mRNA_P-wetherbeei_contig10176.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10176.2.1
Unique NamemRNA_P-wetherbeei_contig10176.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10176.2.1 vs. uniprot
Match: A0A835Z3B2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3B2_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.670e-27
Identity = 50/78 (64.10%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 RACTIYEERPDFCRVTQVTFNRMYGVGVEEMDRFCTECCREQITDVYGKASPEMIKFNTALKGVKSGRAPVPTDPFKG 234
            RACTIYE RP FC V+  TF  MYGV  EEMD FCT CCREQITDVYGK S EM +FN A+  +K G    P DPF G
Sbjct:   78 RACTIYETRPSFCTVSPETFADMYGVDGEEMDSFCTHCCREQITDVYGKRSDEMHRFNAAISELKRGDELQPVDPFSG 155          
BLAST of mRNA_P-wetherbeei_contig10176.2.1 vs. uniprot
Match: A0A4D9CSB2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSB2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.280e-23
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 RACTIYEERPDFCRVTQVTFNRMYGVGVEEMDRFCTECCREQITDVYGKASPEMIKFNTALKGVKSGRAPVPTDPFKG 234
            RACT++E+RP FCRV   TF +MYGV   EMD+FCT CCREQI DVYG  S EM  FN A+K +K+      ++  KG
Sbjct:   16 RACTVFEDRPWFCRVEGKTFEKMYGVTGSEMDKFCTSCCREQIADVYGTTSGEMRSFNMAIKHLKASAGDARSERSKG 93          
BLAST of mRNA_P-wetherbeei_contig10176.2.1 vs. uniprot
Match: W7TMW6_9STRA (Uncharacterized protein family UPF0153 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMW6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.770e-22
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 RACTIYEERPDFCRVTQVTFNRMYGVGVEEMDRFCTECCREQITDVYGKASPEMIKFNTALKGVKSGRAPVPTDPFKG 234
            RACT++E+RP FCRV   TF +MYGV   EMD+FCT CCREQI DVYG  S EM+ FN A+K +K+      ++  KG
Sbjct:  196 RACTVFEDRPWFCRVEGKTFEKMYGVTGSEMDKFCTSCCREQIADVYGTTSGEMLSFNMAIKHLKASAGDARSERSKG 273          
BLAST of mRNA_P-wetherbeei_contig10176.2.1 vs. uniprot
Match: D8LKL6_ECTSI (Fe-S-cluster oxidoreductase-like n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKL6_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.260e-20
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 RACTIYEERPDFCRVTQVTFNRMYGVGVEEMDRFCTECCREQITDVYGKASPEMIKFNTALKGVKSGRAPVP 216
            RACT+Y +RP FCRV   TF  MYGV  E+MD FC+ CC EQI+DVYG  S E+  FN AL  ++ G  P P
Sbjct:  185 RACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAESKELRVFNEALAALERGERPKP 256          
BLAST of mRNA_P-wetherbeei_contig10176.2.1 vs. uniprot
Match: A0A7S3K3R1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3R1_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.530e-20
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 RACTIYEERPDFCRVTQVTFNRMYGVGVEEMDRFCTECCREQITDVYGKASPEMIKFNTALKGVK 195
            R CTIY++RPDFC+V   +F  MYG+  +++D FCT CCRE I+DVYG  S EM +FN ALK ++
Sbjct:  125 RLCTIYDDRPDFCKVEANSFQSMYGIHSDDLDNFCTSCCREHISDVYGLNSQEMRRFNGALKSLR 189          
BLAST of mRNA_P-wetherbeei_contig10176.2.1 vs. uniprot
Match: A0A8J7EIP6_9CYAN (YkgJ family cysteine cluster protein n=1 Tax=Nodosilinea sp. LEGE 06152 TaxID=2777966 RepID=A0A8J7EIP6_9CYAN)

HSP 1 Score: 84.7 bits (208), Expect = 1.660e-19
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 RACTIYEERPDFCRVTQVTFNRMYGVGVEEMDRFCTECCREQITDVYGKASPEMIKFNTAL 183
            R CTIY +RPDFCRVT  TF  M+GV  +E+D F  +CC+E I D+YG  SPEM +FN A+
Sbjct:   54 RLCTIYPDRPDFCRVTFSTFETMFGVASDELDDFAIDCCQEHIADIYGDESPEMERFNQAV 114          
BLAST of mRNA_P-wetherbeei_contig10176.2.1 vs. uniprot
Match: A0A2T2W634_9CYAN (Fe-S cluster protein n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A2T2W634_9CYAN)

HSP 1 Score: 84.3 bits (207), Expect = 2.350e-19
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 RACTIYEERPDFCRVTQVTFNRMYGVGVEEMDRFCTECCREQITDVYGKASPEMIKFNTALKG 189
            R CTIY +RPDFCRVT  TF  M+GV  +E+D F  +CC+E I D+YG  SPEM +F  A+ G
Sbjct:   54 RTCTIYPDRPDFCRVTFSTFETMFGVASDELDDFAIDCCQEHIADIYGDESPEMERFERAVGG 116          
BLAST of mRNA_P-wetherbeei_contig10176.2.1 vs. uniprot
Match: A0A5Q4EA80_9CYAN (YkgJ family cysteine cluster protein n=1 Tax=Leptolyngbya sp. DLM2.Bin27 TaxID=2480213 RepID=A0A5Q4EA80_9CYAN)

HSP 1 Score: 84.3 bits (207), Expect = 2.350e-19
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 RACTIYEERPDFCRVTQVTFNRMYGVGVEEMDRFCTECCREQITDVYGKASPEMIKFNTAL 183
            R CTIY +RP FCRVT  TF  M+G+  +++D F  +CC+E I D+YG+ASPEM +FN A+
Sbjct:   54 RRCTIYPDRPSFCRVTLDTFEAMFGIEADQLDDFAIDCCQEHIADIYGEASPEMSRFNAAV 114          
BLAST of mRNA_P-wetherbeei_contig10176.2.1 vs. uniprot
Match: UPI0019F4FAC6 (YkgJ family cysteine cluster protein n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI0019F4FAC6)

HSP 1 Score: 81.6 bits (200), Expect = 2.570e-18
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 RACTIYEERPDFCRVTQVTFNRMYGVGVEEMDRFCTECCREQITDVYGKASPEMIKFNTAL 183
            R CTIYE+RP FCRVT  TF+ M+G+   +++ F  +CCREQI DVYG  S EM+KF+ A+
Sbjct:   54 RECTIYEKRPSFCRVTAETFHSMFGITAADLNDFAIDCCREQIEDVYGDRSLEMLKFDRAV 114          
BLAST of mRNA_P-wetherbeei_contig10176.2.1 vs. uniprot
Match: A0A6H2NI06_9CYAN (YkgJ family cysteine cluster protein n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A6H2NI06_9CYAN)

HSP 1 Score: 80.5 bits (197), Expect = 7.730e-18
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 RACTIYEERPDFCRVTQVTFNRMYGVGVEEMDRFCTECCREQITDVYGKASPEMIKFNTAL 183
            R CTIY++RPDFCRVT  TF  M+ +   +++ F  +CC+E I D+YG+ SPEM +FN A+
Sbjct:   54 RRCTIYDQRPDFCRVTATTFEAMFDIDPADLNEFAIDCCQEHIDDIYGEDSPEMQRFNQAV 114          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10176.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3B2_9STRA2.670e-2764.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CSB2_9STRA2.280e-2355.13Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TMW6_9STRA1.770e-2255.13Uncharacterized protein family UPF0153 n=1 Tax=Nan... [more]
D8LKL6_ECTSI2.260e-2055.56Fe-S-cluster oxidoreductase-like n=2 Tax=Ectocarpu... [more]
A0A7S3K3R1_9STRA5.530e-2055.38Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J7EIP6_9CYAN1.660e-1957.38YkgJ family cysteine cluster protein n=1 Tax=Nodos... [more]
A0A2T2W634_9CYAN2.350e-1955.56Fe-S cluster protein n=2 Tax=unclassified Cyanobac... [more]
A0A5Q4EA80_9CYAN2.350e-1954.10YkgJ family cysteine cluster protein n=1 Tax=Lepto... [more]
UPI0019F4FAC62.570e-1855.74YkgJ family cysteine cluster protein n=1 Tax=filam... [more]
A0A6H2NI06_9CYAN7.730e-1850.82YkgJ family cysteine cluster protein n=2 Tax=Pseud... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10176contigP-wetherbeei_contig10176:1755..2379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LKL6
PFAMsCxxCxxCC
Model size234
Max annot lvl2759|Eukaryota
KEGG koko:K06940
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.7e-21
EggNOG OGsCOG0727@1|root,2RZ66@2759|Eukaryota
DescriptionPutative zinc- or iron-chelating domain
Cds size234
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185857.5355241-CDS-P-wetherbeei_contig10176:1754..18361683185857.5355241-CDS-P-wetherbeei_contig10176:1754..1836Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10176 1755..1836 -
1683185857.5462096-CDS-P-wetherbeei_contig10176:2227..23791683185857.5462096-CDS-P-wetherbeei_contig10176:2227..2379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10176 2228..2379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10176.2.1prot_P-wetherbeei_contig10176.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10176 1755..2379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10176.2.1

>prot_P-wetherbeei_contig10176.2.1 ID=prot_P-wetherbeei_contig10176.2.1|Name=mRNA_P-wetherbeei_contig10176.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
RACTIYEERPDFCRVTQVTFNRMYGVGVEEMDRFCTECCREQITDVYGKA
SPEMIKFNTALKGVKSGRAPVPTDPFKG
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mRNA from alignment at P-wetherbeei_contig10176:1755..2379-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10176.2.1 ID=mRNA_P-wetherbeei_contig10176.2.1|Name=mRNA_P-wetherbeei_contig10176.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=625bp|location=Sequence derived from alignment at P-wetherbeei_contig10176:1755..2379- (Phaeothamnion wetherbeei SAG_119_79)
AGGGCCTGCACCATTTACGAGGAGCGGCCGGACTTCTGTCGGGTGACGCA GGTGACGTTCAACCGCATGTACGGCGTCGGCGTGGAGGAGATGGACCGCT TCTGCACCGAGTGCTGCCGGGAGCAGATTACCGACGTCTACGGCAAGGCA AGGTGAGAGCAGTGAGGGAGGAGGGCGTCGAGAAATGGGGGGATGATGAT AGATGTGAGTTGAGTTGGGAGGAACTGAGTACGTGGGTTTAACGCTGGGC TTTTCTCTTCTTTCTCTCAGATGCGCCACAGTGTGTGTGAAGATGGACCG CCCATAGGCGAGAAGATTTTTTTAGAGGCGGTGAGACTTCTTTTGGGGGT GCAAGTTCCGTGATTCGATAAGATCAGGTTGGTGGGAAGCTTAGTTCCTG AAACAACAGCAACAAGTTGACCTCTTTTTCGCCGTCGGGTCAGTCAAGCG TTGTGGTAAGGATCGGGCGGCAATTATTTGCCATACAGACAGCGTCCCTC TTTGCCCTCTCCTTTCTGTGGCTCATGAACGCTGCCGCTGCAGTCCGGAG ATGATCAAATTCAACACGGCGTTGAAGGGCGTCAAGTCGGGCCGCGCGCC CGTTCCGACCGATCCTTTCAAGGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10176:1755..2379-

>mRNA_P-wetherbeei_contig10176.2.1 ID=mRNA_P-wetherbeei_contig10176.2.1|Name=mRNA_P-wetherbeei_contig10176.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig10176:1755..2379- (Phaeothamnion wetherbeei SAG_119_79)
AGGGCCTGCACCATTTACGAGGAGCGGCCGGACTTCTGTCGGGTGACGCA
GGTGACGTTCAACCGCATGTACGGCGTCGGCGTGGAGGAGATGGACCGCT
TCTGCACCGAGTGCTGCCGGGAGCAGATTACCGACGTCTACGGCAAGGCA
AGTCCGGAGATGATCAAATTCAACACGGCGTTGAAGGGCGTCAAGTCGGG
CCGCGCGCCCGTTCCGACCGATCCTTTCAAGGGA
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