mRNA_P-wetherbeei_contig10293.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10293.1.1
Unique NamemRNA_P-wetherbeei_contig10293.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10293.1.1 vs. uniprot
Match: D7FML5_ECTSI (Putative: similar to cytoplasmic dynein intermediate chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FML5_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 8.110e-34
Identity = 60/91 (65.93%), Postives = 75/91 (82.42%), Query Frame = 1
Query:    1 CEDRATTDLHWSPHHPELLLAAYSARGRGVDPAAVAGTGCYNDADGLVLVWSLAVQSRPEYVLTSQSPVLCARFHEFDSHLIFGSTYSGQV 273
            C++R+ TDL WSPHHPEL+LA+Y+ARG G+D  A + +  + DADGLVLVWS+A+Q RPEY L+SQSPVL ARFH FD+H+I G TYSGQV
Sbjct:  339 CQERSLTDLQWSPHHPELVLASYTARGHGLD--ATSSSALHTDADGLVLVWSMAMQHRPEYQLSSQSPVLTARFHPFDTHVIIGGTYSGQV 427          
BLAST of mRNA_P-wetherbeei_contig10293.1.1 vs. uniprot
Match: A0A836C896_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C896_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.850e-32
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 1
Query:    1 CEDRATTDLHWSPHHPELLLAAYSARGRGVD-PAAVAGTGCYNDA--DGLVLVWSLAVQSRPEYVLTSQSPVLCARFHEFDSHLIFGSTYSGQV 273
            C DRA TD+HWSPH+PELLL AYSA GRG +  +A+ G     DA  DGLVLVWSLA+ SRPE++L SQSP+L ARFHEFD+HL+ G +YSGQV
Sbjct:  111 CGDRAITDVHWSPHYPELLLVAYSASGRGQNLESALLGAPAAGDAHPDGLVLVWSLALPSRPEFILYSQSPILTARFHEFDAHLVVGGSYSGQV 204          
BLAST of mRNA_P-wetherbeei_contig10293.1.1 vs. uniprot
Match: A0A4P9Z315_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z315_9FUNG)

HSP 1 Score: 95.5 bits (236), Expect = 6.370e-21
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 CEDRATTDLHWSPHHPELLLAAYSARGRGVDPAAVAGTGCYNDADGLVLVWSLAVQSRPEYVLTSQSPVLCARFHEFDSHLIFGSTYSGQV 273
            C+ RATTD+HWSP HPEL++AAY+     +           N+ DGLVLVW++ +  RPE+   +QS VL ARF +F ++L+ G TYSGQ+
Sbjct:  283 CQHRATTDVHWSPKHPELVVAAYNKNAMAI-----------NEPDGLVLVWNVHLVERPEFTFHAQSDVLSARFSDFHANLVIGGTYSGQI 362          
BLAST of mRNA_P-wetherbeei_contig10293.1.1 vs. uniprot
Match: A0A2P2I7P5_9CRUS (Cytoplasmic dynein 1 intermediate chain 2 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I7P5_9CRUS)

HSP 1 Score: 85.1 bits (209), Expect = 2.290e-17
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 CEDRATTDLHWSPHHPELLLAAYSARGRGVDPAAVAGTGCYNDADGLVLVWSLAVQSRPEYVLTSQSPVLCARFHEFDSHLIFGSTYSGQV 273
            C  R+ T + WSP HPEL L +Y++    V           +  DGLV++WSL + SRPE V T Q+ VL A+FH  ++HLIFG T+SGQ+
Sbjct:   85 CSGRSVTSIDWSPLHPELFLTSYASSTDEV---------LSDSPDGLVIIWSLRLPSRPERVFTCQAAVLTAQFHPKNAHLIFGGTFSGQI 166          
BLAST of mRNA_P-wetherbeei_contig10293.1.1 vs. uniprot
Match: A0A6A7FZX7_9CRUS (Cytoplasmic dynein 1 intermediate chain 2-like isoform X4 n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FZX7_9CRUS)

HSP 1 Score: 85.1 bits (209), Expect = 2.840e-17
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 CEDRATTDLHWSPHHPELLLAAYSARGRGVDPAAVAGTGCYNDADGLVLVWSLAVQSRPEYVLTSQSPVLCARFHEFDSHLIFGSTYSGQV 273
            C  R+ T + WSP HPEL L +Y++    V           +  DGLV++WSL + SRPE V T Q+ VL A+FH  ++HLIFG T+SGQ+
Sbjct:  293 CSGRSVTSIDWSPLHPELFLTSYASSTDEV---------LSDSPDGLVIIWSLRLPSRPERVFTCQAAVLTAQFHPKNAHLIFGGTFSGQI 374          
BLAST of mRNA_P-wetherbeei_contig10293.1.1 vs. uniprot
Match: A0A8J1W1E4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1W1E4_9DINO)

HSP 1 Score: 83.6 bits (205), Expect = 9.850e-17
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1
Query:    7 DRATTDLHWSPHHPELLLAAYSARGRGVDPAAVAGTGCYNDADGLVLVWSLAVQSRPEYVLTSQSPVLCARFHEFDSHLIFGSTYSGQV 273
            DR TTD+ WSPH PEL  A+Y  +               +D +G+V VW+LA+Q+RPE+V T+ S VL  RF +F+  L  GSTYSG +
Sbjct:  281 DRTTTDVQWSPHFPELFCASYGPKKNAT----------LSDDEGVVCVWNLALQNRPEFVFTAGSQVLSVRFDKFNPALYLGSTYSGSI 359          
BLAST of mRNA_P-wetherbeei_contig10293.1.1 vs. uniprot
Match: A0A1Y2GI44_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GI44_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 1.620e-15
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 1
Query:    4 EDRATTDLHWSPHHPELLLAAYSARGRGVDPAAVAGTGCYNDADGLVLVWSLAVQSRPEYVLTSQSPVLCARFHEFDSHLIFGSTYSGQV 273
            ++R+ TD+ WS  HPEL++++Y+      +P AV      N+ DG+V VW++ +  RPE+V  SQS VL  RF +F  +LI G TYSGQ+
Sbjct:  255 KNRSVTDVGWSTKHPELIVSSYNK-----NPLAV------NEPDGIVCVWNVHLDDRPEFVFHSQSDVLTVRFSDFHPNLIIGGTYSGQI 333          
BLAST of mRNA_P-wetherbeei_contig10293.1.1 vs. uniprot
Match: A0A484DZZ2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZZ2_BRELC)

HSP 1 Score: 79.7 bits (195), Expect = 2.220e-15
Identity = 47/104 (45.19%), Postives = 57/104 (54.81%), Query Frame = 1
Query:   10 RATTDLHWSPHHPELLLAAYSARGRGVDPA----------------AVAGTGCYNDADGLVLVWSLAVQSRPEYVLTSQSPVLCARFHEFDSHLIFGSTYSGQV 273
            RA TD+  SP +PEL L AYSARG   D A                 VA T   +  +G+VL+WS A+ SRPEY  T  S V  A F+ FD H+I G TYSGQ+
Sbjct:  255 RAVTDVDVSPFYPELTLVAYSARGFVEDEAKDGSRSSQWDTMGNSATVALTDVASTMEGVVLLWSTALPSRPEYRFTCHSQVTSACFNPFDRHIIIGGTYSGQI 358          
BLAST of mRNA_P-wetherbeei_contig10293.1.1 vs. uniprot
Match: M5GEQ2_DACPD (WD40 repeat-like protein n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5GEQ2_DACPD)

HSP 1 Score: 78.6 bits (192), Expect = 5.680e-15
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    4 EDRATTDLHWSPHHPELLLAAYSARGRGVDPAAVAGTGCYNDADGLVLVWSLAVQSRPEYVLTSQ-SPVLCARFHEFDSHLIFGSTYSGQV 273
            ++R+ TD+ WS   PEL +AAY+      +P+A+      ND DG+VLVW++ +  RPE+VL SQ S VL  RF  + S+LIFG TYSG++
Sbjct:  293 KNRSVTDVDWSHKFPELCVAAYNK-----NPSAL------NDPDGVVLVWNMHLLERPEFVLHSQQSDVLAVRFSPYQSNLIFGGTYSGEI 372          
BLAST of mRNA_P-wetherbeei_contig10293.1.1 vs. uniprot
Match: A0A397GQ61_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GQ61_9GLOM)

HSP 1 Score: 78.2 bits (191), Expect = 7.700e-15
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 1
Query:    4 EDRATTDLHWSPHHPELLLAAYSARGRGVDPAAVAGTGCYNDADGLVLVWSLAVQSRPEYVLTSQSPVLCARFHEFDSHLIFGSTYSGQV 273
            ++R+ TD++WS  +PEL++++Y+      +P A+      N+ DG+VLVWSL +  RPEY+  SQS VL   F EF   +I G TYSGQ+
Sbjct:  268 KNRSVTDVNWSHKNPELVVSSYNK-----NPIAM------NEPDGVVLVWSLRLLERPEYIFHSQSDVLTTSFSEFHPTIIIGGTYSGQI 346          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10293.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FML5_ECTSI8.110e-3465.93Putative: similar to cytoplasmic dynein intermedia... [more]
A0A836C896_9STRA1.850e-3265.96WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A4P9Z315_9FUNG6.370e-2147.25WD40-repeat-containing domain protein n=1 Tax=Sync... [more]
A0A2P2I7P5_9CRUS2.290e-1745.05Cytoplasmic dynein 1 intermediate chain 2 (Fragmen... [more]
A0A6A7FZX7_9CRUS2.840e-1745.05Cytoplasmic dynein 1 intermediate chain 2-like iso... [more]
A0A8J1W1E4_9DINO9.850e-1744.94Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A1Y2GI44_9FUNG1.620e-1543.33WD40-repeat-containing domain protein n=1 Tax=Lobo... [more]
A0A484DZZ2_BRELC2.220e-1545.19Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
M5GEQ2_DACPD5.680e-1546.15WD40 repeat-like protein n=1 Tax=Dacryopinax primo... [more]
A0A397GQ61_9GLOM7.700e-1543.33Uncharacterized protein n=1 Tax=Diversispora epiga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10293contigP-wetherbeei_contig10293:1612..2188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FML5
PFAMsWD40
Model size282
Max annot lvl2759|Eukaryota
KEGG koko:K10415
KEGG Pathwayko04145,ko04962,ko05132,map04145,map04962,map05132
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005856,GO:0005868,GO:0005875,GO:0005938,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007097,GO:0007127,GO:0008150,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0022402,GO:0022414,GO:0030286,GO:0030473,GO:0030705,GO:0030863,GO:0030981,GO:0030989,GO:0032781,GO:0032991,GO:0035974,GO:0043085,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045503,GO:0045504,GO:0046907,GO:0048285,GO:0050790,GO:0051179,GO:0051234,GO:0051321,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0061982,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0072384,GO:0099111,GO:0099568,GO:0140013,GO:1902494,GO:1903046,GO:2000574,GO:2000576,GO:2000580,GO:2000582
Exons2
Evalue1.33e-34
EggNOG OGsKOG1587@1|root,KOG1587@2759|Eukaryota
Descriptiondynein heavy chain binding
Cds size282
COG categoryS
BRITEko00000,ko00001,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185862.2641716-CDS-P-wetherbeei_contig10293:1611..17631683185862.2641716-CDS-P-wetherbeei_contig10293:1611..1763Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10293 1612..1763 +
1683185862.2740078-CDS-P-wetherbeei_contig10293:2058..21881683185862.2740078-CDS-P-wetherbeei_contig10293:2058..2188Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10293 2059..2188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10293.1.1prot_P-wetherbeei_contig10293.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10293 1612..2188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10293.1.1

>prot_P-wetherbeei_contig10293.1.1 ID=prot_P-wetherbeei_contig10293.1.1|Name=mRNA_P-wetherbeei_contig10293.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
CEDRATTDLHWSPHHPELLLAAYSARGRGVDPAAVAGTGCYNDADGLVLV
WSLAVQSRPEYVLTSQSPVLCARFHEFDSHLIFGSTYSGQVGC*
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mRNA from alignment at P-wetherbeei_contig10293:1612..2188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10293.1.1 ID=mRNA_P-wetherbeei_contig10293.1.1|Name=mRNA_P-wetherbeei_contig10293.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=577bp|location=Sequence derived from alignment at P-wetherbeei_contig10293:1612..2188+ (Phaeothamnion wetherbeei SAG_119_79)
TGCGAGGACCGGGCGACGACGGACCTCCACTGGTCGCCGCACCACCCGGA GCTGCTGCTGGCTGCCTACAGCGCCCGCGGACGTGGGGTGGACCCGGCAG CGGTGGCCGGCACCGGATGCTACAACGACGCGGACGGTCTCGTCCTCGTC TGGTGAGATTCATGGCTTTGCTGCAGTGGTCAAAAAGCGAAGCACGCAGA AAAGGCAATGTGTTACATTTTGACCACTGCTGGGTTTTCAGTCAAGCCAT ATTTCCTGCATTGTCTCTTGGGGAACCCTGTGTGCACCAATATTGCCTTC TCATCACTGTCCGGACCACCGCGACCACCGCTGCTTCCCCCTATCGCCGC CGGCGCTGCAATCGCTGGTGCTGCCGGCCCTTGCCACCGATACCACACTC TCCTTGGCTTCCTTGGGCGCCGGCCTCGCTCGGAACACTCAACGCAGGTC TCTGGCGGTGCAGTCACGGCCGGAGTACGTGCTAACGTCGCAGTCGCCGG TGCTGTGCGCGCGATTCCACGAGTTTGACAGCCACCTCATCTTCGGTTCG ACGTATTCGGGCCAGGTAGGGTGTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10293:1612..2188+

>mRNA_P-wetherbeei_contig10293.1.1 ID=mRNA_P-wetherbeei_contig10293.1.1|Name=mRNA_P-wetherbeei_contig10293.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig10293:1612..2188+ (Phaeothamnion wetherbeei SAG_119_79)
TGCGAGGACCGGGCGACGACGGACCTCCACTGGTCGCCGCACCACCCGGA
GCTGCTGCTGGCTGCCTACAGCGCCCGCGGACGTGGGGTGGACCCGGCAG
CGGTGGCCGGCACCGGATGCTACAACGACGCGGACGGTCTCGTCCTCGTC
TGGTCTCTGGCGGTGCAGTCACGGCCGGAGTACGTGCTAACGTCGCAGTC
GCCGGTGCTGTGCGCGCGATTCCACGAGTTTGACAGCCACCTCATCTTCG
GTTCGACGTATTCGGGCCAGGTAGGGTGTTAG
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