mRNA_P-wetherbeei_contig10223.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10223.4.1
Unique NamemRNA_P-wetherbeei_contig10223.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10223.4.1 vs. uniprot
Match: A0A3C2B0F7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B0F7_9ACTN)

HSP 1 Score: 131 bits (330), Expect = 2.960e-38
Identity = 66/85 (77.65%), Postives = 76/85 (89.41%), Query Frame = 1
Query:    1 NDSDAEAHRDRVVEAAMAAGQR-TPSPSNSQELGLRVGDDVEHPSFGEGVIIDITGQGDKAEATIRFRDVGTKHLSLAWAPLKKL 252
            +D  A+ HR+RVVEAA+ AG+R TPSPSNSQELGL+VGDDVEHPSFGEGVI+ I G+GD+AEA+IRF  VGTKHLSLAWAPLKKL
Sbjct:    8 DDMGADWHRERVVEAAINAGRRNTPSPSNSQELGLKVGDDVEHPSFGEGVILSIRGEGDRAEASIRFAGVGTKHLSLAWAPLKKL 92          
BLAST of mRNA_P-wetherbeei_contig10223.4.1 vs. uniprot
Match: A0A7X9KIQ9_9ACTN (DNA helicase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KIQ9_9ACTN)

HSP 1 Score: 135 bits (340), Expect = 4.240e-35
Identity = 66/84 (78.57%), Postives = 76/84 (90.48%), Query Frame = 1
Query:    4 DSDAEAHRDRVVEAAMAAGQR-TPSPSNSQELGLRVGDDVEHPSFGEGVIIDITGQGDKAEATIRFRDVGTKHLSLAWAPLKKL 252
            D D + HR+RVV+AA+AAG+R  P+PSNSQELGLR GDDVEHP+FGEGVII+I GQGDKAEATIRFR+ GTKHLSLAWAPLK+L
Sbjct:  844 DDDVDWHRERVVDAALAAGRRHEPAPSNSQELGLRTGDDVEHPAFGEGVIIEIRGQGDKAEATIRFREAGTKHLSLAWAPLKRL 927          
BLAST of mRNA_P-wetherbeei_contig10223.4.1 vs. uniprot
Match: A0A6I3F4Y1_9ACTN (DNA helicase n=4 Tax=root TaxID=1 RepID=A0A6I3F4Y1_9ACTN)

HSP 1 Score: 134 bits (336), Expect = 1.360e-34
Identity = 66/85 (77.65%), Postives = 78/85 (91.76%), Query Frame = 1
Query:    1 NDSDAEAHRDRVVEAAMAAGQRTPSPSNSQELGLRVGDDVEHPSFGEGVIIDITGQGDKAEATIRFRDVGTKHLSLAWAPLKKLS 255
            +D  +E+HR+RVVEAAM+AG R P+ +NSQELGLRVGDDVEHP+FGEGVI++I GQGDKAEATIRFR VGTKHLSLAWAPLK++S
Sbjct:  677 DDFGSESHRERVVEAAMSAG-RQPTQANSQELGLRVGDDVEHPAFGEGVILEIRGQGDKAEATIRFRGVGTKHLSLAWAPLKRIS 760          
BLAST of mRNA_P-wetherbeei_contig10223.4.1 vs. uniprot
Match: A0A6I3WXZ6_9ACTN (DNA helicase n=2 Tax=root TaxID=1 RepID=A0A6I3WXZ6_9ACTN)

HSP 1 Score: 131 bits (330), Expect = 9.090e-34
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 1
Query:    1 NDSDAEAHRDRVVEAAMAAGQR-TPSPSNSQELGLRVGDDVEHPSFGEGVIIDITGQGDKAEATIRFRDVGTKHLSLAWAPLKKL 252
            N   A AHR+RVV+AA+AAG+  +P PSN+Q++GLRVGDDVEHPSFGEGVII+I G G+KAEATIRFRDVGTKHL+LAWAPLKKL
Sbjct:  700 NSEAAIAHRERVVDAALAAGKALSPQPSNAQQIGLRVGDDVEHPSFGEGVIINIEGSGEKAEATIRFRDVGTKHLALAWAPLKKL 784          
BLAST of mRNA_P-wetherbeei_contig10223.4.1 vs. uniprot
Match: A0A7K0VI46_9ACTN (DNA helicase n=4 Tax=root TaxID=1 RepID=A0A7K0VI46_9ACTN)

HSP 1 Score: 129 bits (325), Expect = 4.280e-33
Identity = 65/81 (80.25%), Postives = 73/81 (90.12%), Query Frame = 1
Query:   13 AEAHRDRVVEAAMAAGQR-TPSPSNSQELGLRVGDDVEHPSFGEGVIIDITGQGDKAEATIRFRDVGTKHLSLAWAPLKKL 252
            AEAHR+RVV+AA+ AG+R  P P+NSQ L LRVGDDVEHPSFGEGVII+I G G+KAEATIRFRDVGTKHL+LAWAPLKKL
Sbjct:  688 AEAHRERVVDAAINAGKRLAPQPANSQLLALRVGDDVEHPSFGEGVIINIEGSGEKAEATIRFRDVGTKHLALAWAPLKKL 768          
BLAST of mRNA_P-wetherbeei_contig10223.4.1 vs. uniprot
Match: A0A6N2DGV1_9ACTN (DNA helicase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DGV1_9ACTN)

HSP 1 Score: 129 bits (325), Expect = 4.520e-33
Identity = 63/82 (76.83%), Postives = 73/82 (89.02%), Query Frame = 1
Query:   10 DAEAHRDRVVEAAMAAGQRT-PSPSNSQELGLRVGDDVEHPSFGEGVIIDITGQGDKAEATIRFRDVGTKHLSLAWAPLKKL 252
            D +AHRDRVV+AA+AAG+R  P PSNSQELGLR+GDDV HP+FGEGVIIDI+G G+KAEATI F  VGTKHL+LAWAPLKK+
Sbjct: 1033 DGDAHRDRVVDAALAAGRRNAPEPSNSQELGLRIGDDVVHPAFGEGVIIDISGTGEKAEATINFAGVGTKHLALAWAPLKKV 1114          
BLAST of mRNA_P-wetherbeei_contig10223.4.1 vs. uniprot
Match: A0A7W0L0X0_9ACTN (DNA helicase II n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0L0X0_9ACTN)

HSP 1 Score: 117 bits (293), Expect = 9.400e-33
Identity = 54/80 (67.50%), Postives = 70/80 (87.50%), Query Frame = 1
Query:   16 EAHRDRVVEAAMAAGQRTPSP--SNSQELGLRVGDDVEHPSFGEGVIIDITGQGDKAEATIRFRDVGTKHLSLAWAPLKK 249
            +AHRDR+V+AA+A+G+RT +P  S++ +LGLRVGDDVEHP+FGEGVIID+ G G+ AEAT+ F  +GTKHL+LAWAPLKK
Sbjct:    1 DAHRDRIVDAAIASGRRTGAPVQSDAHDLGLRVGDDVEHPAFGEGVIIDLRGHGESAEATVNFSGIGTKHLALAWAPLKK 80          
BLAST of mRNA_P-wetherbeei_contig10223.4.1 vs. uniprot
Match: A0A7K1B1L7_9ACTN (DNA helicase n=2 Tax=root TaxID=1 RepID=A0A7K1B1L7_9ACTN)

HSP 1 Score: 128 bits (321), Expect = 1.570e-32
Identity = 59/84 (70.24%), Postives = 74/84 (88.10%), Query Frame = 1
Query:    1 NDSDAEAHRDRVVEAAMAAGQRTPSPSNSQELGLRVGDDVEHPSFGEGVIIDITGQGDKAEATIRFRDVGTKHLSLAWAPLKKL 252
            +D  AEAHR+RVVEAA+ AG+  P+PS ++ LGL+VGDDVEHP+FGEG+I++I G+GD+AEAT+RF  VGTKHLSLAWAPLKKL
Sbjct: 1055 DDDAAEAHRERVVEAALRAGRSQPTPSGAESLGLQVGDDVEHPTFGEGIILEIRGEGDRAEATVRFPGVGTKHLSLAWAPLKKL 1138          
BLAST of mRNA_P-wetherbeei_contig10223.4.1 vs. uniprot
Match: A0A539E9H3_9ACTN (DNA helicase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E9H3_9ACTN)

HSP 1 Score: 125 bits (315), Expect = 9.670e-32
Identity = 57/84 (67.86%), Postives = 73/84 (86.90%), Query Frame = 1
Query:    1 NDSDAEAHRDRVVEAAMAAGQRTPSPSNSQELGLRVGDDVEHPSFGEGVIIDITGQGDKAEATIRFRDVGTKHLSLAWAPLKKL 252
            +D  AEAHR+RVVEAA+ AG+  P+PS ++ +GLR+GDDV HP+FGEGVI+++ G GD+AEATIRFR+VGTKHLSLAWAPL +L
Sbjct:  677 DDDAAEAHRERVVEAALRAGRSQPTPSGAEAIGLRMGDDVSHPTFGEGVIVEVRGDGDRAEATIRFREVGTKHLSLAWAPLTRL 760          
BLAST of mRNA_P-wetherbeei_contig10223.4.1 vs. uniprot
Match: A0A7Y2EVR1_9ACTN (DNA helicase n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y2EVR1_9ACTN)

HSP 1 Score: 124 bits (311), Expect = 3.510e-31
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 1
Query:   16 EAHRDRVVEAAMA-AGQRTPSPSNSQELGLRVGDDVEHPSFGEGVIIDITGQGDKAEATIRFRDVGTKHLSLAWAPLKKLS 255
            EAHRDRVVEAAM  A +  P PSNSQELGLR+GD V+HPSFG GVIIDI+G+G+KAEATI F  VGTKHL+LAWAPLKK++
Sbjct: 1070 EAHRDRVVEAAMEFAKKHAPEPSNSQELGLRIGDGVDHPSFGAGVIIDISGEGEKAEATINFAGVGTKHLALAWAPLKKIT 1150          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10223.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C2B0F7_9ACTN2.960e-3877.65Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7X9KIQ9_9ACTN4.240e-3578.57DNA helicase n=2 Tax=Actinobacteria TaxID=201174 R... [more]
A0A6I3F4Y1_9ACTN1.360e-3477.65DNA helicase n=4 Tax=root TaxID=1 RepID=A0A6I3F4Y1... [more]
A0A6I3WXZ6_9ACTN9.090e-3476.47DNA helicase n=2 Tax=root TaxID=1 RepID=A0A6I3WXZ6... [more]
A0A7K0VI46_9ACTN4.280e-3380.25DNA helicase n=4 Tax=root TaxID=1 RepID=A0A7K0VI46... [more]
A0A6N2DGV1_9ACTN4.520e-3376.83DNA helicase n=1 Tax=Ilumatobacter sp. TaxID=19674... [more]
A0A7W0L0X0_9ACTN9.400e-3367.50DNA helicase II n=1 Tax=Acidimicrobiia bacterium T... [more]
A0A7K1B1L7_9ACTN1.570e-3270.24DNA helicase n=2 Tax=root TaxID=1 RepID=A0A7K1B1L7... [more]
A0A539E9H3_9ACTN9.670e-3267.86DNA helicase n=1 Tax=Acidimicrobiaceae bacterium T... [more]
A0A7Y2EVR1_9ACTN3.510e-3175.31DNA helicase n=1 Tax=Ilumatobacter sp. TaxID=19674... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10223contigP-wetherbeei_contig10223:2081..2338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1313172.YM304_36150
Preferred namepcrA
PFAMsUvrD-helicase,UvrD_C
Model size258
Max annot lvl84992|Acidimicrobiia
KEGG koko:K03657
KEGG Pathwayko03420,ko03430,map03420,map03430
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.97e-26
EggNOG OGsCOG0210@1|root,COG0210@2|Bacteria,2GISS@201174|Actinobacteria,4CMS6@84992|Acidimicrobiia
EC3.6.4.12
DescriptionUvrD-like helicase C-terminal domain
Cds size258
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185859.937591-CDS-P-wetherbeei_contig10223:2080..23381683185859.937591-CDS-P-wetherbeei_contig10223:2080..2338Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10223 2081..2338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10223.4.1prot_P-wetherbeei_contig10223.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10223 2081..2338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10223.4.1

>prot_P-wetherbeei_contig10223.4.1 ID=prot_P-wetherbeei_contig10223.4.1|Name=mRNA_P-wetherbeei_contig10223.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
NDSDAEAHRDRVVEAAMAAGQRTPSPSNSQELGLRVGDDVEHPSFGEGVI
IDITGQGDKAEATIRFRDVGTKHLSLAWAPLKKLS*
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mRNA from alignment at P-wetherbeei_contig10223:2081..2338-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10223.4.1 ID=mRNA_P-wetherbeei_contig10223.4.1|Name=mRNA_P-wetherbeei_contig10223.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig10223:2081..2338- (Phaeothamnion wetherbeei SAG_119_79)
AACGACAGCGACGCCGAGGCGCACCGTGATCGCGTCGTCGAAGCGGCGAT GGCCGCTGGTCAGCGCACGCCGAGCCCGTCGAACTCACAGGAGCTCGGGC TGCGTGTCGGCGACGATGTCGAGCATCCCTCGTTCGGGGAAGGCGTCATC ATCGACATCACCGGGCAGGGTGACAAGGCGGAAGCGACCATCCGCTTCCG CGACGTCGGCACGAAGCACCTGTCGCTCGCCTGGGCTCCGCTCAAGAAGC TGTCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10223:2081..2338-

>mRNA_P-wetherbeei_contig10223.4.1 ID=mRNA_P-wetherbeei_contig10223.4.1|Name=mRNA_P-wetherbeei_contig10223.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig10223:2081..2338- (Phaeothamnion wetherbeei SAG_119_79)
AACGACAGCGACGCCGAGGCGCACCGTGATCGCGTCGTCGAAGCGGCGAT
GGCCGCTGGTCAGCGCACGCCGAGCCCGTCGAACTCACAGGAGCTCGGGC
TGCGTGTCGGCGACGATGTCGAGCATCCCTCGTTCGGGGAAGGCGTCATC
ATCGACATCACCGGGCAGGGTGACAAGGCGGAAGCGACCATCCGCTTCCG
CGACGTCGGCACGAAGCACCTGTCGCTCGCCTGGGCTCCGCTCAAGAAGC
TGTCATGA
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