mRNA_P-wetherbeei_contig1016.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1016.1.1
Unique NamemRNA_P-wetherbeei_contig1016.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: A0A835YNB7_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.380e-34
Identity = 58/119 (48.74%), Postives = 76/119 (63.87%), Query Frame = 2
Query:   86 VGHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCRRASWSPHNNTMPFHHKCKGARRLRACA 442
            +G V+ DPN++WHD  F  HTLGGLDCYP Y QGA   LS  LV YL+  R +L+ FTNEDVT+G+WL GVDRE++    + +  LW C C + +     +T  F H CK   +L+ CA
Sbjct:   98 IGRVIKDPNHKWHDAKFVSHTLGGLDCYPAYHQGAFYLLSEPLVQYLHQGRSKLLTFTNEDVTMGSWLMGVDREMIAFNSISEARLWECTCAKYTKWLKYDTNAFFHNCKSLDQLQKCA 216          
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: D7FQB9_ECTSI (Hexosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB9_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 4.960e-31
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 2
Query:   80 ERVGHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCRRASWSPHNNTMPFHHKCKGARRLRAC 439
            + VG V+ D + +W+D  +  HT+ GLDCYPVYMQGA   LS+ LV++L     +L+ F NEDVT+G WLHGVDR +  L  L D  +W C C+R +++P  +   F H CKG   LR C
Sbjct:  328 DEVGKVIVDMDEKWYDGKYLNHTMNGLDCYPVYMQGAFYILSYPLVEFLNQGSSKLLTFDNEDVTIGLWLHGVDRAIFPLNDLRDARMWECSCKRPNFNPGGDANVFFHGCKGMDDLRGC 447          
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: A0A6H5JHW0_9PHAE (Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW0_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.430e-30
Identity = 55/120 (45.83%), Postives = 76/120 (63.33%), Query Frame = 2
Query:   80 ERVGHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCRRASWSPHNNTMPFHHKCKGARRLRAC 439
            + VG V+ D +++W+D  +  HT+ GLDCYPVYMQGA   LS+ LV++L     +L+ F NEDVT+G WLHGVDR +  L  L D  +W C C+R +++P  +   F H CK    LR C
Sbjct:  288 DAVGKVIVDMDDKWYDGKYLNHTMNGLDCYPVYMQGAFYILSYPLVEFLNQGSSKLLTFDNEDVTIGLWLHGVDRAIFPLNDLRDARVWECSCKRPNFNPGGDANVFFHNCKSMDDLRGC 407          
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: A0A6H5KLW3_9PHAE (Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLW3_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 9.950e-29
Identity = 56/118 (47.46%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   89 GHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCRRASWSPHNNTMP-FHHKCKGARRLRAC 439
            G V+ +P++RW D  + +HTLGGLDC+P YMQGA   L+  LV++LY   E L  FTNEDVT+G+WL GVDRE+V++ +L    LW C C R   +        F H CKG  +L+ C
Sbjct:  173 GRVMKNPDHRWFDSKYVQHTLGGLDCFPAYMQGAFYILAQPLVEHLYRGHEHLECFTNEDVTIGSWLMGVDREMVEMYNLHTSHLWDCLCARTQITVKTRRKQMFFHNCKGLSQLKLC 290          
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: D8LT07_ECTSI (Beta-1,3-n-acetylglucosaminyltransferase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT07_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 5.530e-27
Identity = 56/118 (47.46%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   89 GHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCRRASWSPHNNTMP-FHHKCKGARRLRAC 439
            G V+ +P++RW D  + +HTLGGLDC+P YMQGA   L+  LV++LY   E L  FTNEDVT+G+WL GVDRE+V++ +L    LW C C R   +        F H CKG  +L+ C
Sbjct:  509 GRVMKNPDHRWFDSKYVQHTLGGLDCFPAYMQGAFYILAQPLVEHLYRGHEHLECFTNEDVTIGSWLMGVDREMVEMYNLRTSHLWDCLCARTQITVKTRKKHMFFHNCKGLSQLKLC 626          
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: A0A835YWI3_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI3_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.230e-26
Identity = 54/128 (42.19%), Postives = 75/128 (58.59%), Query Frame = 2
Query:   80 ERVGHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCRR------ASWSPHNNTMPFHHKCKGARRLRACAI 445
            + VG V  DP ++W+D  + +HT+G ++CYP Y QGA   LS  LV++LY  R+ L+ F NEDVT+G WL GVDR +V L  L    LW C C        A++  ++    F H CK A ++  CAI
Sbjct:  254 QMVGRVFSDPTHKWYDERYVEHTMGSMECYPPYHQGAGYILSRSLVEFLYKGRDHLLTFINEDVTMGTWLMGVDRSVVSLRDLDGARLWECTCASYRFAHDAAFHKNHQNNAFFHNCKQAWQMLKCAI 381          
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: A0A835YTA1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTA1_9STRA)

HSP 1 Score: 117 bits (294), Expect = 7.070e-26
Identity = 56/121 (46.28%), Postives = 72/121 (59.50%), Query Frame = 2
Query:   86 VGHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCR---RASWSPHNNTMPFHHKCKGARRLRAC 439
            VG V+ D  NRW+DP F  HT+GGL CYPVYMQGA   L+  LV++L   R   + F NEDVTVG+WL GVDR++V +  +    LW C C       W+  ++   F H CK   +LR C
Sbjct:  447 VGRVIMDKTNRWYDPKFVTHTMGGLPCYPVYMQGAFYVLAQPLVEFLNLGRPHWVTFQNEDVTVGSWLLGVDRDIVTIDDITTARLWGCQCSLDTMPQWARKSSV--FFHDCKALEKLRRC 565          
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: D7G6P0_ECTSI (Hexosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6P0_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.000e-21
Identity = 48/92 (52.17%), Postives = 58/92 (63.04%), Query Frame = 2
Query:   83 RVGHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPC 358
            +VG V+ D  ++W+D  F  HTL GLDCYPVYMQGA   L+  LV++LY  RE    F NEDVTVG+WL GVDR L  +       LW C C
Sbjct:  330 KVGRVIKDHKDKWYDQKFVHHTLAGLDCYPVYMQGAFYVLAQPLVEHLYRGREHYDTFINEDVTVGSWLLGVDRALGTIHDFESSRLWNCVC 421          
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: A0A835Z4X8_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X8_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 5.630e-17
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 2
Query:  158 LDCYPVYMQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCRRAS-WSPHNNTMPFHHKCKGARRLRACA 442
            LD YP Y QGA   LS  LV +L+  R +L+ F NEDVTVGAW+  ++RE+V LG L    LW C C   + W  ++  + FHH CK   +L+ACA
Sbjct:  248 LDKYPAYHQGAFYLLSQPLVAHLHRGRAQLVAFANEDVTVGAWMMALNREMVALGSLSAAHLWDCTCATPTKWLRYDPNV-FHHNCKALAQLQACA 342          
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Match: UPI00098E1774 (probable beta-1,3-galactosyltransferase 14 isoform X1 n=3 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E1774)

HSP 1 Score: 54.7 bits (130), Expect = 8.800e-5
Identity = 39/124 (31.45%), Postives = 65/124 (52.42%), Query Frame = 2
Query:   89 GHVLHDPNNRWHDPIFEKHTLGGLDCYPVYMQGALCALSFGLVDYLYSVREELI-VFTNEDVTVGAWLHGVDRELVQLGHLGDGSLWRCPCRRAS---W--------SPHNNTMPFHHK--CKG 418
            G VL DP  +W++P   +  L G + Y  Y  G++ ALS+ +V+ L  +R +++ +F+NEDVT+GAW+  ++     + H  D +L    CR +S   W        +P    +  H K  C+G
Sbjct:  243 GLVLTDPGQKWYEP---RSDLLGHE-YFSYAGGSIYALSYEVVENLVGLRRDVVRLFSNEDVTIGAWMLAMN-----VHHEDDRALCEPECRPSSVAVWDDGCSGLCNPEARMLELHEKEICRG 357          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1016.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A835YNB7_9STRA4.380e-3448.74Hexosyltransferase n=1 Tax=Tribonema minus TaxID=3... [more]
D7FQB9_ECTSI4.960e-3146.67Hexosyltransferase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JHW0_9PHAE1.430e-3045.83Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A6H5KLW3_9PHAE9.950e-2947.46Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D8LT07_ECTSI5.530e-2747.46Beta-1,3-n-acetylglucosaminyltransferase, putative... [more]
A0A835YWI3_9STRA3.230e-2642.19Hexosyltransferase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A835YTA1_9STRA7.070e-2646.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G6P0_ECTSI2.000e-2152.17Hexosyltransferase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A835Z4X8_9STRA5.630e-1746.88Hexosyltransferase n=1 Tax=Tribonema minus TaxID=3... [more]
UPI00098E17748.800e-531.45probable beta-1,3-galactosyltransferase 14 isoform... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1016contigP-wetherbeei_contig1016:1262..3023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQB9
PFAMsGalactosyl_T
Model size950
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.43e-20
EggNOG OGs2EVDE@1|root,2SXDD@2759|Eukaryota
DescriptionGalactosyltransferase
Cds size303
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.9807687-UTR-P-wetherbeei_contig1016:1261..17301683185856.9807687-UTR-P-wetherbeei_contig1016:1261..1730Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1016 1262..1730 -
1683185857.0082932-UTR-P-wetherbeei_contig1016:2483..25761683185857.0082932-UTR-P-wetherbeei_contig1016:2483..2576Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1016 2484..2576 -
1683185857.0153935-UTR-P-wetherbeei_contig1016:2938..30231683185857.0153935-UTR-P-wetherbeei_contig1016:2938..3023Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1016 2939..3023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.991003-CDS-P-wetherbeei_contig1016:1730..20271683185856.991003-CDS-P-wetherbeei_contig1016:1730..2027Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1016 1731..2027 -
1683185857.0002096-CDS-P-wetherbeei_contig1016:2477..24831683185857.0002096-CDS-P-wetherbeei_contig1016:2477..2483Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1016 2478..2483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1016.1.1prot_P-wetherbeei_contig1016.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1016 1731..2483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1016.1.1

>prot_P-wetherbeei_contig1016.1.1 ID=prot_P-wetherbeei_contig1016.1.1|Name=mRNA_P-wetherbeei_contig1016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
MQGALCALSFGLVDYLYSVREELIVFTNEDVTVGAWLHGVDRELVQLGHL
GDGSLWRCPCRRASWSPHNNTMPFHHKCKGARRLRACAIGRDGSQHRELC
*
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mRNA from alignment at P-wetherbeei_contig1016:1262..3023-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1016.1.1 ID=mRNA_P-wetherbeei_contig1016.1.1|Name=mRNA_P-wetherbeei_contig1016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1762bp|location=Sequence derived from alignment at P-wetherbeei_contig1016:1262..3023- (Phaeothamnion wetherbeei SAG_119_79)
CAGCCGGCGGAGGTGTCGAAAAAGCTGTACATGGGAGTGCCGACGGCCTG CGGGATCGATCCGGAGCTGCCGCAGGTGAGAGAGGGTGAGCGAGAGGAAC CGGTTGATTGATCGATCCATCGATTGATCCGTGGTTTTTATCCGATTTGG GGGCCTGTGGCTCTTCAGTCCAAGGAGAGCCAGATGGTTTCTTTCGTTTT TTTGCTGCTTCAAATTGTACGCGTTATCTCTTCTCTTCGTCTCTTCTTTG GGGGACACTTCTTTTGTTTGCTGGCGCATCCGGAATCGGTCCGCCACGCC TGTTTTCTCACCCGCGCGCGTGCCGCTTCACACCTCCTACCGCCTGCCGC CCTGTGTCTCGCTGCTGTCGGTTGCCGGGTGCGATTGATCAATCATTTGG CGTTTGATTGGTTGATTTTTTGGTCTTTTGTCATGCCACATCGCCAGGTG GGGCACGTGCTGCACGACCCCAACAATCGGTGGCACGACCCCATCTTCGA GAAGCACACGCTGGGCGGCCTCGACTGCTACCCCGTATATATGCAGGTCT GTCATTCTTCTCTGTCGATCTTTCCTTTTCTCTGTCAGTCTTCTTTCTTT TCGGTTCTCGGCGAGAAGAAGAGGGACGAGAAGGAAGTTATCCTTTTTTT TTGCAGCTTGGAACGGTTAAGTGCGACCACGCTGCTTGACGACAGTCCCG TTTGTGAATTTTGCTACTTCATGCAGTCTTCCCCTTCAACACTTGTTTGG CGTGATTCTTCTTCGTTTTTACATCCATTCCTTTTCTTCTTTCCTCTTCT CCTGGCCGTTGCGTCAGCAAACAGCCGAACTGATGGCTCCAAAGAAATGG ACACTGATGCCTCCCTTACCTTTTCACTACCATTCTCGCCCTTCTTCCAC GTCCTTTCCGTGTGCACCCGCACCTCCCCCCAAACCCTCCTCCCGAAACG AAACACCCGACCAAAAACATACACGCGCCTATCTCCACCTTGCCAGGGCG CGCTGTGCGCGCTGAGCTTCGGGCTGGTGGACTACCTCTACTCAGTGCGC GAAGAGCTCATCGTCTTCACCAACGAAGACGTCACCGTCGGAGCTTGGCT GCACGGCGTTGATCGCGAGCTCGTGCAGCTTGGCCACCTGGGCGACGGGT CGCTGTGGCGCTGCCCGTGCCGCCGGGCGTCGTGGTCCCCGCACAACAAC ACCATGCCCTTTCATCACAAGTGCAAGGGGGCGCGGCGCCTGCGGGCGTG CGCCATCGGCCGCGACGGTAGCCAGCACCGGGAGCTCTGCTGAGATTCGG GTTGTTCGGAAGATGGGGTTTGGGAGGTTTGGCAGCGGCTCTCGCGTACC GTGGCAGCTGGCGGCGGTTGGCAGGTCGCAGGAGAAGAAGCTCCGGCTGC TGGAGATCTGGCTGCTGACGGCTGCTGAAACACAAAACGCGGCATCCAGA GAAGCCCACAGCTCTCTATCTCCGGGCTGCTTACTTAGCTTGTAAGTGTG AATTTTTGTTGTTGAGATTGCGGTCGAAAAAACGGGCCGATCCCTGGAAA GCATCTCTGTGGTGTCGCCTGAATTGGCAGGTACATTTGCAGTATCAGCT ATGCTTTTACCCTTGAAACGGAGAGGTCTCCGTGCGGGACCGCTGGCGCG ACGTATCGCAGCATTTTTCAACGCCACGGCGAAGATCCCTGCCAAACCAC TACCGGTGAAGAGGGGATGGGTTTTGCCGAGACCCGACTCAAGCAATCGA AGTTTCGATGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1016:1262..3023-

>mRNA_P-wetherbeei_contig1016.1.1 ID=mRNA_P-wetherbeei_contig1016.1.1|Name=mRNA_P-wetherbeei_contig1016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig1016:1262..3023- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGGCGCGCTGTGCGCGCTGAGCTTCGGGCTGGTGGACTACCTCTA
CTCAGTGCGCGAAGAGCTCATCGTCTTCACCAACGAAGACGTCACCGTCG
GAGCTTGGCTGCACGGCGTTGATCGCGAGCTCGTGCAGCTTGGCCACCTG
GGCGACGGGTCGCTGTGGCGCTGCCCGTGCCGCCGGGCGTCGTGGTCCCC
GCACAACAACACCATGCCCTTTCATCACAAGTGCAAGGGGGCGCGGCGCC
TGCGGGCGTGCGCCATCGGCCGCGACGGTAGCCAGCACCGGGAGCTCTGC
TGA
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