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Homology
BLAST of mRNA_P-wetherbeei_contig1015.2.1 vs. uniprot
Match: A0A836CQ15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ15_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 4.330e-5 Identity = 45/138 (32.61%), Postives = 62/138 (44.93%), Query Frame = 3
Query: 687 SVRGARNFE-ERMHHRARQAQHLLEIQVHARRLERCINSE--------------------------------------GLRFVRRLVATRQDRP-LSLEFVVRFNTAVFSVMSLQRGMLPLAHALLEVIERERFAYYY 980
SV GA + ER R +QAQH+LE+Q AR L+ CI SE +V + P SL+F +RFNT VFS+M LQ ++ L HA++ ++ERER +YY
Sbjct: 1129 SVFGAHHRVCERRERRLQQAQHVLEVQAEARLLKECIYSEIVXXXXXXXXXXXXXXXXXXXXXXIVVQXXXXXXXXXXXXXXASYMVNIQGGAPQTSLQFALRFNTTVFSLMQLQHALVELGHAVMALLERERQIFYY 1266
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1272 |
| Hectar predicted targeting category | mitochondrion |
| Exons | 4 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-11_000600.1 |
| Cds size | 831 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683185856.695924-UTR-P-wetherbeei_contig1015:5774..6060 | 1683185856.695924-UTR-P-wetherbeei_contig1015:5774..6060 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig1015 5775..6060 - |
| 1683185856.747942-UTR-P-wetherbeei_contig1015:7874..8029 | 1683185856.747942-UTR-P-wetherbeei_contig1015:7874..8029 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig1015 7875..8029 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683185856.704125-CDS-P-wetherbeei_contig1015:6060..6166 | 1683185856.704125-CDS-P-wetherbeei_contig1015:6060..6166 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1015 6061..6166 - |
| 1683185856.7156997-CDS-P-wetherbeei_contig1015:6517..6633 | 1683185856.7156997-CDS-P-wetherbeei_contig1015:6517..6633 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1015 6518..6633 - |
| 1683185856.727887-CDS-P-wetherbeei_contig1015:6965..7529 | 1683185856.727887-CDS-P-wetherbeei_contig1015:6965..7529 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1015 6966..7529 - |
| 1683185856.7374501-CDS-P-wetherbeei_contig1015:7829..7874 | 1683185856.7374501-CDS-P-wetherbeei_contig1015:7829..7874 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1015 7830..7874 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1015.2.1 >prot_P-wetherbeei_contig1015.2.1 ID=prot_P-wetherbeei_contig1015.2.1|Name=mRNA_P-wetherbeei_contig1015.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=277bp
MARAATAFRSICSIQMWREELSNISPVIVRTRALLRHIKLALEDAHGAFA
HYELTDGEAYIMAAGFDGSACGGIGGGGGGGANRNGSTGCGGVGAKSAAG
DGGNVNGGNGTGSDRNGGGDLSGPGANGGGGDVNTFSLRGVDSHAAVTAS
RVTAAAVAAGLPDDPAVWSTVASSGPASVRGARNFEERMHHRARQAQHLL
EIQVHARRLERCINSEGLRFVRRLVATRQDRPLSLEFVVRFNTAVFSVMS
LQRGMLPLAHALLEVIERERFAYYYA* back to topmRNA from alignment at P-wetherbeei_contig1015:5775..8029- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig1015.2.1 ID=mRNA_P-wetherbeei_contig1015.2.1|Name=mRNA_P-wetherbeei_contig1015.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2255bp|location=Sequence derived from alignment at P-wetherbeei_contig1015:5775..8029- (Phaeothamnion wetherbeei SAG_119_79)
CCGGCATCAAGTCGATCGGGGTATGCCTCGCTAAGCAGGCCACCTACCTC
GGCCTGTCGACACTCGAGCCGCAGCTCTGGCGGCGGCCCTTCCACGCGCC
ATCCTACCAGCGGCTGCTGGGGGCGCAGGAGGACATCCACGCGTCGCTCG
TGCTCATGGCGCGCGCCGCCACGGCCTTCCGGTCTATCTGCAGCATCCAG
GTGAGGTGCATTTGAAAAGGGTTCCAGCGTTTTACATCGTTGTGGTGTGT
TCCTTTCGGGATAAGGGTTCTTTTGCGTTCTGATGGGGCGACACGACGAC
GGGCTGGAGACAGTATATTTTTCGGCGCTCCTGGGACTGTTTAACTTGCT
GTTAGCAATAGCTTTAATTTCTTCCTCACAGCTCCACGCATTGCTGCCCT
CCGCTACTATAGCGCTCCGTTACTATGGTGCTGACCACATCCCAATCCTC
ATGCCCGGCGCCGCATCCCTCCGCCGTCCTCCGGCCCCCCTCCCCGGCAG
ATGTGGCGCGAAGAACTTTCTAACATCTCCCCGGTCATTGTCCGGACGCG
AGCGCTCCTCCGCCACATCAAGCTGGCGCTGGAGGACGCCCACGGCGCCT
TCGCCCACTATGAGCTCACCGACGGCGAAGCGTACATCATGGCTGCAGGC
TTCGACGGCTCTGCTTGTGGCGGGATCGGCGGTGGCGGTGGCGGCGGCGC
CAATCGGAACGGCAGCACCGGCTGCGGCGGCGTCGGCGCAAAGAGCGCTG
CTGGCGATGGCGGCAACGTGAACGGTGGCAATGGCACCGGCAGCGATCGA
AACGGCGGCGGCGACCTCAGCGGCCCTGGTGCGAATGGCGGCGGCGGAGA
TGTCAACACCTTCAGCTTGCGGGGAGTCGATTCTCATGCCGCTGTCACAG
CCAGCCGCGTCACCGCTGCCGCCGTGGCCGCCGGCCTCCCGGATGACCCG
GCAGTGTGGTCGACGGTGGCGTCTTCGGGGCCGGCGTCCGTGCGTGGCGC
CCGCAACTTTGAGGAGCGGATGCATCACCGGGCGCGGCAGGCGCAGCATC
TTTTGGAGATCCAGGTCAGTGGCTCAACCATCTTTATGGGATCTTGCAGC
AAAGCCGCTGTATCCTTTCGTTGGCGGGCCGACACCTCAGCTATATCTTA
CGTTCTTCGTGCTGGTTTCCTGCGTTGCTTGTTAGCTGGCGATAGACTGT
TCTGCCGTCATTGACCGGCTCGGAATGTCATGCCGCCATTCCTCCTCTTC
CATCCGCCCCGGCAAGTTCTCTGGAACGGCCGTGCTGCGGGTGGTTTGCT
TGATCCTTTCTTGGTGTCAGTATTTTACGGCCTTTCAAGACTCATCCGGA
CCCATGACTTTGGTTCTCTGGCTCTTCGCCGCCGGCGCCACGACAGGTGC
ATGCACGGCGGCTAGAGCGCTGCATCAACAGCGAGGGGCTGCGCTTCGTG
CGGCGGCTCGTGGCGACGCGCCAGGACCGCCCGCTGAGCCTCGAGTTCGT
CGTCCGTTTCAAGTGAGTTTCGGCGGTGAGTGGTTGAGCCAGGCAGCCAT
CACCAGTTGAGTTACTGTGATCGGGGCGGTAATAAAGTAGGCATTTTTAG
GCTATTTGGGGTACCGGCTTTGCGGCTGCATCTTTTCTCACTTCCGATTT
CTCTGCCAATCCCGGCTAAATACAATCCCAAACCTACAGAAAGGGGTCAC
TCTATTTTTCATGGATGTTCCTTGATTCCAAGCCATACCTTGACCGTCAT
TGTCTGCTGCCCGCCTGTAAACGACCTCTAACCCGCTTTTCTTTCCTTTT
CCTTTTCCTGGGATGTTGTTCTTCTCCCATTCCTTCTCTGGCTCATTTGC
TTCCCGCCGGCAGCACTGCGGTCTTTTCAGTAATGTCGCTGCAGCGCGGG
ATGCTGCCGCTGGCGCACGCCCTGCTGGAGGTGATCGAGCGGGAGCGGTT
CGCCTACTACTACGCCTGATCCGCGAAAATATCGGTTCTGACCCGTCTGT
GTGCGAACGTCATCAAGCTTTGTTCCTGCGATCGTGTTGATTGTGGCGCA
AAGACAGTCGGAAGTGGGAATTTTATAATAACAGATGGAGTCGGCATCAG
CGGCAACGGGTCTCGGTGCCTTCTTCGGCATGATGGCGAAGAGTTATGTA
CAGGAGAAGGATTCAGATCTCTGTAGGGAAGGACAAAAAGACGCCATAGA
AACACTTTCCAAGGTACAACAAATATTAGACTGAATGATGATGAAATCTT
TGGTT back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig1015:5775..8029- >mRNA_P-wetherbeei_contig1015.2.1 ID=mRNA_P-wetherbeei_contig1015.2.1|Name=mRNA_P-wetherbeei_contig1015.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=831bp|location=Sequence derived from alignment at P-wetherbeei_contig1015:5775..8029- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGCGCCGCCACGGCCTTCCGGTCTATCTGCAGCATCCAGATGTG
GCGCGAAGAACTTTCTAACATCTCCCCGGTCATTGTCCGGACGCGAGCGC
TCCTCCGCCACATCAAGCTGGCGCTGGAGGACGCCCACGGCGCCTTCGCC
CACTATGAGCTCACCGACGGCGAAGCGTACATCATGGCTGCAGGCTTCGA
CGGCTCTGCTTGTGGCGGGATCGGCGGTGGCGGTGGCGGCGGCGCCAATC
GGAACGGCAGCACCGGCTGCGGCGGCGTCGGCGCAAAGAGCGCTGCTGGC
GATGGCGGCAACGTGAACGGTGGCAATGGCACCGGCAGCGATCGAAACGG
CGGCGGCGACCTCAGCGGCCCTGGTGCGAATGGCGGCGGCGGAGATGTCA
ACACCTTCAGCTTGCGGGGAGTCGATTCTCATGCCGCTGTCACAGCCAGC
CGCGTCACCGCTGCCGCCGTGGCCGCCGGCCTCCCGGATGACCCGGCAGT
GTGGTCGACGGTGGCGTCTTCGGGGCCGGCGTCCGTGCGTGGCGCCCGCA
ACTTTGAGGAGCGGATGCATCACCGGGCGCGGCAGGCGCAGCATCTTTTG
GAGATCCAGGTGCATGCACGGCGGCTAGAGCGCTGCATCAACAGCGAGGG
GCTGCGCTTCGTGCGGCGGCTCGTGGCGACGCGCCAGGACCGCCCGCTGA
GCCTCGAGTTCGTCGTCCGTTTCAACACTGCGGTCTTTTCAGTAATGTCG
CTGCAGCGCGGGATGCTGCCGCTGGCGCACGCCCTGCTGGAGGTGATCGA
GCGGGAGCGGTTCGCCTACTACTACGCCTGA back to top
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