mRNA_P-wetherbeei_contig10165.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10165.1.1
Unique NamemRNA_P-wetherbeei_contig10165.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10165.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10165contigP-wetherbeei_contig10165:9..1573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1565
Hectar predicted targeting categoryother localisation
Exons1
Cds size831
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185857.040964-UTR-P-wetherbeei_contig10165:8..5871683185857.040964-UTR-P-wetherbeei_contig10165:8..587Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10165 9..587 -
1683185857.0595648-UTR-P-wetherbeei_contig10165:1418..15731683185857.0595648-UTR-P-wetherbeei_contig10165:1418..1573Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10165 1419..1573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185857.0495865-CDS-P-wetherbeei_contig10165:587..14181683185857.0495865-CDS-P-wetherbeei_contig10165:587..1418Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10165 588..1418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10165.1.1prot_P-wetherbeei_contig10165.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10165 588..1418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10165.1.1

>prot_P-wetherbeei_contig10165.1.1 ID=prot_P-wetherbeei_contig10165.1.1|Name=mRNA_P-wetherbeei_contig10165.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=277bp
MERQPAPTSAASPVFRMAPSGGDHEDDGDDDDDDDDNCENCGGSGGAGGG
GVRDTAGRAEATAAGDGKDFGASVRRPATAPAASGGSSSGGPHRGSAPSP
FAPMEVEELAAAFRNKRSVMVRPRSVSPAMQDGITGGAGNDSDGETGGRR
KLHCASVSPTARQRAQQQQQQQHRRQSPPGGIDGPADSSSLEDPEAFFDA
DMCDLDGLDSDEASAGGYGGYADAAGAAGGGGGSGGMGGHDSPTADSGPG
NMYGLLMQQRTGKAADVPAGIGAPGA*
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mRNA from alignment at P-wetherbeei_contig10165:9..1573-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10165.1.1 ID=mRNA_P-wetherbeei_contig10165.1.1|Name=mRNA_P-wetherbeei_contig10165.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1565bp|location=Sequence derived from alignment at P-wetherbeei_contig10165:9..1573- (Phaeothamnion wetherbeei SAG_119_79)
GCGCAACGAGCGTCGACGTCGGCGTCAGCGCTAGGGCCGGTGGTGCCGCC
GGCGAGGATGATCGCGGCGATGGCGGCTCAGCTCGGGCGCCAATCGTGAT
CAGCGTCTCGGCGAAGGGCTGCTCTGGCAGCGGCATCGGCGGGCCGTTCG
ACAAGATGGAGCGACAACCCGCGCCAACCAGCGCGGCTTCCCCGGTCTTC
CGGATGGCGCCCAGCGGTGGCGACCACGAGGACGATGGTGACGACGACGA
CGACGACGACGACAACTGCGAAAACTGCGGGGGCAGCGGCGGTGCCGGTG
GCGGCGGCGTCCGAGACACGGCGGGCAGGGCCGAAGCCACTGCCGCTGGC
GACGGCAAGGACTTTGGCGCCAGCGTCCGGCGTCCCGCTACTGCCCCCGC
GGCATCCGGCGGCAGCAGCAGCGGCGGCCCGCACCGCGGCAGCGCGCCGT
CGCCCTTCGCCCCGATGGAGGTCGAGGAGCTGGCGGCAGCCTTCCGAAAC
AAGCGCAGCGTTATGGTGCGCCCGAGGTCCGTGAGCCCAGCCATGCAGGA
TGGCATCACGGGCGGCGCCGGCAACGACAGCGACGGCGAGACGGGCGGGC
GGCGGAAGCTGCACTGCGCGTCTGTTTCGCCCACAGCGCGGCAGCGGGCG
CAGCAGCAGCAGCAGCAGCAGCATCGCCGGCAGTCGCCGCCGGGTGGCAT
CGACGGCCCGGCAGACTCCTCCTCGCTCGAAGACCCGGAGGCATTCTTCG
ACGCCGACATGTGCGACCTCGACGGACTCGACAGCGACGAGGCATCCGCT
GGCGGCTACGGCGGTTACGCCGACGCCGCCGGGGCAGCCGGGGGCGGCGG
CGGCAGCGGCGGCATGGGAGGCCACGACTCGCCCACCGCCGATAGCGGGC
CGGGAAATATGTACGGGCTGCTCATGCAACAACGCACCGGGAAGGCCGCT
GACGTCCCTGCGGGGATCGGCGCGCCGGGAGCATAAGGCCAGTGCACGCG
TGGCTGCCGTCGTCGCTGCCGCCGCCACTGCCGCCGCCGCCTGTTGCGGC
AGCGGCTGCGGCCGCCATCCCCGCCGCCGCCACCATCGCCGGGGCCTCCT
GCGCCGGCTGATTTGCGGTTGGGGGGGGCACGACGCTGCGGATTCGCCGT
TGGCCATTTCAGCCGCACCACCGACGTCGGCGTTTTGTCGTCGATTCTGA
GTGTGTGTGTATCAAATATTTACTCCTCGGCATGGCGGCTGCGACGTATG
CCGAGGAGCCGACCGAGAGGGAGTTGAGGTTGCGGACGAGCGAGCGGCGT
TCCGTTCTTTCCGCCTCCCTTTTGAGAGGCGGGAGGGGCGCAACTTCGGC
CGGGCAAGAAGAAGTGAGCCCGTTTGGGGGGTTTGGCTGGGCGGGGATAA
AGTGCCGGCCGGATGGTTTCTCGACGTGTGTGTATCTTGTTTCGGCGCCG
GCTGCCAGACGGCATGCACCACGCCAGGGCACAACACCGGCGGCGGAGGA
GCAGAGGCGAGGGGCGGGCGATGTATTGCGGGGGGCCGGTAATCGGAAAG
AAGGGACAAGAGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10165:9..1573-

>mRNA_P-wetherbeei_contig10165.1.1 ID=mRNA_P-wetherbeei_contig10165.1.1|Name=mRNA_P-wetherbeei_contig10165.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=831bp|location=Sequence derived from alignment at P-wetherbeei_contig10165:9..1573- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCGACAACCCGCGCCAACCAGCGCGGCTTCCCCGGTCTTCCGGAT
GGCGCCCAGCGGTGGCGACCACGAGGACGATGGTGACGACGACGACGACG
ACGACGACAACTGCGAAAACTGCGGGGGCAGCGGCGGTGCCGGTGGCGGC
GGCGTCCGAGACACGGCGGGCAGGGCCGAAGCCACTGCCGCTGGCGACGG
CAAGGACTTTGGCGCCAGCGTCCGGCGTCCCGCTACTGCCCCCGCGGCAT
CCGGCGGCAGCAGCAGCGGCGGCCCGCACCGCGGCAGCGCGCCGTCGCCC
TTCGCCCCGATGGAGGTCGAGGAGCTGGCGGCAGCCTTCCGAAACAAGCG
CAGCGTTATGGTGCGCCCGAGGTCCGTGAGCCCAGCCATGCAGGATGGCA
TCACGGGCGGCGCCGGCAACGACAGCGACGGCGAGACGGGCGGGCGGCGG
AAGCTGCACTGCGCGTCTGTTTCGCCCACAGCGCGGCAGCGGGCGCAGCA
GCAGCAGCAGCAGCAGCATCGCCGGCAGTCGCCGCCGGGTGGCATCGACG
GCCCGGCAGACTCCTCCTCGCTCGAAGACCCGGAGGCATTCTTCGACGCC
GACATGTGCGACCTCGACGGACTCGACAGCGACGAGGCATCCGCTGGCGG
CTACGGCGGTTACGCCGACGCCGCCGGGGCAGCCGGGGGCGGCGGCGGCA
GCGGCGGCATGGGAGGCCACGACTCGCCCACCGCCGATAGCGGGCCGGGA
AATATGTACGGGCTGCTCATGCAACAACGCACCGGGAAGGCCGCTGACGT
CCCTGCGGGGATCGGCGCGCCGGGAGCATAA
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