mRNA_P-wetherbeei_contig1016.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: A0A835YNB7_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB7_9STRA) HSP 1 Score: 133 bits (335), Expect = 4.380e-34 Identity = 58/119 (48.74%), Postives = 76/119 (63.87%), Query Frame = 2 Query: 86 VGHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCRRASWSPHNNTMPFHHKCKGARRLRACA 442 +G V+ DPN++WHD F HTLGGLDCYP Y QGA LS LV YL+ R +L+ FTNEDVT+G+WL GVDRE++ + + LW C C + + +T F H CK +L+ CA Sbjct: 98 IGRVIKDPNHKWHDAKFVSHTLGGLDCYPAYHQGAFYLLSEPLVQYLHQGRSKLLTFTNEDVTMGSWLMGVDREMIAFNSISEARLWECTCAKYTKWLKYDTNAFFHNCKSLDQLQKCA 216
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: D7FQB9_ECTSI (Hexosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB9_ECTSI) HSP 1 Score: 130 bits (328), Expect = 4.960e-31 Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 2 Query: 80 ERVGHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCRRASWSPHNNTMPFHHKCKGARRLRAC 439 + VG V+ D + +W+D + HT+ GLDCYPVYMQGA LS+ LV++L +L+ F NEDVT+G WLHGVDR + L L D +W C C+R +++P + F H CKG LR C Sbjct: 328 DEVGKVIVDMDEKWYDGKYLNHTMNGLDCYPVYMQGAFYILSYPLVEFLNQGSSKLLTFDNEDVTIGLWLHGVDRAIFPLNDLRDARMWECSCKRPNFNPGGDANVFFHGCKGMDDLRGC 447
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: A0A6H5JHW0_9PHAE (Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW0_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.430e-30 Identity = 55/120 (45.83%), Postives = 76/120 (63.33%), Query Frame = 2 Query: 80 ERVGHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCRRASWSPHNNTMPFHHKCKGARRLRAC 439 + VG V+ D +++W+D + HT+ GLDCYPVYMQGA LS+ LV++L +L+ F NEDVT+G WLHGVDR + L L D +W C C+R +++P + F H CK LR C Sbjct: 288 DAVGKVIVDMDDKWYDGKYLNHTMNGLDCYPVYMQGAFYILSYPLVEFLNQGSSKLLTFDNEDVTIGLWLHGVDRAIFPLNDLRDARVWECSCKRPNFNPGGDANVFFHNCKSMDDLRGC 407
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: A0A6H5KLW3_9PHAE (Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLW3_9PHAE) HSP 1 Score: 121 bits (304), Expect = 9.950e-29 Identity = 56/118 (47.46%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 89 GHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCRRASWSPHNNTMP-FHHKCKGARRLRAC 439 G V+ +P++RW D + +HTLGGLDC+P YMQGA L+ LV++LY E L FTNEDVT+G+WL GVDRE+V++ +L LW C C R + F H CKG +L+ C Sbjct: 173 GRVMKNPDHRWFDSKYVQHTLGGLDCFPAYMQGAFYILAQPLVEHLYRGHEHLECFTNEDVTIGSWLMGVDREMVEMYNLHTSHLWDCLCARTQITVKTRRKQMFFHNCKGLSQLKLC 290
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: D8LT07_ECTSI (Beta-1,3-n-acetylglucosaminyltransferase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT07_ECTSI) HSP 1 Score: 121 bits (303), Expect = 5.530e-27 Identity = 56/118 (47.46%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 89 GHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCRRASWSPHNNTMP-FHHKCKGARRLRAC 439 G V+ +P++RW D + +HTLGGLDC+P YMQGA L+ LV++LY E L FTNEDVT+G+WL GVDRE+V++ +L LW C C R + F H CKG +L+ C Sbjct: 509 GRVMKNPDHRWFDSKYVQHTLGGLDCFPAYMQGAFYILAQPLVEHLYRGHEHLECFTNEDVTIGSWLMGVDREMVEMYNLRTSHLWDCLCARTQITVKTRKKHMFFHNCKGLSQLKLC 626
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: A0A835YWI3_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI3_9STRA) HSP 1 Score: 116 bits (291), Expect = 3.230e-26 Identity = 54/128 (42.19%), Postives = 75/128 (58.59%), Query Frame = 2 Query: 80 ERVGHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCRR------ASWSPHNNTMPFHHKCKGARRLRACAI 445 + VG V DP ++W+D + +HT+G ++CYP Y QGA LS LV++LY R+ L+ F NEDVT+G WL GVDR +V L L LW C C A++ ++ F H CK A ++ CAI Sbjct: 254 QMVGRVFSDPTHKWYDERYVEHTMGSMECYPPYHQGAGYILSRSLVEFLYKGRDHLLTFINEDVTMGTWLMGVDRSVVSLRDLDGARLWECTCASYRFAHDAAFHKNHQNNAFFHNCKQAWQMLKCAI 381
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: A0A835YTA1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTA1_9STRA) HSP 1 Score: 117 bits (294), Expect = 7.070e-26 Identity = 56/121 (46.28%), Postives = 72/121 (59.50%), Query Frame = 2 Query: 86 VGHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCR---RASWSPHNNTMPFHHKCKGARRLRAC 439 VG V+ D NRW+DP F HT+GGL CYPVYMQGA L+ LV++L R + F NEDVTVG+WL GVDR++V + + LW C C W+ ++ F H CK +LR C Sbjct: 447 VGRVIMDKTNRWYDPKFVTHTMGGLPCYPVYMQGAFYVLAQPLVEFLNLGRPHWVTFQNEDVTVGSWLLGVDRDIVTIDDITTARLWGCQCSLDTMPQWARKSSV--FFHDCKALEKLRRC 565
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: D7G6P0_ECTSI (Hexosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6P0_ECTSI) HSP 1 Score: 104 bits (259), Expect = 2.000e-21 Identity = 48/92 (52.17%), Postives = 58/92 (63.04%), Query Frame = 2 Query: 83 RVGHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPC 358 +VG V+ D ++W+D F HTL GLDCYPVYMQGA L+ LV++LY RE F NEDVTVG+WL GVDR L + LW C C Sbjct: 330 KVGRVIKDHKDKWYDQKFVHHTLAGLDCYPVYMQGAFYVLAQPLVEHLYRGREHYDTFINEDVTVGSWLLGVDRALGTIHDFESSRLWNCVC 421
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: A0A835Z4X8_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X8_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 5.630e-17 Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 2 Query: 158 LDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCRRAS-WSPHNNTMPFHHKCKGARRLRACA 442 LD YP Y QGA LS LV +L+ R +L+ F NEDVTVGAW+ ++RE+V LG L LW C C + W ++ + FHH CK +L+ACA Sbjct: 248 LDKYPAYHQGAFYLLSQPLVAHLHRGRAQLVAFANEDVTVGAWMMALNREMVALGSLSAAHLWDCTCATPTKWLRYDPNV-FHHNCKALAQLQACA 342
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: UPI00098E1774 (probable beta-1,3-galactosyltransferase 14 isoform X1 n=3 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E1774) HSP 1 Score: 54.7 bits (130), Expect = 8.800e-5 Identity = 39/124 (31.45%), Postives = 65/124 (52.42%), Query Frame = 2 Query: 89 GHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELI-VFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCRRAS---W--------SPHNNTMPFHHK--CKG 418 G VL DP +W++P + L G + Y Y G++ ALS+ +V+ L +R +++ +F+NEDVT+GAW+ ++ + H D +L CR +S W +P + H K C+G Sbjct: 243 GLVLTDPGQKWYEP---RSDLLGHE-YFSYAGGSIYALSYEVVENLVGLRRDVVRLFSNEDVTIGAWMLAMN-----VHHEDDRALCEPECRPSSVAVWDDGCSGLCNPEARMLELHEKEICRG 357 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1016.1.1 >prot_P-wetherbeei_contig1016.1.1 ID=prot_P-wetherbeei_contig1016.1.1|Name=mRNA_P-wetherbeei_contig1016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp MQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLback to top mRNA from alignment at P-wetherbeei_contig1016:1262..3023- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1016.1.1 ID=mRNA_P-wetherbeei_contig1016.1.1|Name=mRNA_P-wetherbeei_contig1016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1762bp|location=Sequence derived from alignment at P-wetherbeei_contig1016:1262..3023- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1016:1262..3023- >mRNA_P-wetherbeei_contig1016.1.1 ID=mRNA_P-wetherbeei_contig1016.1.1|Name=mRNA_P-wetherbeei_contig1016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig1016:1262..3023- (Phaeothamnion wetherbeei SAG_119_79)back to top |