAYIGGLPAGIT
KEQLEQFLAAAMGHMNLVLGHGSPITQTNVGPDGLYAFVEFRSAHECQGA
LRLNGIQCSNTTLRIGRPKNFTDAQMAAAKMGMVPSPPQPSPTVPLPGAS
AMPSFDVGCRTFASGAPYEAAVPASLPGISAAAAAALAAAMPSAGFAGAA
APAVAAAGSAEEPPLPTDPVAAAAAAAARVNARMRDLMGGGGGGSAALAA
GLGMPGGPGALGAAASAAPDSNVLMVNNLPEALSEEHVRELMGPFGAVVK
FNLLVDGDGRSKGTAAAEYADGEAAAMALAGLQDLAVGGARLMVQRVSAA
VAAALLRPVKARPRPKSEEDLQEAEDGGQPSAVVRLTNVVEVKDLADEAE
YKDILEDVTGECAQYGVVRKVEIPRPTVDDAEPPGCGMVFVEFADHVAAG
HARKSLQGRTFAGKAVQACFFPADLFKQSVFALPSRERYEADEAAKAAKA
AAARAAADSLALSEKSGAVFVQFDEPPPDFDAMAAADFEEDDFRGGGGGG
GGVKANGGAKANGADAMMDSGDNGGDRCGMKDEAMEDLPSVAVPEEDVD*
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mRNA from alignment at P-wetherbeei_contig1043:3706..7607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1043.2.2 ID=mRNA_P-wetherbeei_contig1043.2.2|Name=mRNA_P-wetherbeei_contig1043.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3902bp|location=Sequence derived from alignment at P-wetherbeei_contig1043:3706..7607+ (Phaeothamnion wetherbeei SAG_119_79)
GCCAGAGGTGCCTTTGGAGACAGCCTCTGCCTCCACGAGTCGCAGCCCGA
AGCGCGGCGCTTTGAGGGAAAAGCGTGGTCAGTTGCTTGAGTGCTTCCTA
CTTTTCAAGCTTAAACGGCTGCGGTGAAGCCGTTGCGCCCGGTGGTAGCT
CAGTCTTTCGAAAATAGCAAACTAGAAGATGCTGTAAGACCTTGTCTTCT
TCGCCGGTTTTAATTTACTTTAGCATGTCATAAACAACCTTTAGCCTCTT
CACTCGTGCGGGAAACCTAGGTGCAAGCGGTCTGCGTTCACGTCTGACAC
CTTTGTGCTTTTTTCCCAAACAGCCCCGTACGTCGAAACATAACACATTC
TCTTTGCATTTCTTTCACTCTACATGCTCGTGGCAAACAGCTCGGGAGAA
GTCTAGGGAGCGCTCGACGGGCAGGGACGGGAAAGGCACGCGCGAGCGCG
AGCGTTCTCGGGAACGCGACAGATGCTATGACAAGAAGGACGTGCGCCGT
CGCGAAGACTCGCGGGATTACGAGCGCGACCGCCGTCACGGGGACCGCCA
CCGCAGCGACCGCGACAGTCATCGGAGCCGAGACCATGGCCGCCACGGCG
ACCGTTATGGAAGCCGCTCCGGCCGGGACCACTCGCGCAGGGGTGCGAGC
CCGCCCCGGAGGACGCGCAGCCGGAGCCGGAGTCGGAGCCGCGCCCGCAA
GCGCGACCGCGGCAGCCGGGAGCGCGACCGCGACCGCAAGCGAAGCAGCC
AGGACCGCGATCGTAGCAGCCGCAACCGCGACCGGAGCAGCCGCGACCGC
GACCGCAGCGGTCGCGACGTGCCGGCGACGAAGGACTCGGACGTAGCAAA
TGGGAATGGCCACGCCCCGTTTTCGTCCTCGGCTTCGGCGGTGGCGGCGG
CGGCATTAAAGGATAACGGCAACGGCGACGACGACGGGCCGGAGTTCACG
CTGGAGATGGTGCTCCGCGAGAACCCGGGCATCAGCGTGACGGACGCCAT
GAAGAAGCTGGCGGTGCTGCGTGCCGCCCACCTATCGGTCAACCCGGCGG
CGGCGGCGGCGCCCCGTCCCTACGCCGACCCGGTCGTCGCCGCCAACCTC
GCGACCGCCTTCGGCGGCGGCGGCGGCGGCGGCACAAATGGCATCGGAAG
CGGCAGCTTCGCAGGGCTCGGCGGCGCGGGCACGGACGTGAAGGCGGCGG
ACCTGGAACGGCGGTCGCGGGAGGCATATATTGGAGGACTGCCGGCCGGC
ATCACCAAGGAGCAGCTGGAGCAGTTCCTGGCGGCGGCGATGGGCCACAT
GAACTTGGTGCTCGGGCACGGCAGCCCCATCACACAGACCAATGTCGGGC
CCGATGGCCTCTACGCCTTTGTTGAGTTCAGGTGCGCGTCTTGCTGTCGC
GTCAGCGGAGTCCTTCTTCGACGCGAGTCTTTCTTTTACACATGCTCTTC
CTCTTCCAGCAAGTTTGTCTCCCGTATTGAGCTTATCGTTCTTTGTTAAC
CTGGAGACTGGCTGCATAACCTGCTGTGATTCGAAAGTAATATGCTTCGG
CGGACACTACTTTCTTTCCTAGTGAGCCTTATTTACGAAAATGCTGTTGC
AGCGGAATAGCGGTGGAATGGCAGGTTTTTCGCGGACAGCAGATGACGGC
GGCGATGACAGAAGCCCGTTTTTCGGTCTCTCTTCACATCTCTAACATTG
GTGGGCTGTCTGGTGAAGCGCCGTTTCCGCAAGAGCCTCAGTGACAGTGA
TCCTGTACGTTTTACGATGCTCCTTTTCCCTCAAACTGCTTTTGGGGCCT
GGCACCACCTGGGCCTCAGGTCGGCGCACGAGTGCCAGGGCGCCTTGCGA
CTCAACGGGATTCAGTGCAGCAACACGACGCTGCGGATCGGGCGCCCCAA
GAACTTCACAGACGCGCAGATGGCGGCGGCGAAAATGGGCATGGTGCCCT
CGCCGCCGCAGCCATCGCCGACGGTGCCGCTGCCAGGCGCTTCCGCCATG
CCAAGCTTTGACGTCGGCTGCAGAACTTTTGCATCAGGGGCTCCGTACGA
GGCGGCTGTCCCCGCGTCGCTTCCTGGGATCTCTGCTGCAGCGGCAGCCG
CACTGGCTGCGGCGATGCCGTCGGCGGGTTTTGCCGGTGCCGCCGCCCCT
GCCGTCGCCGCCGCTGGTTCTGCGGAAGAGCCGCCCCTACCGACGGACCC
TGTGGCGGCGGCCGCGGCCGCGGCGGCGCGCGTGAACGCAAGGATGAGGG
ATCTCATGGGCGGCGGGGGCGGCGGCAGCGCTGCATTGGCGGCGGGGTTG
GGGATGCCAGGTGGTCCCGGAGCGTTGGGGGCGGCGGCGTCGGCGGCACC
CGACTCGAACGTGCTGATGGTGAACAACCTGCCGGAGGCGCTCTCGGAGG
AGCACGTGCGCGAGCTTATGGGTCCGTTTGGCGCCGTCGTCAAGTTCAAC
CTGCTGGTGGACGGCGACGGCAGGTCCAAGGGCACGGCCGCCGCTGAATA
CGCTGACGGTGAGGCGGCGGCGATGGCGCTGGCGGGCCTGCAGGACTTGG
CAGTGGGCGGCGCGCGGCTCATGGTGCAGCGCGTGTCGGCGGCCGTGGCG
GCGGCGCTGCTGCGGCCCGTCAAGGCGCGGCCGCGGCCCAAGAGCGAGGA
AGACCTGCAGGAGGCGGAGGACGGCGGGCAGCCGAGCGCCGTGGTGCGGC
TAACCAACGTCGTCGAGGTGAAGGACCTGGCGGACGAGGCCGAATACAAG
GACATTCTTGAGGATGTCACGGGCGAGTGTGCGCAGTACGGCGTCGTCAG
GTCAGTTTTCGGCATCCGGTTGGGTCTCGGTCTCGTTCTCTTTTTTGTTA
TTTTGGGAGTGGCTCGTCGTTTCATCGAACCCACCTGCTGCTGGCCATGA
AGCACCACTTCCTCCTTTCGAAATTTGGGCCGGCCCTGAGAGAAATCCAC
TGTGCGGCGTTTGTGGGCAGTAGGATAGCGCAGGCAAGTTCACAGGAAGG
ATATGATTGCATCGTTCAGACTGCGTGCAATCCAGGCAATAGCTGCTGCA
GCGATGTGGATCCCGATGTTGGCTTTCCGAAGTTTCCCTGCGCCCGCTGT
CCTTGACCTTTTGCCGGAGCGTGCGGCGGAACCTTGCTTTCACGCTTTCC
CATCGCCGCCGCTTCGCTTTCCGCTGTACAGGAAAGTGGAGATTCCGCGG
CCGACGGTGGACGACGCCGAGCCGCCGGGCTGCGGGATGGTCTTCGTCGA
ATTTGCCGACCACGTGGCGGCCGGCCACGCCCGTAAGTCCCTCCAGGGGC
GCACCTTCGCTGGCAAGGCGGTCCAGGCGTGCTTCTTCCCGGCGGACCTA
TTCAAGCAGAGCGTCTTCGCTCTGCCGTCGCGCGAGCGGTACGAAGCAGA
CGAGGCCGCCAAGGCGGCCAAGGCTGCGGCGGCGCGGGCAGCGGCGGACT
CGCTGGCGCTTAGCGAGAAGTCGGGGGCCGTGTTCGTGCAGTTTGATGAG
CCGCCGCCCGACTTTGACGCCATGGCCGCCGCCGACTTTGAGGAGGACGA
CTTTCGCGGCGGCGGCGGCGGCGGCGGCGGCGTGAAGGCGAATGGCGGCG
CAAAGGCGAACGGCGCCGACGCAATGATGGACAGCGGGGATAACGGCGGC
GACCGCTGTGGCATGAAAGACGAGGCGATGGAGGATTTGCCGTCCGTGGC
GGTTCCGGAGGAGGACGTCGATTGACGTTCGGCGACGTCCAGCACAATGG
GAGAATAAATTTCATTCCGGAGGCCGCGGCGGGACAGTGCTGCTCATCTT
GGGACAGCACACATAGCTCATCACGAATCTAACAGATCAATCGGTCCATT
CTTTTTCTCGTATCATTTACTGTGTTTACTCTCGAGCCGAGCAATTATTG
AT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1043:3706..7607+

>mRNA_P-wetherbeei_contig1043.2.2 ID=mRNA_P-wetherbeei_contig1043.2.2|Name=mRNA_P-wetherbeei_contig1043.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1950bp|location=Sequence derived from alignment at P-wetherbeei_contig1043:3706..7607+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCTCCGCGAGAACCCGGGCATCAGCGTGACGGACGCCATGAAGAA
GCTGGCGGTGCTGCGTGCCGCCCACCTATCGGTCAACCCGGCGGCGGCGG
CGGCGCCCCGTCCCTACGCCGACCCGGTCGTCGCCGCCAACCTCGCGACC
GCCTTCGGCGGCGGCGGCGGCGGCGGCACAAATGGCATCGGAAGCGGCAG
CTTCGCAGGGCTCGGCGGCGCGGGCACGGACGTGAAGGCGGCGGACCTGG
AACGGCGGTCGCGGGAGGCATATATTGGAGGACTGCCGGCCGGCATCACC
AAGGAGCAGCTGGAGCAGTTCCTGGCGGCGGCGATGGGCCACATGAACTT
GGTGCTCGGGCACGGCAGCCCCATCACACAGACCAATGTCGGGCCCGATG
GCCTCTACGCCTTTGTTGAGTTCAGGTCGGCGCACGAGTGCCAGGGCGCC
TTGCGACTCAACGGGATTCAGTGCAGCAACACGACGCTGCGGATCGGGCG
CCCCAAGAACTTCACAGACGCGCAGATGGCGGCGGCGAAAATGGGCATGG
TGCCCTCGCCGCCGCAGCCATCGCCGACGGTGCCGCTGCCAGGCGCTTCC
GCCATGCCAAGCTTTGACGTCGGCTGCAGAACTTTTGCATCAGGGGCTCC
GTACGAGGCGGCTGTCCCCGCGTCGCTTCCTGGGATCTCTGCTGCAGCGG
CAGCCGCACTGGCTGCGGCGATGCCGTCGGCGGGTTTTGCCGGTGCCGCC
GCCCCTGCCGTCGCCGCCGCTGGTTCTGCGGAAGAGCCGCCCCTACCGAC
GGACCCTGTGGCGGCGGCCGCGGCCGCGGCGGCGCGCGTGAACGCAAGGA
TGAGGGATCTCATGGGCGGCGGGGGCGGCGGCAGCGCTGCATTGGCGGCG
GGGTTGGGGATGCCAGGTGGTCCCGGAGCGTTGGGGGCGGCGGCGTCGGC
GGCACCCGACTCGAACGTGCTGATGGTGAACAACCTGCCGGAGGCGCTCT
CGGAGGAGCACGTGCGCGAGCTTATGGGTCCGTTTGGCGCCGTCGTCAAG
TTCAACCTGCTGGTGGACGGCGACGGCAGGTCCAAGGGCACGGCCGCCGC
TGAATACGCTGACGGTGAGGCGGCGGCGATGGCGCTGGCGGGCCTGCAGG
ACTTGGCAGTGGGCGGCGCGCGGCTCATGGTGCAGCGCGTGTCGGCGGCC
GTGGCGGCGGCGCTGCTGCGGCCCGTCAAGGCGCGGCCGCGGCCCAAGAG
CGAGGAAGACCTGCAGGAGGCGGAGGACGGCGGGCAGCCGAGCGCCGTGG
TGCGGCTAACCAACGTCGTCGAGGTGAAGGACCTGGCGGACGAGGCCGAA
TACAAGGACATTCTTGAGGATGTCACGGGCGAGTGTGCGCAGTACGGCGT
CGTCAGGAAAGTGGAGATTCCGCGGCCGACGGTGGACGACGCCGAGCCGC
CGGGCTGCGGGATGGTCTTCGTCGAATTTGCCGACCACGTGGCGGCCGGC
CACGCCCGTAAGTCCCTCCAGGGGCGCACCTTCGCTGGCAAGGCGGTCCA
GGCGTGCTTCTTCCCGGCGGACCTATTCAAGCAGAGCGTCTTCGCTCTGC
CGTCGCGCGAGCGGTACGAAGCAGACGAGGCCGCCAAGGCGGCCAAGGCT
GCGGCGGCGCGGGCAGCGGCGGACTCGCTGGCGCTTAGCGAGAAGTCGGG
GGCCGTGTTCGTGCAGTTTGATGAGCCGCCGCCCGACTTTGACGCCATGG
CCGCCGCCGACTTTGAGGAGGACGACTTTCGCGGCGGCGGCGGCGGCGGC
GGCGGCGTGAAGGCGAATGGCGGCGCAAAGGCGAACGGCGCCGACGCAAT
GATGGACAGCGGGGATAACGGCGGCGACCGCTGTGGCATGAAAGACGAGG
CGATGGAGGATTTGCCGTCCGTGGCGGTTCCGGAGGAGGACGTCGATTGA
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