mRNA_P-wetherbeei_contig1017.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1017.1.1
Unique NamemRNA_P-wetherbeei_contig1017.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1017.1.1 vs. uniprot
Match: UPI001401BFF3 (cytochrome b5-like n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001401BFF3)

HSP 1 Score: 63.2 bits (152), Expect = 2.280e-8
Identity = 36/102 (35.29%), Postives = 52/102 (50.98%), Query Frame = 1 
Query: 1303 RLLVVIHGSLYDLTYFAARHPGGEGILSEYDRRDCTTEFERYLHSETARAMMRAYIAWDAEAVVGGRGGLSWRRRRSSSVESTS*SGPGCGAAAAFR*L*WV 1608
            RL +VIHG +YD++ FAA HPGGE +L E   +D T  FE   HS  AR MM+ Y   + +       G +  R ++  +       PGC +  + R   W+
Sbjct:   22 RLCLVIHGKVYDVSDFAAEHPGGESVLLEKSGKDATEAFEDAGHSGDAREMMQQYYIGELDTE-----GSTLERPQAKKI-------PGCSSPTSARCCCWL 111
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1017.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001401BFF32.280e-835.29cytochrome b5-like n=1 Tax=Petromyzon marinus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1017contigP-wetherbeei_contig1017:3291..5028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog9315.ENSMEUP00000001386
Preferred nameCYB5B
PFAMsCyt-b5
Model size1738
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0002682,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006091,GO:0008047,GO:0008150,GO:0008152,GO:0009055,GO:0009987,GO:0016020,GO:0016491,GO:0019867,GO:0020037,GO:0022900,GO:0030234,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0035206,GO:0042127,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044237,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045153,GO:0045595,GO:0045610,GO:0046906,GO:0048037,GO:0048471,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051239,GO:0055114,GO:0065007,GO:0065009,GO:0097159,GO:0098588,GO:0098772,GO:0098805,GO:1901363
Exons1
Evalue4.98e-08
EggNOG OGsCOG5274@1|root,KOG0537@2759|Eukaryota,3A87A@33154|Opisthokonta,3BSXI@33208|Metazoa,3D9PJ@33213|Bilateria,48EBC@7711|Chordata,49AYJ@7742|Vertebrata,3JGJJ@40674|Mammalia,4K5F8@9263|Metatheria
DescriptionCytochrome b5
Cds size1200
COG categoryC
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185857.120756-UTR-P-wetherbeei_contig1017:3290..34711683185857.120756-UTR-P-wetherbeei_contig1017:3290..3471Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1017 3291..3471 -
1683185857.136135-UTR-P-wetherbeei_contig1017:4671..50281683185857.136135-UTR-P-wetherbeei_contig1017:4671..5028Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1017 4672..5028 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185857.1288645-CDS-P-wetherbeei_contig1017:3471..46711683185857.1288645-CDS-P-wetherbeei_contig1017:3471..4671Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1017 3472..4671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1017.1.1prot_P-wetherbeei_contig1017.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1017 3472..4671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1017.1.1

>prot_P-wetherbeei_contig1017.1.1 ID=prot_P-wetherbeei_contig1017.1.1|Name=mRNA_P-wetherbeei_contig1017.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=400bp
MPWASSSPAAELHAASGEVPNPLLWLPWIAAVLICSWRVNRWFGHPTFHA
PRAAALPSKAYGGCTEMPPRQQQQLPTQEQKPQWRRWCGVRQAAPLSGSK
AKAVAETATANAALAEPLERTAVMTNAADAAAAAATAAAESSLGELPEPL
LAAVTSYLKARDLVQLAPVSRSMQVSATSEEPWKALFHWAFGEPRCLTGP
CAAAPADNGDDFVGVGVPSFGMGDARRSCCRWNGSWMLAFFEELRRRPME
LMRRGGKIDLRGLALLPPAIGPHDGDGPETAAAAAAAAAASAAAAATAAE
NEGATMAAAADGDDWRLLVVIHGSLYDLTYFAARHPGGEGILSEYDRRDC
TTEFERYLHSETARAMMRAYIAWDAEAVVGGRGGLSWRRRRSSSVESTS*
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mRNA from alignment at P-wetherbeei_contig1017:3291..5028-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1017.1.1 ID=mRNA_P-wetherbeei_contig1017.1.1|Name=mRNA_P-wetherbeei_contig1017.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1738bp|location=Sequence derived from alignment at P-wetherbeei_contig1017:3291..5028- (Phaeothamnion wetherbeei SAG_119_79)
TTTTTTCGGTTAAGTAAGGAGATGCGACCTTCTCCAAGGCATTTGACGGT
GCCCGTATCGCCTGGCAGCGCCCCAACTTTGGATCAGGTCGCTTTCCAGA
CCTGTCAGCAATTCTTTCAGCGATGCATGAAATATCATCAGTCGAGCATT
AGAATCATGGCTGTGTTGCTCTTAGATGCGGTAACATCCTAGTGCAACGC
GCCTTAAGGCAACGTGCCTCCTTACTTCCACCGTCTTACCTAATTCTGCA
GGAGCCTTAAAGGCCCTCATGGCGACGTAAGTGCTTCCTAAACATAGTCC
GGCAGCTACTTTTATCGCATACGAGGCCACGTTCAGCCGCGCGGCACGCT
TTCAGCGATGCCGTGGGCGTCTTCCTCGCCAGCAGCGGAGCTTCATGCTG
CTTCCGGCGAAGTGCCAAACCCGTTGCTCTGGCTGCCATGGATAGCGGCG
GTGCTAATCTGCTCATGGCGCGTCAACCGCTGGTTCGGCCACCCCACGTT
TCACGCGCCACGCGCTGCCGCCTTGCCTTCGAAAGCGTATGGTGGCTGTA
CCGAGATGCCACCACGGCAACAGCAGCAGCTGCCAACGCAGGAGCAGAAG
CCGCAGTGGCGTCGTTGGTGCGGCGTTAGACAGGCAGCCCCATTATCAGG
GTCAAAGGCGAAGGCGGTGGCGGAGACTGCTACGGCAAACGCGGCTCTGG
CGGAACCGTTGGAAAGGACGGCAGTGATGACCAATGCGGCAGATGCAGCG
GCAGCAGCGGCTACGGCAGCAGCGGAATCGTCCCTGGGCGAGCTGCCGGA
GCCACTGCTCGCCGCCGTGACGTCGTACCTTAAGGCGCGGGACTTGGTAC
AGTTAGCGCCGGTGTCACGTTCGATGCAGGTGTCGGCGACATCTGAAGAG
CCTTGGAAAGCGCTTTTCCATTGGGCGTTCGGGGAACCGCGCTGTTTGAC
TGGACCGTGTGCAGCTGCGCCTGCGGACAATGGTGACGATTTTGTTGGCG
TTGGCGTTCCTTCTTTTGGGATGGGTGATGCACGGAGAAGCTGCTGCCGC
TGGAACGGCAGCTGGATGCTCGCGTTCTTCGAAGAATTGCGGCGCAGGCC
GATGGAGTTAATGCGGCGCGGAGGCAAGATTGATTTGCGAGGCCTAGCGC
TGCTCCCGCCTGCCATCGGTCCACACGATGGAGACGGGCCGGAGACAGCC
GCCGCCGCAGCCGCCGCCGCAGCCGCCTCTGCAGCCGCCGCCGCAACGGC
AGCGGAGAATGAAGGGGCGACGATGGCAGCGGCAGCGGATGGAGATGACT
GGCGGCTGCTCGTTGTCATCCACGGCAGCCTCTACGACCTAACGTACTTC
GCGGCGCGACATCCCGGCGGGGAGGGCATCTTGAGCGAGTACGATCGGCG
CGACTGCACTACTGAGTTCGAGCGGTATCTGCACAGCGAGACAGCGCGGG
CGATGATGCGCGCTTACATCGCCTGGGATGCCGAGGCCGTGGTGGGCGGC
CGAGGCGGGCTGTCGTGGCGGCGTCGCCGATCGTCGTCCGTTGAGTCAAC
TTCTTAGTCTGGCCCGGGTTGTGGCGCTGCGGCGGCCTTTCGTTGACTTT
AGTGGGTGGTGCGACGAAATGGTTTCGCGTGCCCTTCATAGGTTTCGGTG
TAAAAAGTGTGGTGAGTTTTAGTCTGGGCATTTCCTTTCTTTCCATTGAC
TTTCTTGGCGAAATCCCATAACCTACGATTGTTTCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1017:3291..5028-

>mRNA_P-wetherbeei_contig1017.1.1 ID=mRNA_P-wetherbeei_contig1017.1.1|Name=mRNA_P-wetherbeei_contig1017.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1200bp|location=Sequence derived from alignment at P-wetherbeei_contig1017:3291..5028- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTGGGCGTCTTCCTCGCCAGCAGCGGAGCTTCATGCTGCTTCCGG
CGAAGTGCCAAACCCGTTGCTCTGGCTGCCATGGATAGCGGCGGTGCTAA
TCTGCTCATGGCGCGTCAACCGCTGGTTCGGCCACCCCACGTTTCACGCG
CCACGCGCTGCCGCCTTGCCTTCGAAAGCGTATGGTGGCTGTACCGAGAT
GCCACCACGGCAACAGCAGCAGCTGCCAACGCAGGAGCAGAAGCCGCAGT
GGCGTCGTTGGTGCGGCGTTAGACAGGCAGCCCCATTATCAGGGTCAAAG
GCGAAGGCGGTGGCGGAGACTGCTACGGCAAACGCGGCTCTGGCGGAACC
GTTGGAAAGGACGGCAGTGATGACCAATGCGGCAGATGCAGCGGCAGCAG
CGGCTACGGCAGCAGCGGAATCGTCCCTGGGCGAGCTGCCGGAGCCACTG
CTCGCCGCCGTGACGTCGTACCTTAAGGCGCGGGACTTGGTACAGTTAGC
GCCGGTGTCACGTTCGATGCAGGTGTCGGCGACATCTGAAGAGCCTTGGA
AAGCGCTTTTCCATTGGGCGTTCGGGGAACCGCGCTGTTTGACTGGACCG
TGTGCAGCTGCGCCTGCGGACAATGGTGACGATTTTGTTGGCGTTGGCGT
TCCTTCTTTTGGGATGGGTGATGCACGGAGAAGCTGCTGCCGCTGGAACG
GCAGCTGGATGCTCGCGTTCTTCGAAGAATTGCGGCGCAGGCCGATGGAG
TTAATGCGGCGCGGAGGCAAGATTGATTTGCGAGGCCTAGCGCTGCTCCC
GCCTGCCATCGGTCCACACGATGGAGACGGGCCGGAGACAGCCGCCGCCG
CAGCCGCCGCCGCAGCCGCCTCTGCAGCCGCCGCCGCAACGGCAGCGGAG
AATGAAGGGGCGACGATGGCAGCGGCAGCGGATGGAGATGACTGGCGGCT
GCTCGTTGTCATCCACGGCAGCCTCTACGACCTAACGTACTTCGCGGCGC
GACATCCCGGCGGGGAGGGCATCTTGAGCGAGTACGATCGGCGCGACTGC
ACTACTGAGTTCGAGCGGTATCTGCACAGCGAGACAGCGCGGGCGATGAT
GCGCGCTTACATCGCCTGGGATGCCGAGGCCGTGGTGGGCGGCCGAGGCG
GGCTGTCGTGGCGGCGTCGCCGATCGTCGTCCGTTGAGTCAACTTCTTAG
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