mRNA_P-wetherbeei_contig10352.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10352.1.1
Unique NamemRNA_P-wetherbeei_contig10352.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10352.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10352contigP-wetherbeei_contig10352:2..762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size476
Hectar predicted targeting categoryother localisation
Exons2
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185865.1741755-UTR-P-wetherbeei_contig10352:1..911683185865.1741755-UTR-P-wetherbeei_contig10352:1..91Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10352 2..91 -
1683185865.1984236-UTR-P-wetherbeei_contig10352:751..7621683185865.1984236-UTR-P-wetherbeei_contig10352:751..762Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10352 752..762 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185865.1824107-CDS-P-wetherbeei_contig10352:91..1681683185865.1824107-CDS-P-wetherbeei_contig10352:91..168Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10352 92..168 -
1683185865.1901004-CDS-P-wetherbeei_contig10352:453..7511683185865.1901004-CDS-P-wetherbeei_contig10352:453..751Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10352 454..751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10352.1.1prot_P-wetherbeei_contig10352.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10352 92..751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10352.1.1

>prot_P-wetherbeei_contig10352.1.1 ID=prot_P-wetherbeei_contig10352.1.1|Name=mRNA_P-wetherbeei_contig10352.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
MDVARGEFLAISRSCGFDGRFDMKTKDAAYRGVCPCGGGAKKGAGGKSTK
LKEVKAGGASSASESEVAGAKKERSGRGSQCCGCEFLINFRARGANAPPG
EFGTVAITKADVRHVPRCLEQWMA*
back to top

mRNA from alignment at P-wetherbeei_contig10352:2..762-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10352.1.1 ID=mRNA_P-wetherbeei_contig10352.1.1|Name=mRNA_P-wetherbeei_contig10352.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=761bp|location=Sequence derived from alignment at P-wetherbeei_contig10352:2..762- (Phaeothamnion wetherbeei SAG_119_79)
TTCAGTCGGCGATGGATGTGGCGAGAGGTGAATTCCTGGCGATTTCCAGA
AGCTGCGGCTTCGACGGTCGATTTGATATGAAAACCAAAGACGCCGCCTA
CAGAGGGGTTTGCCCGTGCGGCGGGGGCGCGAAGAAAGGCGCCGGTGGCA
AGTCGACGAAACTGAAGGAGGTGAAGGCAGGCGGAGCGTCGTCGGCGAGC
GAAAGTGAAGTAGCAGGCGCAAAGAAAGAGAGAAGCGGGCGGGGGTCGCA
GTGCTGCGGCTGCGAGTTCTTGATCAACTTCAGGGCACGCGGTGCAAACG
CCCCGCCAGGTGAGCCGTCGATGGCCTTTGGCACTGGGCGTCGCCATTTC
GGGCAAGGCCTCCTGCTCTTCGTTGTTTCGCTTTCTTATTTCGGGTGTTT
GCTGTGCGCTTTGTTGTTTCGCTTTCTTTTTTATGGAGATGGGGCGAGGG
AATTGTGCCGACCTGCCGCGGCGGTCGCCGGCCGCTGGCATCGACTTTTC
TAAAGCCCCCTCCCAAAACCCCGCCCGCCCGCCCGCCCCCGCCGCGTTTG
ACCTGCCGTTTCACCGCCGGCTGCTCGCTTGTGTATTCCACCAGGGGAGT
TCGGAACCGTCGCAATCACCAAGGCCGATGTACGACACGTGCCGCGGTGC
TTGGAGCAGTGGATGGCCTAGTAGAAGAAGCAGCGCAAGCGGGACAAGGT
CTCCGAACAGGAGGGAGGAGGGCCGGCAGACGCGGATGGCCGCGTTTGCC
TCAGAGAGGAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10352:2..762-

>mRNA_P-wetherbeei_contig10352.1.1 ID=mRNA_P-wetherbeei_contig10352.1.1|Name=mRNA_P-wetherbeei_contig10352.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig10352:2..762- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATGTGGCGAGAGGTGAATTCCTGGCGATTTCCAGAAGCTGCGGCTT
CGACGGTCGATTTGATATGAAAACCAAAGACGCCGCCTACAGAGGGGTTT
GCCCGTGCGGCGGGGGCGCGAAGAAAGGCGCCGGTGGCAAGTCGACGAAA
CTGAAGGAGGTGAAGGCAGGCGGAGCGTCGTCGGCGAGCGAAAGTGAAGT
AGCAGGCGCAAAGAAAGAGAGAAGCGGGCGGGGGTCGCAGTGCTGCGGCT
GCGAGTTCTTGATCAACTTCAGGGCACGCGGTGCAAACGCCCCGCCAGGG
GAGTTCGGAACCGTCGCAATCACCAAGGCCGATGTACGACACGTGCCGCG
GTGCTTGGAGCAGTGGATGGCCTAG
back to top