mRNA_P-wetherbeei_contig10195.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10195.1.1
Unique NamemRNA_P-wetherbeei_contig10195.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10195.1.1 vs. uniprot
Match: A0A6H5KYR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYR5_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 9.840e-20
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:   10 EAETVAVVGLLAACVRGSPHCRQRLRGLRSHRALYRCLLGMLGPNSSAELVTRALSALTRLVAGDELEERVFQRGNAEQTAAVAFNGLL 276
            + + + V+ L AAC RGSPH RQ ++GLR  R L+R LLG+LGP     +V RAL ALTR++AGD LE +VF RGNA +TA++  + LL
Sbjct:  311 QTDLMVVLDLFAACARGSPHFRQYVKGLRRKRELFRRLLGLLGPMCDGRIVVRALCALTRVLAGDPLEGKVFDRGNALETASLVIDNLL 399
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BLAST of mRNA_P-wetherbeei_contig10195.1.1 vs. uniprot
Match: D8LJ54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ54_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.350e-19
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:   28 VVGLLAACVRGSPHCRQRLRGLRSHRALYRCLLGMLGPNSSAELVTRALSALTRLVAGDELEERVFQRGNAEQTAAVAFNGLL 276
            V+ L AAC RGSPH RQ ++GLR  R L+R LLG+LGP    ++V RAL ALTR++AGD LE +VF RGNA +TA++  + LL
Sbjct:    3 VLDLFAACARGSPHFRQYVKGLRRKRELFRRLLGLLGPMCDGKIVVRALCALTRVLAGDPLEGKVFDRGNALETASLVIDNLL 85
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BLAST of mRNA_P-wetherbeei_contig10195.1.1 vs. uniprot
Match: A0A835YU78_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU78_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.720e-12
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   88 GLRSHRALYRCLLGMLGPNSSAELVTRALSALTRLVAGDELEERVFQRGNAEQTAAVAFNGLL 276
            GL + +AL+RCL+G LGP +  +LV R+LSALTR +AGD+LE +VF+  NA QTA +A   LL
Sbjct:  137 GLLARKALFRCLMGFLGPQNGTQLVARSLSALTRALAGDQLETKVFEPNNATQTATLAVVKLL 199
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10195.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KYR5_9PHAE9.840e-2052.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ54_ECTSI1.350e-1956.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YU78_9STRA3.720e-1255.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10195contigP-wetherbeei_contig10195:676..951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog9258.ENSOANP00000014065
Preferred nameKIAA1524
Model size276
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0007276,GO:0007283,GO:0008150,GO:0008284,GO:0016020,GO:0019953,GO:0022414,GO:0032501,GO:0032504,GO:0042127,GO:0042802,GO:0042803,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0046983,GO:0048232,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050794,GO:0051704,GO:0065007,GO:0071944,GO:2000177,GO:2000179
Exons1
Evalue8.17e-05
EggNOG OGs2CN1J@1|root,2QTAP@2759|Eukaryota,38GIX@33154|Opisthokonta,3BHDB@33208|Metazoa,3CTBN@33213|Bilateria,48731@7711|Chordata,48YXB@7742|Vertebrata,3J3F6@40674|Mammalia
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_004810.1
Descriptionpositive regulation of neural precursor cell proliferation
Cds size276
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185858.4070883-CDS-P-wetherbeei_contig10195:675..9511683185858.4070883-CDS-P-wetherbeei_contig10195:675..951Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10195 676..951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10195.1.1prot_P-wetherbeei_contig10195.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10195 676..951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10195.1.1

>prot_P-wetherbeei_contig10195.1.1 ID=prot_P-wetherbeei_contig10195.1.1|Name=mRNA_P-wetherbeei_contig10195.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
PADEAETVAVVGLLAACVRGSPHCRQRLRGLRSHRALYRCLLGMLGPNSS
AELVTRALSALTRLVAGDELEERVFQRGNAEQTAAVAFNGLL
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mRNA from alignment at P-wetherbeei_contig10195:676..951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10195.1.1 ID=mRNA_P-wetherbeei_contig10195.1.1|Name=mRNA_P-wetherbeei_contig10195.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig10195:676..951+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCGGACGAAGCCGAGACGGTGGCAGTGGTCGGACTGCTGGCGGCATG
TGTGCGGGGCAGCCCGCACTGCCGGCAGCGGCTGCGCGGCCTCCGCAGCC
ACCGCGCGCTGTATCGCTGCCTGCTGGGCATGCTGGGGCCCAACAGCTCG
GCGGAGCTCGTGACGCGCGCGCTTTCTGCGCTGACACGCCTCGTCGCGGG
TGACGAGCTCGAAGAGCGCGTCTTCCAACGCGGCAACGCGGAGCAGACCG
CCGCCGTCGCCTTTAACGGGCTCTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10195:676..951+

>mRNA_P-wetherbeei_contig10195.1.1 ID=mRNA_P-wetherbeei_contig10195.1.1|Name=mRNA_P-wetherbeei_contig10195.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig10195:676..951+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCGGACGAAGCCGAGACGGTGGCAGTGGTCGGACTGCTGGCGGCATG
TGTGCGGGGCAGCCCGCACTGCCGGCAGCGGCTGCGCGGCCTCCGCAGCC
ACCGCGCGCTGTATCGCTGCCTGCTGGGCATGCTGGGGCCCAACAGCTCG
GCGGAGCTCGTGACGCGCGCGCTTTCTGCGCTGACACGCCTCGTCGCGGG
TGACGAGCTCGAAGAGCGCGTCTTCCAACGCGGCAACGCGGAGCAGACCG
CCGCCGTCGCCTTTAACGGGCTCTTG
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