mRNA_P-wetherbeei_contig10150.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10150.1.1
Unique NamemRNA_P-wetherbeei_contig10150.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10150.1.1 vs. uniprot
Match: A0A836CH25_9STRA (Transcription factor S-II-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH25_9STRA)

HSP 1 Score: 122 bits (305), Expect = 5.660e-30
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:   22 RLDWTEKNQEMINKQCGIKGTEGMFECGRCKSKKTTYFQKQTRSADEPMTTFVTCKNCGKNWKFC 216
            R+DW EKNQ+ INKQCGI   EGMFECGRCKSKKT Y+QKQTRSADEPMTTFVTC +CGK W+FC
Sbjct:  293 RMDWAEKNQDEINKQCGITNMEGMFECGRCKSKKTHYYQKQTRSADEPMTTFVTCLHCGKKWRFC 357
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BLAST of mRNA_P-wetherbeei_contig10150.1.1 vs. uniprot
Match: D7FZL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZL7_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.040e-28
Identity = 54/70 (77.14%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   10 RVRAR-LDWTEKNQEMINKQCGIKGTEGMFECGRCKSKKTTYFQKQTRSADEPMTTFVTCKNCGKNWKFC 216
            R  AR LDW +KN++ INKQCGIK T+GMFECGRCKS KTTY QKQTRSADEPMTTFVTC NC   WKFC
Sbjct:  302 RTEARMLDWYDKNEDKINKQCGIKETDGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWKFC 371
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BLAST of mRNA_P-wetherbeei_contig10150.1.1 vs. uniprot
Match: A0A8K1CMA4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMA4_PYTOL)

HSP 1 Score: 103 bits (258), Expect = 1.810e-23
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:   16 RARLDWTEKNQEMINKQCGIKGTEGMFECGRCKSKKTTYFQKQTRSADEPMTTFVTCKNCGKNWK 210
            RARLDW + N++ INKQCGI+ ++G+F CGRCKS KT+  QKQTRSADEPMT FV C NCG  WK
Sbjct:  246 RARLDWADANEDKINKQCGIENSKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 310
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BLAST of mRNA_P-wetherbeei_contig10150.1.1 vs. uniprot
Match: A0A6A5AKX6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AKX6_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.130e-23
Identity = 46/65 (70.77%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:   16 RARLDWTEKNQEMINKQCGIKGTEGMFECGRCKSKKTTYFQKQTRSADEPMTTFVTCKNCGKNWK 210
            RARLDW E N + INK CGIK T G+F CGRCKS KT+  Q+QTRSADEPMT FV C NCGK WK
Sbjct:  256 RARLDWAEANADKINKACGIKDTRGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHNCGKRWK 320
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BLAST of mRNA_P-wetherbeei_contig10150.1.1 vs. uniprot
Match: W4G1Y0_9STRA (Transcription elongation factor S-II n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G1Y0_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.060e-23
Identity = 46/65 (70.77%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:   16 RARLDWTEKNQEMINKQCGIKGTEGMFECGRCKSKKTTYFQKQTRSADEPMTTFVTCKNCGKNWK 210
            RARLDW E N + INK CGIK T G+F CGRCKS KT+  Q+QTRSADEPMT FV C NCGK WK
Sbjct:  280 RARLDWAEANADKINKACGIKDTRGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHNCGKRWK 344
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BLAST of mRNA_P-wetherbeei_contig10150.1.1 vs. uniprot
Match: A0A7S2XYD9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYD9_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.470e-23
Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:   19 ARLDWTEKNQEMINKQCGIKGTEGMFECGRCKSKKTTYFQKQTRSADEPMTTFVTCKNCGKNWKFC 216
            +R DW   N + +N  CGIK  EG+F+C RCKSKKTT+ QKQTRSADEPMT FVTC NCG  WKFC
Sbjct:  266 SRSDWDAANDQKLNAMCGIKQMEGLFQCFRCKSKKTTHTQKQTRSADEPMTVFVTCLNCGNRWKFC 331
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BLAST of mRNA_P-wetherbeei_contig10150.1.1 vs. uniprot
Match: K3WZ99_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZ99_GLOUD)

HSP 1 Score: 103 bits (256), Expect = 4.420e-23
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:   16 RARLDWTEKNQEMINKQCGIKGTEGMFECGRCKSKKTTYFQKQTRSADEPMTTFVTCKNCGKNWK 210
            RARLDW + N++ INKQCGI+  +G+F CGRCKS KT+  QKQTRSADEPMT FV C NCG  WK
Sbjct:  260 RARLDWADANEDKINKQCGIENAKGLFTCGRCKSTKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 324
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BLAST of mRNA_P-wetherbeei_contig10150.1.1 vs. uniprot
Match: A0A3R7J9J5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J9J5_9STRA)

HSP 1 Score: 102 bits (254), Expect = 4.650e-23
Identity = 44/64 (68.75%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:   19 ARLDWTEKNQEMINKQCGIKGTEGMFECGRCKSKKTTYFQKQTRSADEPMTTFVTCKNCGKNWK 210
            ARLDW E N + I KQCG +GT+G+F CGRCKS KT+  QKQTRSADEPMT FV C NCG  WK
Sbjct:  224 ARLDWAEANHDKIQKQCGTEGTKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVMCHNCGNRWK 287
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BLAST of mRNA_P-wetherbeei_contig10150.1.1 vs. uniprot
Match: A0A5D6XF33_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XF33_9STRA)

HSP 1 Score: 102 bits (254), Expect = 8.330e-23
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:   16 RARLDWTEKNQEMINKQCGIKGTEGMFECGRCKSKKTTYFQKQTRSADEPMTTFVTCKNCGKNWK 210
            +ARLDW + N++ INKQCGI+  +G+F CGRCKS KT+  QKQTRSADEPMT FV C NCG  WK
Sbjct:  258 KARLDWADANEDKINKQCGIENAKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 322
[Close]
BLAST of mRNA_P-wetherbeei_contig10150.1.1 vs. uniprot
Match: A0A485KR39_9STRA (Aste57867_10364 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KR39_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.110e-22
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:   16 RARLDWTEKNQEMINKQCGIKGTEGMFECGRCKSKKTTYFQKQTRSADEPMTTFVTCKNCGKNWK 210
            RARLDW E N + INK CGIK T G+F CGRCKS KT+  Q+QTRSADEPMT FV C +CGK WK
Sbjct:  255 RARLDWAEANADKINKACGIKDTRGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHDCGKRWK 319
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10150.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CH25_9STRA5.660e-3080.00Transcription factor S-II-domain-containing protei... [more]
D7FZL7_ECTSI1.040e-2877.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8K1CMA4_PYTOL1.810e-2367.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A5AKX6_9STRA2.130e-2370.77Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4G1Y0_9STRA3.060e-2370.77Transcription elongation factor S-II n=3 Tax=Aphan... [more]
A0A7S2XYD9_9STRA3.470e-2366.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3WZ99_GLOUD4.420e-2367.69Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3R7J9J5_9STRA4.650e-2368.75Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A5D6XF33_9STRA8.330e-2366.15Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A485KR39_9STRA1.110e-2269.23Aste57867_10364 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10150contigP-wetherbeei_contig10150:208..1229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZL7
PFAMsMed26,TFIIS_C,TFIIS_M
Model size563
Max annot lvl2759|Eukaryota
KEGG koko:K03145,ko:K03926
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000428,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006354,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016591,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050896,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
Exons2
Evalue2.11e-26
EggNOG OGsCOG1594@1|root,KOG1105@2759|Eukaryota
Ec32 ortholog descriptionTranscription elongation factor TFIIS/CRSP70
Ec32 orthologEc-25_003580.1
Descriptiontranscription, DNA-templated
Cds size168
COG categoryK
BRITEko00000,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.7743194-UTR-P-wetherbeei_contig10150:207..5511683185856.7743194-UTR-P-wetherbeei_contig10150:207..551Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10150 208..551 -
1683185856.8117998-UTR-P-wetherbeei_contig10150:1178..12291683185856.8117998-UTR-P-wetherbeei_contig10150:1178..1229Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10150 1179..1229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.7920933-CDS-P-wetherbeei_contig10150:551..6831683185856.7920933-CDS-P-wetherbeei_contig10150:551..683Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10150 552..683 -
1683185856.8026142-CDS-P-wetherbeei_contig10150:1142..11781683185856.8026142-CDS-P-wetherbeei_contig10150:1142..1178Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10150 1143..1178 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10150.1.1prot_P-wetherbeei_contig10150.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10150 552..1178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10150.1.1

>prot_P-wetherbeei_contig10150.1.1 ID=prot_P-wetherbeei_contig10150.1.1|Name=mRNA_P-wetherbeei_contig10150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=56bp
MINKQCGIKGTEGMFECGRCKSKKTTYFQKQTRSADEPMTTFVTCKNCGK
NWKFC*
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mRNA from alignment at P-wetherbeei_contig10150:208..1229-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10150.1.1 ID=mRNA_P-wetherbeei_contig10150.1.1|Name=mRNA_P-wetherbeei_contig10150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1022bp|location=Sequence derived from alignment at P-wetherbeei_contig10150:208..1229- (Phaeothamnion wetherbeei SAG_119_79)
GGGCTCTGGCGGGTACGCGCCAGGTTGGATTGGACGGAGAAAAATCAGGA
GATGATCAACAAGCAGTGCGGTATCAAGGGCACTGAGGTACGCTTCTTTT
TGGCTGACGATGTGATGGTTACTTGGGTCATGGCGTTCGGTCTCATCATA
TTGTGGTTCTTGCAGCGGATAATAGTTAAAAACTCATTCGAGCGCCATAA
AGCTTAATTCGAACTAAGGTATTTGGGGCTATATCAGGTCCAATGTAAAG
GTTGGGTTAACAGTCGCCGGCAGCCTGACCGGCGGGCGCCATGCCAACGA
GCAAGGCCTTCTGACGCGACTCGTAGCTCGTCCGTCTCAGTCGATATTTC
TTTAGTGTTTTTTTAAATGCTGCGTTGACTCCGAAGCAAAGGATGAATTA
TGTGAGGGGCTCAACATGACGGCGCGTACACATGTCCTCTCTCACCCTCA
CCTCCAGCTGCCTCTCCAATTGCCTGCTGCCACCCGCCGCCACTGTGCTG
CCTGCCGCTGTCCGCCGCCCCCATTCTGCCATCCCCCGCCGTGCAGGGCA
TGTTCGAGTGCGGGCGGTGCAAGTCGAAGAAGACGACGTACTTCCAGAAG
CAGACGCGCTCGGCGGACGAGCCCATGACCACCTTCGTCACGTGCAAGAA
CTGCGGCAAGAACTGGAAGTTCTGCTGATTTGATCTGCCGCCGCGGCGGC
GTTCGTTCGACGGAGGGATTGCTGCTGCTGCGTTGAAGGCGCGCCTGTGG
CTGACGTGATTGCCGCAGATTATCGCCGATGCGGCGGATCAAGCAGGATG
AGGACAGCGGCTGGTAAAAGAAACTGCACCGCCTCCGCAGCGTCCGCCTT
GCACTTTTTAGGGGGCAGATGAGAGCCATTATTTGGCAAGATGGGATTGA
AGAGGCTGCGGCCGCAGTATCGCCTTCCCACAGAAGGATCTGCGCGCTTT
GTGCCGCCAGGAAGGCGGTGGTGACAGCGGCGCCGCCACCGCCGGGTGCG
GTTCGCTTAGGACGGCGGGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10150:208..1229-

>mRNA_P-wetherbeei_contig10150.1.1 ID=mRNA_P-wetherbeei_contig10150.1.1|Name=mRNA_P-wetherbeei_contig10150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig10150:208..1229- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCAACAAGCAGTGCGGTATCAAGGGCACTGAGGGCATGTTCGAGTG
CGGGCGGTGCAAGTCGAAGAAGACGACGTACTTCCAGAAGCAGACGCGCT
CGGCGGACGAGCCCATGACCACCTTCGTCACGTGCAAGAACTGCGGCAAG
AACTGGAAGTTCTGCTGA
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