mRNA_P-wetherbeei_contig10198.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10198.1.1
Unique NamemRNA_P-wetherbeei_contig10198.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10198.1.1 vs. uniprot
Match: A0A7X9KGC6_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KGC6_9ACTN)

HSP 1 Score: 234 bits (597), Expect = 8.410e-78
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 1 
Query:    1 MTNDTPTLQLAVWDDPLAANGLQTDTDDALIYLPPFLGPTSSLVLHRLSRCLTTGTGRVWSIEDLAATFGVGASQMRASLARLERFGMIRTVGGRTEVRTRVPALAARHVERMPAYLAA 357
            MTNDTPTLQLAVWDDPLAANGLQTDTDDALIYLPPFLGPTSSLVLHRLSRCLTTGTGRVWSIEDLAATFGVGASQMRASLARLERFGMIRTVGGRTEVRTRVPALAARH+ERMPAYLAA
Sbjct:    1 MTNDTPTLQLAVWDDPLAANGLQTDTDDALIYLPPFLGPTSSLVLHRLSRCLTTGTGRVWSIEDLAATFGVGASQMRASLARLERFGMIRTVGGRTEVRTRVPALAARHIERMPAYLAA 119
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BLAST of mRNA_P-wetherbeei_contig10198.1.1 vs. uniprot
Match: A0A6I3MRQ0_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3MRQ0_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 1.870e-5
Identity = 40/122 (32.79%), Postives = 61/122 (50.00%), Query Frame = 1 
Query:    7 NDTPTLQLAVWDDPLA-ANGLQTDTDDALIYLPPFLGPTSSLVLHRL-SRCLTTGTGRVWSIEDLAATFGVG-----ASQMRASLARLERFGMIRTVGGRTEVRTRVPALAARHVERMPAYL 351
            +D+ TL +  W DP+  + G +  +D    Y    LGPTS+ +L RL S       G   ++ + AA  G+             + RL  FG+ +       VRTR+PAL+ARHV+R+P +L
Sbjct:    9 HDSETLVVYPWLDPVVDSTGFEVRSDYVEHYWLGILGPTSTWLLRRLVSGFDHYPDGYELNLPETAAALGLNYRTDKECPFTRGIDRLVMFGVAQKYSYGLAVRTRIPALSARHVQRLPQHL 130
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10198.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7X9KGC6_9ACTN8.410e-7899.16Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A6I3MRQ0_9ACTN1.870e-532.79Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10198contigP-wetherbeei_contig10198:113..472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size360
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185858.430517-CDS-P-wetherbeei_contig10198:112..4721683185858.430517-CDS-P-wetherbeei_contig10198:112..472Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10198 113..472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10198.1.1prot_P-wetherbeei_contig10198.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10198 113..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10198.1.1

>prot_P-wetherbeei_contig10198.1.1 ID=prot_P-wetherbeei_contig10198.1.1|Name=mRNA_P-wetherbeei_contig10198.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
MTNDTPTLQLAVWDDPLAANGLQTDTDDALIYLPPFLGPTSSLVLHRLSR
CLTTGTGRVWSIEDLAATFGVGASQMRASLARLERFGMIRTVGGRTEVRT
RVPALAARHVERMPAYLAAI
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mRNA from alignment at P-wetherbeei_contig10198:113..472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10198.1.1 ID=mRNA_P-wetherbeei_contig10198.1.1|Name=mRNA_P-wetherbeei_contig10198.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig10198:113..472+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCAACGACACCCCCACCTTGCAGCTTGCTGTGTGGGACGACCCACT
TGCCGCCAACGGGCTGCAGACCGACACCGACGATGCGCTGATCTATCTTC
CGCCGTTCCTCGGCCCGACCTCGAGCCTCGTGTTGCATCGTTTGTCTCGA
TGCTTGACGACGGGCACTGGTCGTGTCTGGTCGATCGAGGATCTCGCCGC
CACGTTCGGTGTCGGCGCGTCGCAGATGCGCGCCTCGCTCGCCCGCTTGG
AACGGTTCGGGATGATCCGCACTGTCGGCGGCCGGACTGAGGTCCGCACC
CGCGTCCCGGCACTCGCCGCCCGCCACGTCGAGCGGATGCCCGCCTACCT
CGCCGCGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10198:113..472+

>mRNA_P-wetherbeei_contig10198.1.1 ID=mRNA_P-wetherbeei_contig10198.1.1|Name=mRNA_P-wetherbeei_contig10198.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig10198:113..472+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCAACGACACCCCCACCTTGCAGCTTGCTGTGTGGGACGACCCACT
TGCCGCCAACGGGCTGCAGACCGACACCGACGATGCGCTGATCTATCTTC
CGCCGTTCCTCGGCCCGACCTCGAGCCTCGTGTTGCATCGTTTGTCTCGA
TGCTTGACGACGGGCACTGGTCGTGTCTGGTCGATCGAGGATCTCGCCGC
CACGTTCGGTGTCGGCGCGTCGCAGATGCGCGCCTCGCTCGCCCGCTTGG
AACGGTTCGGGATGATCCGCACTGTCGGCGGCCGGACTGAGGTCCGCACC
CGCGTCCCGGCACTCGCCGCCCGCCACGTCGAGCGGATGCCCGCCTACCT
CGCCGCGATC
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