mRNA_P-wetherbeei_contig10392.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10392.1.1
Unique NamemRNA_P-wetherbeei_contig10392.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig10392.1.1 vs. uniprot
Match: A0A6H5L6F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.890e-15
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    7 ELLTVEAQAQEYLVTEGFCCLIQELLTVSMPHGLG---RGRRAPGLWPYVDFVLADVLLPARERRHARPGERWRLVARALQV 243
            E+  VE++ + Y VTEGFCCLIQEL+   +P+ LG   R R A G+ PYV ++L  VL+P  E R A  GERWR+ AR LQV
Sbjct:   19 EMEQVESRERTYPVTEGFCCLIQELVQHDLPYNLGEKTRYRGASGIQPYVAYLLKCVLIP--ELRFADAGERWRVAARVLQV 98
[Close]
BLAST of mRNA_P-wetherbeei_contig10392.1.1 vs. uniprot
Match: D7FNG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG6_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 3.810e-15
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    7 ELLTVEAQAQEYLVTEGFCCLIQELLTVSMPHGLG---RGRRAPGLWPYVDFVLADVLLPARERRHARPGERWRLVARALQV 243
            E+  VE++ + Y VTEGFCCLIQEL+   +P+ LG   R R A G+ PYV ++L  VL+P  E R A  GERWR+ AR LQV
Sbjct:  100 EMEQVESRERTYPVTEGFCCLIQELVQHDLPYTLGEKTRYRGASGIQPYVAYLLKCVLIP--ELRFADAGERWRVAARVLQV 179
[Close]
BLAST of mRNA_P-wetherbeei_contig10392.1.1 vs. uniprot
Match: K8YXE5_NANGC (Nucleoporin 205-like protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YXE5_NANGC)

HSP 1 Score: 71.2 bits (173), Expect = 1.480e-12
Identity = 32/84 (38.10%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    1 RYELLTVEAQAQEYLVTEGFCCLIQELLTVSMPHGLGRGR-RAPGLWPYVDFVLADVLLPARERRHARPGERWRLVARALQVRV 249
            R+EL  VE++   + +TEGF  L+  LL   MP  LG  R R  G+WPYV++++ D+LLP   R+   P ++W++++  L+V +
Sbjct:  796 RFELEDVESKMGLFPITEGFLLLLVALLRADMPFDLGAARGRQDGVWPYVEYLIEDILLPLPARQFLYPAQKWKILSLGLRVLI 879
[Close]
BLAST of mRNA_P-wetherbeei_contig10392.1.1 vs. uniprot
Match: A0A4D9D928_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D928_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.730e-12
Identity = 32/84 (38.10%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    1 RYELLTVEAQAQEYLVTEGFCCLIQELLTVSMPHGLGRGR-RAPGLWPYVDFVLADVLLPARERRHARPGERWRLVARALQVRV 249
            R+EL  VE++   + +TEGF  L+  LL   MP  LG  R R  G+WPYV++++ D+LLP   R+   P ++W++++  L+V +
Sbjct:  796 RFELEDVESKMGLFPITEGFLLLLVALLRADMPFDLGAARGRQDGVWPYVEYLIEDILLPLPARQCLYPAQKWKILSLGLRVLI 879
[Close]
BLAST of mRNA_P-wetherbeei_contig10392.1.1 vs. uniprot
Match: A0A182IN51_9DIPT (Uncharacterized protein n=1 Tax=Anopheles atroparvus TaxID=41427 RepID=A0A182IN51_9DIPT)

HSP 1 Score: 66.6 bits (161), Expect = 6.240e-11
Identity = 29/79 (36.71%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:    7 ELLTVEAQAQEYLVTEGFCCLIQELLTVSMPHGLGRGRRAPGLWPYVDFVLADVLLPARERRHARPGERWRLVARALQV 243
            EL  VE++ + Y +T+     +  L+  +MP  LG G RAPG+ PY+ +V+  VLL    R +  P E+W+L  + LQ+
Sbjct:  678 ELEEVESRNETYPLTQAMLDFLHSLMRTAMPENLGEGSRAPGIHPYISYVVDTVLLRLFSRNYKYPAEKWQLAQKCLQI 756
[Close]
BLAST of mRNA_P-wetherbeei_contig10392.1.1 vs. uniprot
Match: W5JBM6_ANODA (Nuclear pore complex protein Nup205 n=2 Tax=Nyssorhynchus TaxID=44543 RepID=W5JBM6_ANODA)

HSP 1 Score: 65.5 bits (158), Expect = 1.590e-10
Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:    1 RYELLTVEAQAQEYLVTEGFCCLIQELLTVSMPHGLGRGRRAPGLWPYVDFVLADVLLPARERRHARPGERWRLVARALQV 243
            R EL  VE++ + Y +T+     +  L+  ++P  LG G+RAPG+ PY+ +V+  VLL    R +  P E+W+L  + LQ+
Sbjct:  716 RSELEEVESRNEAYPLTQAMLDFLAVLMRTTVPENLGEGKRAPGIAPYLSYVIDVVLLQVFSRNYKDPAEKWQLTQKCLQI 796
[Close]
BLAST of mRNA_P-wetherbeei_contig10392.1.1 vs. uniprot
Match: A0A084VN69_ANOSI (AGAP008090-PA-like protein n=1 Tax=Anopheles sinensis TaxID=74873 RepID=A0A084VN69_ANOSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.420e-9
Identity = 27/79 (34.18%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:    7 ELLTVEAQAQEYLVTEGFCCLIQELLTVSMPHGLGRGRRAPGLWPYVDFVLADVLLPARERRHARPGERWRLVARALQV 243
            EL  VE++ + + +T+     +  L+  ++P  LG G RAPG+ PY+ +V+  VLL    R +  P E+W+L  + LQ+
Sbjct:  692 ELEEVESRNETFPLTQAMLDFLYSLMRTAVPDNLGEGTRAPGVHPYLSYVIDTVLLRLFNRNYKNPAEKWQLAQKCLQI 770
[Close]
BLAST of mRNA_P-wetherbeei_contig10392.1.1 vs. uniprot
Match: A0A6A4V883_AMPAM (Nuclear pore complex protein Nup205 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4V883_AMPAM)

HSP 1 Score: 61.6 bits (148), Expect = 3.600e-9
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:    1 RYELLTVEAQAQEYLVTEGFCCLIQELLTVSMPHGLGRGRRAPGLWPYVDFVLADVLLPARERRHARPGERWRLVARALQV 243
            + EL  VEA+A+++  T  F  L+  L+   +P  LG G RAPG+ PYV FV+ DVLL    R +  P E++ +    L++
Sbjct:  659 KMELEEVEARAEQFPQTRAFLGLLSVLVEAGVPASLGAGLRAPGIHPYVAFVIHDVLLNFDSRAYKDPTEKYVVAGDCLEI 739
[Close]
BLAST of mRNA_P-wetherbeei_contig10392.1.1 vs. uniprot
Match: A0A182V211_ANOME (Uncharacterized protein n=16 Tax=Cellia TaxID=44534 RepID=A0A182V211_ANOME)

HSP 1 Score: 60.8 bits (146), Expect = 6.740e-9
Identity = 27/79 (34.18%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:    7 ELLTVEAQAQEYLVTEGFCCLIQELLTVSMPHGLGRGRRAPGLWPYVDFVLADVLLPARERRHARPGERWRLVARALQV 243
            EL  VE++ + + +T+    L+  L++ ++P  LG G RAPG+ PY+ +V+  VLL    R +    E+W+L  + LQ+
Sbjct:  683 ELEEVESRNETFPLTQAMLDLLSSLMSTAIPDDLGEGSRAPGIHPYLSYVVNTVLLRLFSRNYKDGAEKWQLAQKCLQI 761
[Close]
BLAST of mRNA_P-wetherbeei_contig10392.1.1 vs. uniprot
Match: A0A182S6P3_9DIPT (Uncharacterized protein n=1 Tax=Anopheles maculatus TaxID=74869 RepID=A0A182S6P3_9DIPT)

HSP 1 Score: 59.3 bits (142), Expect = 2.320e-8
Identity = 27/79 (34.18%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:    7 ELLTVEAQAQEYLVTEGFCCLIQELLTVSMPHGLGRGRRAPGLWPYVDFVLADVLLPARERRHARPGERWRLVARALQV 243
            EL  VE++ + + +T+    L+  L++ ++P  LG G RAPG+ PY+ +V+  VLL    R +    E+W+L  + LQ+
Sbjct:  169 ELEEVESRNELFPLTQAMLDLLAALMSTAIPDDLGEGSRAPGIHPYLSYVVNTVLLRLFSRNYKDGAEKWQLAQKCLQI 247
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10392.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5L6F6_9PHAE1.890e-1552.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNG6_ECTSI3.810e-1552.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K8YXE5_NANGC1.480e-1238.10Nucleoporin 205-like protein n=3 Tax=Monodopsidace... [more]
A0A4D9D928_9STRA2.730e-1238.10Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A182IN51_9DIPT6.240e-1136.71Uncharacterized protein n=1 Tax=Anopheles atroparv... [more]
W5JBM6_ANODA1.590e-1035.80Nuclear pore complex protein Nup205 n=2 Tax=Nyssor... [more]
A0A084VN69_ANOSI1.420e-934.18AGAP008090-PA-like protein n=1 Tax=Anopheles sinen... [more]
A0A6A4V883_AMPAM3.600e-938.27Nuclear pore complex protein Nup205 n=2 Tax=Amphib... [more]
A0A182V211_ANOME6.740e-934.18Uncharacterized protein n=16 Tax=Cellia TaxID=4453... [more]
A0A182S6P3_9DIPT2.320e-834.18Uncharacterized protein n=1 Tax=Anopheles maculatu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10392contigP-wetherbeei_contig10392:318..569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FNG6
Preferred nameNUP205
PFAMsNup192
Model size252
Max annot lvl2759|Eukaryota
KEGG koko:K14310
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000132,GO:0000226,GO:0000278,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006999,GO:0007010,GO:0007017,GO:0007049,GO:0007088,GO:0007163,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009629,GO:0009790,GO:0009792,GO:0009794,GO:0009987,GO:0010389,GO:0010467,GO:0010564,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0017038,GO:0017056,GO:0022402,GO:0022607,GO:0030010,GO:0031090,GO:0031224,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0034622,GO:0040001,GO:0040011,GO:0042330,GO:0042332,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044611,GO:0045184,GO:0045995,GO:0046822,GO:0046907,GO:0046931,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051028,GO:0051049,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051292,GO:0051293,GO:0051294,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0051983,GO:0060341,GO:0060623,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:1901987,GO:1901990,GO:1902749,GO:1902850,GO:1903047,GO:1903379,GO:2000026
Exons1
Evalue6.25e-16
EggNOG OGsKOG1835@1|root,KOG1835@2759|Eukaryota
Descriptionnuclear pore organization
Cds size252
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185867.136752-CDS-P-wetherbeei_contig10392:317..5691683185867.136752-CDS-P-wetherbeei_contig10392:317..569Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10392 318..569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10392.1.1prot_P-wetherbeei_contig10392.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10392 318..569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10392.1.1

>prot_P-wetherbeei_contig10392.1.1 ID=prot_P-wetherbeei_contig10392.1.1|Name=mRNA_P-wetherbeei_contig10392.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
RYELLTVEAQAQEYLVTEGFCCLIQELLTVSMPHGLGRGRRAPGLWPYVD
FVLADVLLPARERRHARPGERWRLVARALQVRV*
back to top

mRNA from alignment at P-wetherbeei_contig10392:318..569-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10392.1.1 ID=mRNA_P-wetherbeei_contig10392.1.1|Name=mRNA_P-wetherbeei_contig10392.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig10392:318..569- (Phaeothamnion wetherbeei SAG_119_79)
AGGTATGAACTACTGACGGTGGAGGCGCAAGCGCAAGAGTACCTCGTCAC
GGAGGGCTTTTGCTGCCTGATCCAGGAGCTCTTGACCGTGTCTATGCCGC
ATGGCCTCGGCCGCGGCCGCCGGGCGCCCGGCCTGTGGCCATACGTCGAC
TTTGTGCTGGCAGACGTGTTGCTGCCCGCCCGCGAGCGCCGCCACGCGCG
GCCCGGCGAGCGCTGGCGGCTCGTGGCGCGCGCCCTGCAGGTGCGTGTGT
GA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10392:318..569-

>mRNA_P-wetherbeei_contig10392.1.1 ID=mRNA_P-wetherbeei_contig10392.1.1|Name=mRNA_P-wetherbeei_contig10392.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig10392:318..569- (Phaeothamnion wetherbeei SAG_119_79)
AGGTATGAACTACTGACGGTGGAGGCGCAAGCGCAAGAGTACCTCGTCAC
GGAGGGCTTTTGCTGCCTGATCCAGGAGCTCTTGACCGTGTCTATGCCGC
ATGGCCTCGGCCGCGGCCGCCGGGCGCCCGGCCTGTGGCCATACGTCGAC
TTTGTGCTGGCAGACGTGTTGCTGCCCGCCCGCGAGCGCCGCCACGCGCG
GCCCGGCGAGCGCTGGCGGCTCGTGGCGCGCGCCCTGCAGGTGCGTGTGT
GA
back to top