mRNA_P-wetherbeei_contig1018.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1018.1.1
Unique NamemRNA_P-wetherbeei_contig1018.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1018.1.1 vs. uniprot
Match: A0A7S2V2Y4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Y4_9STRA)

HSP 1 Score: 118 bits (296), Expect = 5.860e-26
Identity = 86/266 (32.33%), Postives = 132/266 (49.62%), Query Frame = 2 
Query:  257 MDDLELIAAVERRLADVEREKGELELEVIDLITKTDHAAATLPKRKTNMDEAQIRATVADLEFKRTTSSMPLAKEKALLREQEQLKARVKEVKEYQIKEDQLRDLRDRRRVAEXXXXXXXXXXXXXXXXXXXXXLATALGVPSKTLVTTVVAIPDDRVGLVMGKRRAALQAVEAEYGVACEEHIVRDADGTPRGGGASSNDASRIEVTGTREGCMAAKARLERVTLAVELTVKVSAEVAAALRANKWALMHRLEAEHDCRIDLLAP 1054
            + D++L+  +++R+ +   EK  ++L++     K  +A A LP+R  NMD++ I   +  L+FKR TS++ L +EKA+LRE E  K R K   EY+ +E  L  LR  R   +                     LA  +GV    L  + VA+PD     VMGK R  +   E EY V+ E    R                  I + G  +GC AAKAR+ER+TL+V   ++ +     ALR N++ +M+RL+  HD R+D+  P
Sbjct:   59 LSDVDLMQLLQQRMNEANAEKENMQLKLKSYDDKIRNAVARLPRRP-NMDDSAIEEEIKKLDFKRETSTLSLTQEKAILREMEAFKNRTKANNEYRQQEAALAKLRQDRGKLQEALAAKTVACGELKSGLAKLALAHRVGVTVAELTESSVAVPDQFAPRVMGKGRVNITTWENEYSVSMEYDRPRQT----------------INIRGGAQGCAAAKARIERITLSVMEELQATPPTMVALRLNRFEVMNRLQEAHDVRLDVAGP 307
[Close]
BLAST of mRNA_P-wetherbeei_contig1018.1.1 vs. uniprot
Match: A0A835Z3V4_9STRA (KH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3V4_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.520e-15
Identity = 73/258 (28.29%), Postives = 121/258 (46.90%), Query Frame = 2 
Query:  281 AVERRLADVEREKGELELEVIDLITKTDHAAATLPKRKTNMDEAQIRATVADLEFKRTTSSMPLAKEKALLREQEQLKARVKEVKEYQIKEDQLRDLRDRRRVAEXXXXXXXXXXXXXXXXXXXXXLATALGVPSKTLVTTVVAIPDDRVGLVMGKRRAALQAVEAEYGVACEEHIVRDADG------------------TPRGGGASSNDASRIEVTGTREGCMAAKARLERVTLAVELTVKVSAEVAAALRANKWA 1000
            AV  +LA+ + E+  LE+++++   + D A   LP+R     E ++   +A LEF R+T+SM L+KEK +LR+Q+Q +A++K++KE   +E  +  L+D+                          LA   GV    LVT  V +P D++G ++G+ RAAL  +E + GV C E     +                       GG         I+V+  +    AA AR+      V+  + +SA+V AAL+ +  A
Sbjct:   92 AVASKLAEAQGERSALEVKILETRHRVDAARKRLPRRPREA-EKELEDEIAKLEFYRSTNSMSLSKEKEVLRQQDQARAKIKDIKERARQEKDIEALQDKVGALIEESKANTEKVNELSRGLAKVHLAVKAGVGVADLVTATVHVPSDKIGRIIGRSRAALADLEKDCGVVCRERSSSSSGXXXXXXXXXXXXXXXXXXXATNGG----XXXIAIDVSXXQAXXDAACARVRAAIATVDSKIAISADVVAALKVSSSA 344
[Close]
BLAST of mRNA_P-wetherbeei_contig1018.1.1 vs. uniprot
Match: A0A5D6XW14_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW14_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.890e-5
Identity = 61/258 (23.64%), Postives = 114/258 (44.19%), Query Frame = 2 
Query:  272 LIAAVERRLADVEREKGELELEVIDLITKTDHAAATLPKRKTNMDEAQIRATVADLEFKRTTSSMPLAKEKALLREQEQLKARVKEVKEYQIKEDQLRDLRDRRRVAEXXXXXXXXXXXXXXXXXXXXXLATALGVPSKTLVTTVVAIPDDRVGLVMGKRRAALQAVEAEYGVACEEHIVRDADGTPRGGGASSNDASRIEVTGTREGCMAAKARLERVTLAVELTVKVSAEVAAALRANKWALMHRLEAEHDCRIDL 1045
            L+A +++RL  V   K E    +   + +    A   P R+ NM    ++  +A  E +++T+S+  A+EK +LR+ +QL  +++E  E+   +  +   +  R                         +A A+G      VT  +A+P DR+G+V+GK+ A L+ +E + GV      + D D          N ++ + +T        AK  +E ++LA   ++ +  +    L   K   +H LEA    +ID+
Sbjct:    7 LVAQMQQRLESVTAAK-EANATIGKKLDEKLRVAFKNPPRRPNMAVDAVKQEIAAKELQQSTTSLSNAQEKLVLRDLQQLNDKLREWHEFDKFQAWVDATKAERNERFQQNREFEQQLQQLGLALKKLKVAAAIGAEVADFVTLELAVPADRMGVVIGKQYANLRQLEKDCGV------LLDVD----------NKSNVVRITSAPSHAARAKEAVENISLATNHSIGLHPDTVKMLLIQKSRNLHELEARLGLKIDV 247
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1018.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S2V2Y4_9STRA5.860e-2632.33Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835Z3V4_9STRA3.520e-1528.29KH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A5D6XW14_9STRA1.890e-523.64Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1018contigP-wetherbeei_contig1018:1054..3273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FTS6
PFAMsKH_1
Model size1683
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.44e-33
EggNOG OGs28HET@1|root,2QPSV@2759|Eukaryota
Ec32 ortholog descriptionK Homology domain, type 1
Ec32 orthologEc-14_001000.1
DescriptionK homology RNA-binding domain
Cds size1425
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185857.7040806-UTR-P-wetherbeei_contig1018:1053..13091683185857.7040806-UTR-P-wetherbeei_contig1018:1053..1309Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1018 1054..1309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185857.714618-CDS-P-wetherbeei_contig1018:1309..14681683185857.714618-CDS-P-wetherbeei_contig1018:1309..1468Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1018 1310..1468 +
1683185857.7280447-CDS-P-wetherbeei_contig1018:1694..18531683185857.7280447-CDS-P-wetherbeei_contig1018:1694..1853Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1018 1695..1853 +
1683185857.7418485-CDS-P-wetherbeei_contig1018:1957..22711683185857.7418485-CDS-P-wetherbeei_contig1018:1957..2271Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1018 1958..2271 +
1683185857.7526963-CDS-P-wetherbeei_contig1018:2480..32731683185857.7526963-CDS-P-wetherbeei_contig1018:2480..3273Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1018 2481..3273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1018.1.1prot_P-wetherbeei_contig1018.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1018 1310..3273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1018.1.1

>prot_P-wetherbeei_contig1018.1.1 ID=prot_P-wetherbeei_contig1018.1.1|Name=mRNA_P-wetherbeei_contig1018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=475bp
MDDLELIAAVERRLADVEREKGELELEVIDLITKTDHAAATLPKRKTNMD
EAQIRATVADLEFKRTTSSMPLAKEKALLREQEQLKARVKEVKEYQIKED
QLRDLRDRRRVAEDAARSKRDSIRELRLALKKLQLATALGVPSKTLVTTV
VAIPDDRVGLVMGKRRAALQAVEAEYGVACEEHIVRDADGTPRGGGASSN
DASRIEVTGTREGCMAAKARLERVTLAVELTVKVSAEVAAALRANKWALM
HRLEAEHDCRIDLLAPGEVSRGAGGAAATTVTATAAASSNSVAARGRGAA
AGSATRVDGGRGERSSKGAAGGSGRGDKGGDTAASVSAASSKPTGPGRVV
IRGMPDTAEAASAAIRGLRGARVSIPLNERAVPAILGSKGSNINRIEAEY
GVAVDVERGAGTVVVAGEAGAVEAASVELRRLAEDNAPAEELLPLESGFQ
ASLLLRNGGEALKVIQKDLGLLLNV
back to top

mRNA from alignment at P-wetherbeei_contig1018:1054..3273+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1018.1.1 ID=mRNA_P-wetherbeei_contig1018.1.1|Name=mRNA_P-wetherbeei_contig1018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2220bp|location=Sequence derived from alignment at P-wetherbeei_contig1018:1054..3273+ (Phaeothamnion wetherbeei SAG_119_79)
TCCCATCGTCGCTGCTGCCGCCACCGCGCCGACTCAGTTCACGTAGCTGA
CCCTGCTGCCGCCGCGGCCGCCACCGCGCCGACTCAGTTCACGTAGCTGA
CCCTGCTGCCGCCGCGGCCGCTGTTCAGTGCGTTGTCTCCAGGGATGCCA
CCTGCCACCGCCAGCCCCACACCAGAACACCACACCTCGAGCAGCCGGCA
GGGCGAAGGAAACAGAGCATTCAAAGCAAAAAGATAGATCAACCCGTTGC
ATCAGGATGGATGACCTGGAGCTGATCGCTGCAGTGGAGCGAAGATTGGC
AGACGTGGAGCGAGAAAAAGGCGAGCTGGAGTTGGAGGTCATCGATCTCA
TCACAAAGACCGACCATGCCGCTGCCACGCTGCCAAAACGGAAGACCAAT
ATGGACGAAGCCCAGGTGCGGGCTTGCTTCTGCAGGCACCAGTAGATGGT
TTATTTATTTGCGTGCTGCTGGCGAAGCTCGTTTTCCATGAGAAAGACGT
TATGCGTGAACGTCTTCATTTCAGGACACTACCATTAGTTGTGAAAGCAG
CACTGACAGCCATAAGGTGCAAGAGTAACGCTAAAAGCGCTTCGCTACTT
TGTACATTGCAATGCATTTACCCTTCACTTCCGTTGCGCAGATTCGTGCC
ACAGTGGCAGATCTAGAGTTTAAGAGGACGACGTCGAGCATGCCGTTGGC
GAAAGAGAAGGCGCTACTGCGCGAGCAGGAGCAGCTAAAGGCCCGCGTCA
AGGAGGTGAAAGAGTACCAGATTAAGGAAGACCAGCTCCGCGACCTCCGG
GTAAGGATCTGCTGCATGCTGCTCCCTCTCCTTTGTTTGCAGCGGTGCCC
TGATGCATCCTCCTTCGGCGCCGGGCCTCGCTCGCATCGTTTTTCCTGAG
GCAGGATCGCCGCCGAGTTGCCGAAGACGCGGCACGCTCGAAGCGCGACA
GCATCCGCGAGCTCCGCCTCGCCCTAAAGAAGCTGCAGCTGGCGACGGCG
CTCGGCGTGCCCTCCAAGACCCTAGTCACCACCGTGGTCGCCATCCCGGA
TGACCGCGTTGGGCTGGTGATGGGCAAGCGCCGTGCGGCGCTACAGGCGG
TCGAGGCCGAGTACGGCGTGGCCTGCGAGGAGCACATCGTCCGCGACGCC
GATGGCACGCCCCGCGGCGGCGGTGCCAGCAGTAATGACGCCTCCCGCAT
CGAGGTCACGGGAACACGGTGAGCGAGAGTTAAATCGTAAGAGAACTTTC
CTCAGATACATTGTAAACAGTGCATCATAGGAGAAAAGGTGCATTGCGGA
CAGGCAGGCAGACGAAGCGACGTCGTTCCTTTCCGCGGGCTGCTGTAGTC
TGAGCAAGTATTTTTTGGGCATGATTTTGGTTGAATGGTTGAACCCCATC
CGATATCCCTCCCAAACGAAACCCCAGGGAGGGCTGCATGGCGGCCAAGG
CCCGGCTGGAGCGGGTGACGCTGGCGGTGGAGCTCACCGTGAAGGTTTCG
GCCGAGGTCGCCGCCGCGCTCCGCGCCAACAAGTGGGCCCTGATGCACCG
CCTCGAGGCCGAGCATGACTGCCGAATCGACCTCTTGGCGCCTGGCGAGG
TGTCCCGCGGCGCCGGCGGTGCGGCGGCGACGACGGTGACGGCAACCGCA
GCGGCCAGCTCCAACAGCGTCGCCGCCCGCGGCCGCGGCGCGGCGGCGGG
CTCGGCGACCCGTGTGGATGGTGGAAGGGGCGAACGCAGCAGCAAAGGGG
CGGCGGGGGGAAGCGGTCGGGGCGACAAGGGCGGCGACACTGCGGCCTCG
GTGTCAGCGGCATCCTCGAAGCCCACGGGCCCGGGCCGCGTGGTGATCCG
CGGCATGCCGGACACGGCCGAGGCGGCGTCGGCGGCGATCCGCGGCCTCC
GTGGCGCCCGCGTCTCCATTCCGCTGAACGAGCGCGCCGTGCCCGCCATC
TTAGGCTCCAAGGGCAGCAACATCAACCGCATCGAGGCCGAGTACGGCGT
CGCCGTCGACGTCGAGCGGGGGGCCGGCACCGTGGTGGTCGCTGGTGAGG
CCGGCGCCGTGGAGGCGGCCTCTGTCGAGCTGCGGCGCCTTGCGGAGGAT
AACGCGCCGGCAGAGGAACTGTTGCCGCTCGAGAGCGGCTTTCAGGCATC
GCTGCTCCTCCGCAACGGCGGGGAGGCCCTCAAGGTCATCCAGAAGGACC
TGGGGCTGCTGCTCAACGTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1018:1054..3273+

>mRNA_P-wetherbeei_contig1018.1.1 ID=mRNA_P-wetherbeei_contig1018.1.1|Name=mRNA_P-wetherbeei_contig1018.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1425bp|location=Sequence derived from alignment at P-wetherbeei_contig1018:1054..3273+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATGACCTGGAGCTGATCGCTGCAGTGGAGCGAAGATTGGCAGACGT
GGAGCGAGAAAAAGGCGAGCTGGAGTTGGAGGTCATCGATCTCATCACAA
AGACCGACCATGCCGCTGCCACGCTGCCAAAACGGAAGACCAATATGGAC
GAAGCCCAGATTCGTGCCACAGTGGCAGATCTAGAGTTTAAGAGGACGAC
GTCGAGCATGCCGTTGGCGAAAGAGAAGGCGCTACTGCGCGAGCAGGAGC
AGCTAAAGGCCCGCGTCAAGGAGGTGAAAGAGTACCAGATTAAGGAAGAC
CAGCTCCGCGACCTCCGGGATCGCCGCCGAGTTGCCGAAGACGCGGCACG
CTCGAAGCGCGACAGCATCCGCGAGCTCCGCCTCGCCCTAAAGAAGCTGC
AGCTGGCGACGGCGCTCGGCGTGCCCTCCAAGACCCTAGTCACCACCGTG
GTCGCCATCCCGGATGACCGCGTTGGGCTGGTGATGGGCAAGCGCCGTGC
GGCGCTACAGGCGGTCGAGGCCGAGTACGGCGTGGCCTGCGAGGAGCACA
TCGTCCGCGACGCCGATGGCACGCCCCGCGGCGGCGGTGCCAGCAGTAAT
GACGCCTCCCGCATCGAGGTCACGGGAACACGGGAGGGCTGCATGGCGGC
CAAGGCCCGGCTGGAGCGGGTGACGCTGGCGGTGGAGCTCACCGTGAAGG
TTTCGGCCGAGGTCGCCGCCGCGCTCCGCGCCAACAAGTGGGCCCTGATG
CACCGCCTCGAGGCCGAGCATGACTGCCGAATCGACCTCTTGGCGCCTGG
CGAGGTGTCCCGCGGCGCCGGCGGTGCGGCGGCGACGACGGTGACGGCAA
CCGCAGCGGCCAGCTCCAACAGCGTCGCCGCCCGCGGCCGCGGCGCGGCG
GCGGGCTCGGCGACCCGTGTGGATGGTGGAAGGGGCGAACGCAGCAGCAA
AGGGGCGGCGGGGGGAAGCGGTCGGGGCGACAAGGGCGGCGACACTGCGG
CCTCGGTGTCAGCGGCATCCTCGAAGCCCACGGGCCCGGGCCGCGTGGTG
ATCCGCGGCATGCCGGACACGGCCGAGGCGGCGTCGGCGGCGATCCGCGG
CCTCCGTGGCGCCCGCGTCTCCATTCCGCTGAACGAGCGCGCCGTGCCCG
CCATCTTAGGCTCCAAGGGCAGCAACATCAACCGCATCGAGGCCGAGTAC
GGCGTCGCCGTCGACGTCGAGCGGGGGGCCGGCACCGTGGTGGTCGCTGG
TGAGGCCGGCGCCGTGGAGGCGGCCTCTGTCGAGCTGCGGCGCCTTGCGG
AGGATAACGCGCCGGCAGAGGAACTGTTGCCGCTCGAGAGCGGCTTTCAG
GCATCGCTGCTCCTCCGCAACGGCGGGGAGGCCCTCAAGGTCATCCAGAA
GGACCTGGGGCTGCTGCTCAACGTC
back to top