mRNA_P-wetherbeei_contig10344.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10344.2.1
Unique NamemRNA_P-wetherbeei_contig10344.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10344.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10344contigP-wetherbeei_contig10344:1314..2364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size667
Hectar predicted targeting categorymitochondrion
Exons3
Cds size588
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185864.5466304-UTR-P-wetherbeei_contig10344:1313..13921683185864.5466304-UTR-P-wetherbeei_contig10344:1313..1392Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10344 1314..1392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185864.5560637-CDS-P-wetherbeei_contig10344:1392..17311683185864.5560637-CDS-P-wetherbeei_contig10344:1392..1731Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10344 1393..1731 +
1683185864.5647676-CDS-P-wetherbeei_contig10344:1821..19061683185864.5647676-CDS-P-wetherbeei_contig10344:1821..1906Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10344 1822..1906 +
1683185864.5734048-CDS-P-wetherbeei_contig10344:2200..23641683185864.5734048-CDS-P-wetherbeei_contig10344:2200..2364Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10344 2201..2364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10344.2.1prot_P-wetherbeei_contig10344.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10344 1393..2364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10344.2.1

>prot_P-wetherbeei_contig10344.2.1 ID=prot_P-wetherbeei_contig10344.2.1|Name=mRNA_P-wetherbeei_contig10344.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=196bp
MRRISALAGPRPGGRRNSVLDVARDAVSSAARNVTGAVQNVSESANAAAN
AAVGVIAVSTEQYALKKGLEYDKNKIKSLKLLMLYCVFLAVFLAVILLPE
DIGGSYDSSNAVQAALVETEWGVRSMFGDIGATGDIYYFLQTVMLPALFT
NAWYNGVSFPLNSTMAPPWFLDDTNLVLGAARLRQVREKKRDGGK*
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mRNA from alignment at P-wetherbeei_contig10344:1314..2364+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10344.2.1 ID=mRNA_P-wetherbeei_contig10344.2.1|Name=mRNA_P-wetherbeei_contig10344.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1051bp|location=Sequence derived from alignment at P-wetherbeei_contig10344:1314..2364+ (Phaeothamnion wetherbeei SAG_119_79)
AGGAGCTGTATTAGAAAATCAGCAATCTATCATGACAGCAAATTGAACAG
AATATTGCCGCCTCTTGTTCCTCGAAGCTATGCGCCGCATTTCTGCCCTC
GCCGGGCCGCGGCCTGGTGGGCGACGAAATTCGGTCCTCGACGTGGCCCG
CGATGCCGTCTCCAGCGCGGCAAGGAACGTCACCGGCGCTGTACAAAATG
TAAGCGAATCGGCCAATGCGGCCGCGAACGCCGCCGTGGGCGTCATAGCC
GTTAGCACGGAGCAGTACGCTCTCAAGAAGGGATTGGAGTACGACAAAAA
CAAGATCAAGAGCCTGAAGCTGCTCATGCTTTATTGTGTCTTTCTCGCGG
TCTTCCTGGCTGTTATCCTGTTGCCAGAGGACATCGGAGGGAGCTACGAT
TCGTCGAACGCAGTACAGGTGATCCATAGAATGGTGAAATGTGTACTCTT
CGCAAACGTAAAGATACTCACTGATCAGTTCATCCGTCGTTGCTCCCTTT
GGCCGCAGGCAGCACTGGTGGAAACAGAATGGGGAGTGCGATCGATGTTC
GGCGACATTGGGGCAACCGGCGACATATATTATTTCCTCCAAAGTGCGTG
GTAAACCGTTTTGTCAATGCTGGGTTAAATAACCGGGTGCTTCGTCTTAA
TGAGACGAAGTCCTTGCGTATGTGTTCAAATTTCTCTCCGCTGTCATAAT
TTTTTGTCCTTTTCAGTAATATCCCCCTGCATTCATCCTTCTCCAGCTCA
TTATATTCAGCTCTCACAACATGCTTCGGAAACGGCCATCCATGCTGTCT
ATTCTCTTCCTCACCCGCCGCCGTTGTCGCCACCTCCGGAGACCTAAATC
GGCTCCGCTGCCATTTACCCTGTCTGGGCAATGCCAGCCGTTATGCTGCC
AGCCCTTTTCACGAACGCATGGTACAACGGCGTCAGCTTTCCGCTCAACT
CAACAATGGCCCCGCCTTGGTTTCTCGACGACACCAACCTCGTGCTCGGG
GCGGCCCGGCTGCGGCAGGTGAGAGAGAAGAAAAGAGATGGGGGAAAGTA
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10344:1314..2364+

>mRNA_P-wetherbeei_contig10344.2.1 ID=mRNA_P-wetherbeei_contig10344.2.1|Name=mRNA_P-wetherbeei_contig10344.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=588bp|location=Sequence derived from alignment at P-wetherbeei_contig10344:1314..2364+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCGCATTTCTGCCCTCGCCGGGCCGCGGCCTGGTGGGCGACGAAA
TTCGGTCCTCGACGTGGCCCGCGATGCCGTCTCCAGCGCGGCAAGGAACG
TCACCGGCGCTGTACAAAATGTAAGCGAATCGGCCAATGCGGCCGCGAAC
GCCGCCGTGGGCGTCATAGCCGTTAGCACGGAGCAGTACGCTCTCAAGAA
GGGATTGGAGTACGACAAAAACAAGATCAAGAGCCTGAAGCTGCTCATGC
TTTATTGTGTCTTTCTCGCGGTCTTCCTGGCTGTTATCCTGTTGCCAGAG
GACATCGGAGGGAGCTACGATTCGTCGAACGCAGTACAGGCAGCACTGGT
GGAAACAGAATGGGGAGTGCGATCGATGTTCGGCGACATTGGGGCAACCG
GCGACATATATTATTTCCTCCAAACCGTTATGCTGCCAGCCCTTTTCACG
AACGCATGGTACAACGGCGTCAGCTTTCCGCTCAACTCAACAATGGCCCC
GCCTTGGTTTCTCGACGACACCAACCTCGTGCTCGGGGCGGCCCGGCTGC
GGCAGGTGAGAGAGAAGAAAAGAGATGGGGGAAAGTAG
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