mRNA_P-wetherbeei_contig10243.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10243.2.1
Unique NamemRNA_P-wetherbeei_contig10243.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10243.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10243contigP-wetherbeei_contig10243:1163..2384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size985
Hectar predicted targeting categoryother localisation
Exons2
Cds size984
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.833183-CDS-P-wetherbeei_contig10243:1163..12291683185860.833183-CDS-P-wetherbeei_contig10243:1163..1229Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10243 1164..1229 -
1683185860.8405597-CDS-P-wetherbeei_contig10243:1466..23841683185860.8405597-CDS-P-wetherbeei_contig10243:1466..2384Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10243 1467..2384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10243.2.1prot_P-wetherbeei_contig10243.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10243 1164..2384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10243.2.1

>prot_P-wetherbeei_contig10243.2.1 ID=prot_P-wetherbeei_contig10243.2.1|Name=mRNA_P-wetherbeei_contig10243.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=328bp
RLRAGGANRGDGGGDDYDSNEFDDIGHDGGGGDREGALDADYGAYHDDND
GRHSDRGSVDGGDDGGGGVGEGRYHHNAEGGYGSSDEEFARAAASHGVGG
GGNFGRFGAAGDDAEMARLMELAVLMAGGGEGGGGYHDEDHYDNDGYGDG
NGYDSYGGYGDSFGEAGSHDGHEGHGGGYSDGQGDDGYGSGHGGEGYGGG
HDGVEYGGGQGGGGGYGSGGGHGGAEIAFAAMLAGIMAGPQGGMPDFGGG
NVGGGGGGSGAAGEDRRSRGRRDVAAARREATNSSVDGYSNGGGLSRGEA
GSAAATAAPFSAQSVDGLARSLDGMQLS
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mRNA from alignment at P-wetherbeei_contig10243:1163..2384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10243.2.1 ID=mRNA_P-wetherbeei_contig10243.2.1|Name=mRNA_P-wetherbeei_contig10243.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1222bp|location=Sequence derived from alignment at P-wetherbeei_contig10243:1163..2384- (Phaeothamnion wetherbeei SAG_119_79)
CGCCTCCGTGCCGGCGGCGCTAATCGTGGCGATGGGGGTGGTGATGACTA
CGACAGCAACGAGTTCGATGATATCGGCCACGACGGCGGTGGCGGCGACA
GAGAAGGTGCACTGGATGCCGACTATGGCGCCTACCACGACGACAATGAC
GGCCGCCACAGCGACAGGGGCTCTGTCGATGGTGGCGACGACGGCGGCGG
CGGCGTGGGCGAGGGCCGCTATCACCACAACGCAGAGGGCGGCTACGGGT
CTTCCGACGAGGAGTTTGCCCGCGCGGCAGCAAGCCACGGTGTTGGCGGT
GGCGGTAACTTCGGGCGGTTTGGCGCCGCTGGCGACGACGCAGAGATGGC
GAGGCTCATGGAGCTCGCGGTTCTGATGGCTGGCGGCGGGGAAGGCGGCG
GCGGCTACCACGACGAAGATCATTATGACAACGACGGTTACGGCGATGGT
AACGGCTACGACAGTTACGGCGGTTATGGCGACAGCTTCGGCGAGGCTGG
CAGCCACGACGGCCACGAAGGCCACGGCGGCGGTTACAGCGACGGTCAAG
GCGACGACGGGTACGGCAGCGGCCACGGCGGCGAAGGATACGGCGGCGGC
CATGACGGCGTGGAATATGGCGGTGGCCAGGGCGGCGGTGGCGGCTACGG
CAGCGGCGGCGGCCATGGCGGCGCCGAAATTGCTTTTGCCGCAATGCTCG
CCGGCATCATGGCTGGCCCGCAGGGCGGCATGCCTGATTTTGGCGGCGGC
AACGTTGGTGGCGGCGGCGGCGGCAGCGGAGCAGCGGGAGAAGACCGCAG
GTCTCGCGGACGCCGCGACGTTGCGGCGGCGCGGCGAGAGGCCACCAATA
GCTCTGTGGACGGCTACAGCAACGGTGGCGGCTTGTCTAGAGGAGAAGCG
GGAAGCGCCGCCGCGACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCGTCGTCCTTCCGGACGACCAGCGGCCGCCCCACGGGACCGG
CCGCCGCGGTGGGGGCTCGCGACGCCCCGGCGAGGCAGCGCCATCGCATG
CCACGGCAGACCCGCGGATCACACAGAAAGGGCGCCGCTTCCGACAGCCG
CGCATTCGGCTCCGGCGACGGCAGCAGCACCCCGCCGCCCGTGCCGCCGC
CGCAGGCGGCGCCATTCTCAGCGCAGTCCGTGGACGGCCTTGCCCGTTCC
CTGGACGGCATGCAACTCAGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10243:1163..2384-

>mRNA_P-wetherbeei_contig10243.2.1 ID=mRNA_P-wetherbeei_contig10243.2.1|Name=mRNA_P-wetherbeei_contig10243.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=984bp|location=Sequence derived from alignment at P-wetherbeei_contig10243:1163..2384- (Phaeothamnion wetherbeei SAG_119_79)
CGCCTCCGTGCCGGCGGCGCTAATCGTGGCGATGGGGGTGGTGATGACTA
CGACAGCAACGAGTTCGATGATATCGGCCACGACGGCGGTGGCGGCGACA
GAGAAGGTGCACTGGATGCCGACTATGGCGCCTACCACGACGACAATGAC
GGCCGCCACAGCGACAGGGGCTCTGTCGATGGTGGCGACGACGGCGGCGG
CGGCGTGGGCGAGGGCCGCTATCACCACAACGCAGAGGGCGGCTACGGGT
CTTCCGACGAGGAGTTTGCCCGCGCGGCAGCAAGCCACGGTGTTGGCGGT
GGCGGTAACTTCGGGCGGTTTGGCGCCGCTGGCGACGACGCAGAGATGGC
GAGGCTCATGGAGCTCGCGGTTCTGATGGCTGGCGGCGGGGAAGGCGGCG
GCGGCTACCACGACGAAGATCATTATGACAACGACGGTTACGGCGATGGT
AACGGCTACGACAGTTACGGCGGTTATGGCGACAGCTTCGGCGAGGCTGG
CAGCCACGACGGCCACGAAGGCCACGGCGGCGGTTACAGCGACGGTCAAG
GCGACGACGGGTACGGCAGCGGCCACGGCGGCGAAGGATACGGCGGCGGC
CATGACGGCGTGGAATATGGCGGTGGCCAGGGCGGCGGTGGCGGCTACGG
CAGCGGCGGCGGCCATGGCGGCGCCGAAATTGCTTTTGCCGCAATGCTCG
CCGGCATCATGGCTGGCCCGCAGGGCGGCATGCCTGATTTTGGCGGCGGC
AACGTTGGTGGCGGCGGCGGCGGCAGCGGAGCAGCGGGAGAAGACCGCAG
GTCTCGCGGACGCCGCGACGTTGCGGCGGCGCGGCGAGAGGCCACCAATA
GCTCTGTGGACGGCTACAGCAACGGTGGCGGCTTGTCTAGAGGAGAAGCG
GGAAGCGCCGCCGCGACGGCGGCGCCATTCTCAGCGCAGTCCGTGGACGG
CCTTGCCCGTTCCCTGGACGGCATGCAACTCAGC
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