mRNA_P-wetherbeei_contig10194.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10194.1.2
Unique NamemRNA_P-wetherbeei_contig10194.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10194.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10194contigP-wetherbeei_contig10194:391..2227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1545
Hectar predicted targeting categoryother localisation
Exons2
Cds size1542
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185858.3698292-CDS-P-wetherbeei_contig10194:390..13081683185858.3698292-CDS-P-wetherbeei_contig10194:390..1308Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10194 391..1308 +
1683185858.3791046-CDS-P-wetherbeei_contig10194:1601..22251683185858.3791046-CDS-P-wetherbeei_contig10194:1601..2225Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10194 1602..2225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10194.1.2prot_P-wetherbeei_contig10194.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10194 391..2225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10194.1.2

>prot_P-wetherbeei_contig10194.1.2 ID=prot_P-wetherbeei_contig10194.1.2|Name=mRNA_P-wetherbeei_contig10194.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=514bp
RCVKLKRPCGGERPQCRRCALALSATPVKCRYSGTKRRPTERFPGAGEGA
ASAAAAAANAALAASRVSLSASGAVGLTGVQQRFLQSFLASFGETIPFGC
ATSALIASLFDSSAAAASVRRLGAGSAGLSSSSKSPRADGGRSGRGGGGD
VGGDGCDSGGSRACSNSGGSKGDGAGAAAASTREALQRGILFGVLAVGAL
LSGDCLDASEHLDLMLRSNCHMQRALQLLDSCESDSGGGGSAGRSAGGSD
GGVGASSNRVMGIPEVRVTSQVAAAAEEVPVDALLCVLQLLEGIYFLLSG
KADLFVECLQHAVNSFRLAWASFAPEAATTTPPPPAAAAAAAAAEKADAT
AEADAATAAVPINSESLIRCRLAIALLFFQRIAANNRSIVRLPQPVLSAE
AMAAAAADAGSAAADVKLFGWSSASAAGPSPAAAAARGRWGKASPNPGLG
GGSAAAVPCEKLAHVEAFRGGRLLWGAESASAIADAPLAVMSIAMHLYNR
HVEAAASLTALQVG
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mRNA from alignment at P-wetherbeei_contig10194:391..2227+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10194.1.2 ID=mRNA_P-wetherbeei_contig10194.1.2|Name=mRNA_P-wetherbeei_contig10194.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1837bp|location=Sequence derived from alignment at P-wetherbeei_contig10194:391..2227+ (Phaeothamnion wetherbeei SAG_119_79)
AGGTGCGTCAAATTAAAGCGTCCCTGCGGAGGCGAGCGCCCACAGTGCCG
CCGCTGCGCGCTTGCCTTGAGCGCGACGCCTGTCAAATGCCGCTATTCGG
GTACCAAGCGGCGGCCGACGGAACGCTTTCCCGGTGCCGGGGAAGGAGCC
GCCAGCGCGGCGGCGGCGGCCGCCAATGCTGCCCTGGCGGCCAGCCGCGT
CTCGCTGTCCGCCTCGGGAGCGGTCGGGCTAACCGGCGTCCAGCAGCGCT
TCCTCCAGTCTTTTCTAGCCAGCTTCGGCGAGACGATACCGTTCGGCTGC
GCCACGAGCGCACTTATCGCGTCGCTCTTTGATTCCTCTGCGGCGGCGGC
CTCGGTGCGCCGCCTCGGGGCCGGCAGCGCTGGACTCAGCAGCAGCAGCA
AAAGCCCCCGGGCGGACGGCGGTAGGAGTGGCCGTGGCGGCGGTGGTGAC
GTCGGTGGCGACGGTTGCGATTCCGGTGGTTCCCGGGCCTGCAGCAACAG
CGGCGGCAGCAAAGGCGATGGGGCTGGTGCCGCTGCCGCATCCACCCGAG
AGGCCCTTCAGCGGGGCATCCTTTTCGGCGTTCTCGCCGTCGGTGCGTTG
CTGTCGGGCGACTGCTTGGACGCCAGCGAGCATTTGGACCTGATGCTGCG
GTCGAACTGTCATATGCAGCGTGCCCTGCAGTTGCTGGACAGCTGCGAAA
GCGACAGCGGCGGCGGCGGGAGCGCTGGCAGAAGCGCTGGCGGGAGCGAT
GGCGGCGTCGGCGCCAGCAGCAACAGAGTCATGGGTATCCCTGAGGTGCG
GGTTACCTCACAGGTGGCGGCTGCCGCTGAAGAAGTTCCAGTAGACGCGC
TCCTTTGCGTGTTGCAGCTTTTGGAGGGAATTTACTTCCTCCTGTCAGGA
AAGGCGGACCTGTTTGTGGTGAGTCTCTTTTTTTCGAAGCTTAATTGCCG
CCATCCTCTGCACCGCTTCCGAGCTCCCATCTTACATCGAGAGGAGAGGC
GGGACAAGCGCGAAAGGGGTGCCATTCGTCGTCTGATCTCCGAAGAAAGA
CAGGATATGAGCGGCCAGGCATTCTTTTTTGGGGTTGCTCGACAAGAGAG
GAACGGCCCGGCCCCACTAGCTGGTCCCGCTCGTTCCGCGCAATGCCTGA
AACCCCCCGAGCCTAACCCTCTCTAACTCGTCCGGCGCTTTTCATTTTCT
GGACAATTCAGGAGTGCCTGCAGCATGCAGTGAATTCGTTTCGGCTGGCA
TGGGCTTCCTTTGCACCTGAAGCGGCCACGACAACACCGCCGCCGCCGGC
AGCGGCCGCAGCGGCGGCGGCGGCGGAAAAGGCGGATGCAACGGCAGAGG
CGGATGCCGCTACGGCGGCGGTACCAATCAATTCTGAGTCCCTGATTCGC
TGCCGCCTGGCGATCGCTCTTCTTTTTTTCCAGCGTATCGCTGCAAACAA
CAGATCCATAGTGAGGCTTCCACAGCCGGTTCTGAGCGCGGAAGCGATGG
CCGCCGCTGCCGCCGACGCCGGCAGCGCCGCCGCCGACGTCAAACTGTTC
GGCTGGAGCTCAGCGTCGGCGGCGGGGCCATCGCCGGCTGCGGCGGCGGC
GAGGGGCCGGTGGGGCAAAGCCTCGCCCAACCCAGGTTTAGGAGGCGGCA
GTGCAGCAGCGGTGCCGTGCGAAAAGCTTGCGCACGTGGAGGCATTCCGC
GGTGGGCGACTGCTTTGGGGCGCCGAGAGTGCCTCTGCGATCGCCGACGC
ACCTCTCGCCGTCATGAGCATCGCGATGCATCTGTACAACCGCCACGTCG
AGGCCGCAGCTTCCCTCACAGCGTTGCAAGTCGGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10194:391..2227+

>mRNA_P-wetherbeei_contig10194.1.2 ID=mRNA_P-wetherbeei_contig10194.1.2|Name=mRNA_P-wetherbeei_contig10194.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1542bp|location=Sequence derived from alignment at P-wetherbeei_contig10194:391..2227+ (Phaeothamnion wetherbeei SAG_119_79)
AGGTGCGTCAAATTAAAGCGTCCCTGCGGAGGCGAGCGCCCACAGTGCCG
CCGCTGCGCGCTTGCCTTGAGCGCGACGCCTGTCAAATGCCGCTATTCGG
GTACCAAGCGGCGGCCGACGGAACGCTTTCCCGGTGCCGGGGAAGGAGCC
GCCAGCGCGGCGGCGGCGGCCGCCAATGCTGCCCTGGCGGCCAGCCGCGT
CTCGCTGTCCGCCTCGGGAGCGGTCGGGCTAACCGGCGTCCAGCAGCGCT
TCCTCCAGTCTTTTCTAGCCAGCTTCGGCGAGACGATACCGTTCGGCTGC
GCCACGAGCGCACTTATCGCGTCGCTCTTTGATTCCTCTGCGGCGGCGGC
CTCGGTGCGCCGCCTCGGGGCCGGCAGCGCTGGACTCAGCAGCAGCAGCA
AAAGCCCCCGGGCGGACGGCGGTAGGAGTGGCCGTGGCGGCGGTGGTGAC
GTCGGTGGCGACGGTTGCGATTCCGGTGGTTCCCGGGCCTGCAGCAACAG
CGGCGGCAGCAAAGGCGATGGGGCTGGTGCCGCTGCCGCATCCACCCGAG
AGGCCCTTCAGCGGGGCATCCTTTTCGGCGTTCTCGCCGTCGGTGCGTTG
CTGTCGGGCGACTGCTTGGACGCCAGCGAGCATTTGGACCTGATGCTGCG
GTCGAACTGTCATATGCAGCGTGCCCTGCAGTTGCTGGACAGCTGCGAAA
GCGACAGCGGCGGCGGCGGGAGCGCTGGCAGAAGCGCTGGCGGGAGCGAT
GGCGGCGTCGGCGCCAGCAGCAACAGAGTCATGGGTATCCCTGAGGTGCG
GGTTACCTCACAGGTGGCGGCTGCCGCTGAAGAAGTTCCAGTAGACGCGC
TCCTTTGCGTGTTGCAGCTTTTGGAGGGAATTTACTTCCTCCTGTCAGGA
AAGGCGGACCTGTTTGTGGAGTGCCTGCAGCATGCAGTGAATTCGTTTCG
GCTGGCATGGGCTTCCTTTGCACCTGAAGCGGCCACGACAACACCGCCGC
CGCCGGCAGCGGCCGCAGCGGCGGCGGCGGCGGAAAAGGCGGATGCAACG
GCAGAGGCGGATGCCGCTACGGCGGCGGTACCAATCAATTCTGAGTCCCT
GATTCGCTGCCGCCTGGCGATCGCTCTTCTTTTTTTCCAGCGTATCGCTG
CAAACAACAGATCCATAGTGAGGCTTCCACAGCCGGTTCTGAGCGCGGAA
GCGATGGCCGCCGCTGCCGCCGACGCCGGCAGCGCCGCCGCCGACGTCAA
ACTGTTCGGCTGGAGCTCAGCGTCGGCGGCGGGGCCATCGCCGGCTGCGG
CGGCGGCGAGGGGCCGGTGGGGCAAAGCCTCGCCCAACCCAGGTTTAGGA
GGCGGCAGTGCAGCAGCGGTGCCGTGCGAAAAGCTTGCGCACGTGGAGGC
ATTCCGCGGTGGGCGACTGCTTTGGGGCGCCGAGAGTGCCTCTGCGATCG
CCGACGCACCTCTCGCCGTCATGAGCATCGCGATGCATCTGTACAACCGC
CACGTCGAGGCCGCAGCTTCCCTCACAGCGTTGCAAGTCGGG
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