mRNA_P-wetherbeei_contig10147.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10147.1.1
Unique NamemRNA_P-wetherbeei_contig10147.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10147.1.1 vs. uniprot
Match: A0A3C0TUW2_9PROT (Short-chain dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TUW2_9PROT)

HSP 1 Score: 269 bits (688), Expect = 1.530e-88
Identity = 134/171 (78.36%), Postives = 151/171 (88.30%), Query Frame = 1
Query:    1 MKDVKGKVAFITGGASGMGLGMARAFAAAGMKVMIADIEAGPAQKAVDELKAKGYEAACVKVDVTKLEDVQAAARKTIETFGKVHVLCNNAGIAIGGKSETASMRNWHWVIDVNLWGVVHGLQVFMPLIKSHGEGGHVLNTASMAGRHGIRNSGPSNASNFAVVGITETMM 513
            MKDVKGKVAF+TG ASGMGLGMARAFAAAGMKVMI DIEA PAQ+AVDELK KG +AACVKVDVT LE +Q AARKT++TFGKVHVLCNNAG+  GG+SETA MRNWHWV+DVNLWGVVHGLQ F+PLI+SHGEGGHV++TAS+AG   I  +GP NA+ +AVVGI ETMM
Sbjct:    1 MKDVKGKVAFVTGAASGMGLGMARAFAAAGMKVMIGDIEAEPAQRAVDELKGKGLQAACVKVDVTSLEAMQEAARKTVDTFGKVHVLCNNAGVGCGGRSETAKMRNWHWVVDVNLWGVVHGLQAFVPLIQSHGEGGHVVSTASVAGMISIPGTGPYNATKYAVVGIMETMM 171          
BLAST of mRNA_P-wetherbeei_contig10147.1.1 vs. uniprot
Match: A0A522ARE3_9GAMM (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A522ARE3_9GAMM)

HSP 1 Score: 268 bits (685), Expect = 4.360e-88
Identity = 134/169 (79.29%), Postives = 152/169 (89.94%), Query Frame = 1
Query:    1 MKDVKGKVAFITGGASGMGLGMARAFAAAGMKVMIADIEAGPAQKAVDELKAKGYEAACVKVDVTKLEDVQAAARKTIETFGKVHVLCNNAGIAIGGKSETASMRNWHWVIDVNLWGVVHGLQVFMPLIKSHGEGGHVLNTASMAGRHGIRNSGPSNASNFAVVGITET 507
            MKDVKGKVAFITGGASGMGLGMARAFAAAGMKVMI DIEAGPAQKAVDELK KG EAACV+VDV+ +E VQAAA KT+ETFGKVHV+ NNAG+A+GG SE+ SMRNW WV+DVNLWGVV+GLQ F+PLI+SHGEGGHV++TASMAG  G+R +GP NA+ FAVVG+ ET
Sbjct:    1 MKDVKGKVAFITGGASGMGLGMARAFAAAGMKVMIGDIEAGPAQKAVDELKGKGLEAACVQVDVSNMESVQAAAAKTVETFGKVHVISNNAGVAVGGYSESCSMRNWKWVVDVNLWGVVYGLQAFVPLIQSHGEGGHVISTASMAGMVGLRGAGPYNATKFAVVGMMET 169          
BLAST of mRNA_P-wetherbeei_contig10147.1.1 vs. uniprot
Match: A0A3C0TWQ3_9PROT (Short-chain dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TWQ3_9PROT)

HSP 1 Score: 260 bits (664), Expect = 6.730e-85
Identity = 130/169 (76.92%), Postives = 150/169 (88.76%), Query Frame = 1
Query:    1 MKDVKGKVAFITGGASGMGLGMARAFAAAGMKVMIADIEAGPAQKAVDELKAKGYEAACVKVDVTKLEDVQAAARKTIETFGKVHVLCNNAGIAIGGKSETASMRNWHWVIDVNLWGVVHGLQVFMPLIKSHGEGGHVLNTASMAGRHGIRNSGPSNASNFAVVGITET 507
            MKDVKGK AFITG ASGMGLGMARAFAAAGMKVMI DIEA PAQ+A DELKAKG EAA V+VDVTKLE VQAAA+KTI+TFGKVHV+ NNAG+A+GG SET ++RNW+WV+DVN+WGVV+GLQ F+PLI SHGEGGHV++TASMAG  G+R +GP NA+ FAVVG+ ET
Sbjct:    1 MKDVKGKTAFITGAASGMGLGMARAFAAAGMKVMIGDIEAAPAQRAADELKAKGLEAASVQVDVTKLESVQAAAKKTIDTFGKVHVISNNAGVAVGGYSETCNLRNWNWVVDVNMWGVVYGLQTFVPLIMSHGEGGHVISTASMAGMVGLRGAGPYNATKFAVVGMMET 169          
BLAST of mRNA_P-wetherbeei_contig10147.1.1 vs. uniprot
Match: A0A496WNZ8_9GAMM (Short-chain dehydrogenase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A496WNZ8_9GAMM)

HSP 1 Score: 256 bits (653), Expect = 3.690e-83
Identity = 130/171 (76.02%), Postives = 146/171 (85.38%), Query Frame = 1
Query:    1 MKDVKGKVAFITGGASGMGLGMARAFAAAGMKVMIADIEAGPAQKAVDELKAKGYEAACVKVDVTKLEDVQAAARKTIETFGKVHVLCNNAGIAIGGKSETASMRNWHWVIDVNLWGVVHGLQVFMPLIKSHGEGGHVLNTASMAGRHGIRNSGPSNASNFAVVGITETMM 513
            MKDVKGKVAF+TG ASGMGLGMARAFA AGMKVM+ADIEAGP Q+ VD+LKAKGYE A V +DVTK EDV AAA+KT++TFGKVHVL NNAGI + GKSET  M NW WV+DVNLWGVVHGLQ F+PLI SHGEGGHV++TASMAG  G+  +GP NA+ FAVVGI ETMM
Sbjct:    1 MKDVKGKVAFVTGAASGMGLGMARAFAEAGMKVMLADIEAGPLQEQVDDLKAKGYEVAGVVLDVTKREDVLAAAQKTVDTFGKVHVLSNNAGIGVFGKSETCRMSNWEWVVDVNLWGVVHGLQAFVPLINSHGEGGHVVSTASMAGMVGLSGAGPYNATKFAVVGIMETMM 171          
BLAST of mRNA_P-wetherbeei_contig10147.1.1 vs. uniprot
Match: A0A351T2F7_9PROT (Short-chain dehydrogenase n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T2F7_9PROT)

HSP 1 Score: 254 bits (649), Expect = 1.270e-82
Identity = 126/171 (73.68%), Postives = 147/171 (85.96%), Query Frame = 1
Query:    1 MKDVKGKVAFITGGASGMGLGMARAFAAAGMKVMIADIEAGPAQKAVDELKAKGYEAACVKVDVTKLEDVQAAARKTIETFGKVHVLCNNAGIAIGGKSETASMRNWHWVIDVNLWGVVHGLQVFMPLIKSHGEGGHVLNTASMAGRHGIRNSGPSNASNFAVVGITETMM 513
            MKDVKGKVAFI+GGASGMGLGMARAFA AGMKVMI DIE  P ++AV+EL+ KG EA  V VDVT +E V+AAA+ T+E FGKVHV+CNNAG+ +GG SET +MRNWHWV+DVNLWGVVHGLQ F+P I SHGEGGHV+NTASMAG +G+R +GP NA+ FAVVGI+ETMM
Sbjct:    1 MKDVKGKVAFISGGASGMGLGMARAFAEAGMKVMIGDIERAPLERAVEELRQKGAEADGVVVDVTDMEAVEAAAQATVERFGKVHVVCNNAGVPVGGHSETCNMRNWHWVVDVNLWGVVHGLQAFVPRIMSHGEGGHVVNTASMAGMYGLRGAGPYNATKFAVVGISETMM 171          
BLAST of mRNA_P-wetherbeei_contig10147.1.1 vs. uniprot
Match: A0A3C0TVT0_9PROT (Short-chain dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TVT0_9PROT)

HSP 1 Score: 253 bits (645), Expect = 5.150e-82
Identity = 126/171 (73.68%), Postives = 145/171 (84.80%), Query Frame = 1
Query:    1 MKDVKGKVAFITGGASGMGLGMARAFAAAGMKVMIADIEAGPAQKAVDELKAKGYEAACVKVDVTKLEDVQAAARKTIETFGKVHVLCNNAGIAIGGKSETASMRNWHWVIDVNLWGVVHGLQVFMPLIKSHGEGGHVLNTASMAGRHGIRNSGPSNASNFAVVGITETMM 513
            MKDVKGKVAFITG ASGMGLGMARAF+ AGMKVM++DIE GP Q  V +LKAKG + A V+VDVTK ED+ AAA+KTIETFGK HVLCNNAG+ +GGKSET  +RNW W IDVNLWGVV+GLQ FMPLI+SHGE GHV++TASMAG +G+RN GP NA+ +AVV I ETMM
Sbjct:    1 MKDVKGKVAFITGAASGMGLGMARAFSEAGMKVMLSDIEEGPLQAQVADLKAKGRDVAGVRVDVTKKEDLDAAAKKTIETFGKAHVLCNNAGVGVGGKSETCDLRNWRWCIDVNLWGVVYGLQAFMPLIRSHGEEGHVMSTASMAGMYGVRNLGPYNAAKYAVVAIMETMM 171          
BLAST of mRNA_P-wetherbeei_contig10147.1.1 vs. uniprot
Match: A0A2A4LNV9_9GAMM (Short-chain dehydrogenase n=1 Tax=Cellvibrionales bacterium TaxID=2026722 RepID=A0A2A4LNV9_9GAMM)

HSP 1 Score: 245 bits (626), Expect = 4.050e-79
Identity = 122/171 (71.35%), Postives = 146/171 (85.38%), Query Frame = 1
Query:    1 MKDVKGKVAFITGGASGMGLGMARAFAAAGMKVMIADIEAGPAQKAVDELKAKGYEAACVKVDVTKLEDVQAAARKTIETFGKVHVLCNNAGIAIGGKSETASMRNWHWVIDVNLWGVVHGLQVFMPLIKSHGEGGHVLNTASMAGRHGIRNSGPSNASNFAVVGITETMM 513
            M+DV GKVAFITG ASGMGLGMARAFA AGMKVM++DIE  P Q  V +LKAKG++ A V+VDVTK++ + AAA KTIETFGKVHVLCNNAGI +GGKSET ++++W W +DVN+WGVV+GLQ F+PLI SHGEGGHV++TASMAG +G+RN GP NA+ FAVVGI ETMM
Sbjct:    1 MEDVTGKVAFITGSASGMGLGMARAFAEAGMKVMLSDIEDEPLQXQVADLKAKGHDVAGVQVDVTKVDALHAAASKTIETFGKVHVLCNNAGIGVGGKSETCNLKDWRWCVDVNMWGVVYGLQAFVPLINSHGEGGHVVSTASMAGMYGVRNLGPYNAAKFAVVGIMETMM 171          
BLAST of mRNA_P-wetherbeei_contig10147.1.1 vs. uniprot
Match: A0A352Q3J6_9GAMM (Short-chain dehydrogenase n=2 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A352Q3J6_9GAMM)

HSP 1 Score: 244 bits (624), Expect = 7.900e-79
Identity = 125/169 (73.96%), Postives = 145/169 (85.80%), Query Frame = 1
Query:    1 MKDVKGKVAFITGGASGMGLGMARAFAAAGMKVMIADIEAGPAQKAVDELKAKGYEAACVKVDVTKLEDVQAAARKTIETFGKVHVLCNNAGIAIGGKSETASMRNWHWVIDVNLWGVVHGLQVFMPLIKSHGEGGHVLNTASMAGRHGIRNSGPSNASNFAVVGITET 507
            MK+V+GKVAFITGGASGMGLGMARAFA AGMKVMI DIEA PA+KA DELK KG +AA V+VDV+KLE VQAAA  TI+TFGKVHV+CNNAGIA+GG SET +MRNW+WV+DVNLWGVV+GLQ F+P I    EGGHV++TASMAG  G+R +GP NA+ FAVVG+ ET
Sbjct:    1 MKNVEGKVAFITGGASGMGLGMARAFAKAGMKVMIGDIEAEPAKKAADELKGKGLDAASVQVDVSKLESVQAAADTTIDTFGKVHVVCNNAGIAVGGYSETCNMRNWNWVVDVNLWGVVYGLQAFVPKILEQDEGGHVVSTASMAGMVGLRGAGPYNATKFAVVGMMET 169          
BLAST of mRNA_P-wetherbeei_contig10147.1.1 vs. uniprot
Match: A0A496WXQ2_9GAMM (Short-chain dehydrogenase n=4 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A496WXQ2_9GAMM)

HSP 1 Score: 229 bits (584), Expect = 8.340e-73
Identity = 121/171 (70.76%), Postives = 133/171 (77.78%), Query Frame = 1
Query:    1 MKDVKGKVAFITGGASGMGLGMARAFAAAGMKVMIADIEAGPAQKAVDELKAKGYEAACVKVDVTKLEDVQAAARKTIETFGKVHVLCNNAGIAIGGKSETASMRNWHWVIDVNLWGVVHGLQVFMPLIKSHGEGGHVLNTASMAGRHGIRNSGPSNASNFAVVGITETMM 513
            MKDV GKVAFITGGASGMGLGMARAF AAGMKVMI DIE GP   AV ELK KG EAA V VDV   + V AAA  TI  FGKVHVLCNNAGI + GKS+  S+ NW WV+DVNLWGV++GLQ F+PLI+SHGEGGHV++TASMAG    R  GP NA+ FAVV I ETMM
Sbjct:    1 MKDVAGKVAFITGGASGMGLGMARAFGAAGMKVMIGDIEKGPMDAAVAELKLKGIEAAGVVVDVANRDSVFAAADATIAAFGKVHVLCNNAGIGVSGKSDKCSVENWQWVMDVNLWGVIYGLQAFVPLIESHGEGGHVISTASMAGMVSFRYMGPYNATKFAVVTIMETMM 171          
BLAST of mRNA_P-wetherbeei_contig10147.1.1 vs. uniprot
Match: A0A1Y5FMV3_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium 54_18_T64 TaxID=1856296 RepID=A0A1Y5FMV3_9GAMM)

HSP 1 Score: 226 bits (576), Expect = 1.240e-71
Identity = 118/171 (69.01%), Postives = 135/171 (78.95%), Query Frame = 1
Query:    1 MKDVKGKVAFITGGASGMGLGMARAFAAAGMKVMIADIEAGPAQKAVDELKAKGYEAACVKVDVTKLEDVQAAARKTIETFGKVHVLCNNAGIAIGGKSETASMRNWHWVIDVNLWGVVHGLQVFMPLIKSHGEGGHVLNTASMAGRHGIRNSGPSNASNFAVVGITETMM 513
            M+DVKGKVAFITGGASGMGLGMARAF AAGMKVMI DIE      AV  LK +G +AA VKVDV   + V AAA+ T++TFGKVHVLCNNAGI + GKS+  SM NW WV+DVNLWGV++GLQ F+PLI+SHGEGGHV++TASMAG    R  GP NA+ FAVV I ETMM
Sbjct:    1 MQDVKGKVAFITGGASGMGLGMARAFGAAGMKVMIGDIEQEALDSAVAGLKQRGIDAAGVKVDVADRDSVFAAAQATVDTFGKVHVLCNNAGIGVTGKSDKCSMENWQWVMDVNLWGVIYGLQAFVPLIESHGEGGHVMSTASMAGMVSFRYMGPYNATKFAVVTIMETMM 171          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10147.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TUW2_9PROT1.530e-8878.36Short-chain dehydrogenase n=1 Tax=Alphaproteobacte... [more]
A0A522ARE3_9GAMM4.360e-8879.29SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A3C0TWQ3_9PROT6.730e-8576.92Short-chain dehydrogenase n=1 Tax=Alphaproteobacte... [more]
A0A496WNZ8_9GAMM3.690e-8376.02Short-chain dehydrogenase n=2 Tax=Gammaproteobacte... [more]
A0A351T2F7_9PROT1.270e-8273.68Short-chain dehydrogenase n=3 Tax=Alphaproteobacte... [more]
A0A3C0TVT0_9PROT5.150e-8273.68Short-chain dehydrogenase n=1 Tax=Alphaproteobacte... [more]
A0A2A4LNV9_9GAMM4.050e-7971.35Short-chain dehydrogenase n=1 Tax=Cellvibrionales ... [more]
A0A352Q3J6_9GAMM7.900e-7973.96Short-chain dehydrogenase n=2 Tax=Porticoccaceae b... [more]
A0A496WXQ2_9GAMM8.340e-7370.76Short-chain dehydrogenase n=4 Tax=Gammaproteobacte... [more]
A0A1Y5FMV3_9GAMM1.240e-7169.01Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10147contigP-wetherbeei_contig10147:3..518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog247633.GP2143_09415
PFAMsadh_short
Model size516
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.49e-59
EggNOG OGsCOG4221@1|root,COG4221@2|Bacteria,1MVYG@1224|Proteobacteria,1T3IK@1236|Gammaproteobacteria,1JAB3@118884|unclassified Gammaproteobacteria
DescriptionCOG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Cds size516
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.6228807-CDS-P-wetherbeei_contig10147:2..5181683185856.6228807-CDS-P-wetherbeei_contig10147:2..518Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10147 3..518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10147.1.1prot_P-wetherbeei_contig10147.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10147 3..518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10147.1.1

>prot_P-wetherbeei_contig10147.1.1 ID=prot_P-wetherbeei_contig10147.1.1|Name=mRNA_P-wetherbeei_contig10147.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
MKDVKGKVAFITGGASGMGLGMARAFAAAGMKVMIADIEAGPAQKAVDEL
KAKGYEAACVKVDVTKLEDVQAAARKTIETFGKVHVLCNNAGIAIGGKSE
TASMRNWHWVIDVNLWGVVHGLQVFMPLIKSHGEGGHVLNTASMAGRHGI
RNSGPSNASNFAVVGITETMMS
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mRNA from alignment at P-wetherbeei_contig10147:3..518-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10147.1.1 ID=mRNA_P-wetherbeei_contig10147.1.1|Name=mRNA_P-wetherbeei_contig10147.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig10147:3..518- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGACGTAAAAGGAAAAGTCGCATTCATCACCGGCGGCGCGAGCGG CATGGGATTGGGCATGGCCCGCGCCTTCGCGGCGGCGGGCATGAAGGTCA TGATCGCCGATATCGAGGCCGGACCCGCGCAAAAGGCCGTAGATGAACTC AAGGCCAAGGGCTATGAAGCCGCCTGCGTGAAAGTGGACGTTACCAAGCT GGAGGACGTGCAGGCCGCCGCCAGGAAAACCATTGAGACGTTCGGCAAGG TGCATGTGCTGTGCAACAATGCGGGCATCGCCATCGGCGGCAAAAGTGAA ACCGCCAGCATGCGCAACTGGCATTGGGTGATCGATGTGAATCTGTGGGG CGTGGTGCACGGCTTGCAGGTGTTCATGCCCCTGATCAAGTCGCATGGCG AGGGCGGCCATGTGCTCAATACCGCCTCCATGGCCGGCAGGCATGGCATC CGCAATTCCGGTCCCTCCAACGCCTCGAACTTCGCCGTGGTCGGCATTAC CGAAACCATGATGAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10147:3..518-

>mRNA_P-wetherbeei_contig10147.1.1 ID=mRNA_P-wetherbeei_contig10147.1.1|Name=mRNA_P-wetherbeei_contig10147.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig10147:3..518- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGACGTAAAAGGAAAAGTCGCATTCATCACCGGCGGCGCGAGCGG
CATGGGATTGGGCATGGCCCGCGCCTTCGCGGCGGCGGGCATGAAGGTCA
TGATCGCCGATATCGAGGCCGGACCCGCGCAAAAGGCCGTAGATGAACTC
AAGGCCAAGGGCTATGAAGCCGCCTGCGTGAAAGTGGACGTTACCAAGCT
GGAGGACGTGCAGGCCGCCGCCAGGAAAACCATTGAGACGTTCGGCAAGG
TGCATGTGCTGTGCAACAATGCGGGCATCGCCATCGGCGGCAAAAGTGAA
ACCGCCAGCATGCGCAACTGGCATTGGGTGATCGATGTGAATCTGTGGGG
CGTGGTGCACGGCTTGCAGGTGTTCATGCCCCTGATCAAGTCGCATGGCG
AGGGCGGCCATGTGCTCAATACCGCCTCCATGGCCGGCAGGCATGGCATC
CGCAATTCCGGTCCCTCCAACGCCTCGAACTTCGCCGTGGTCGGCATTAC
CGAAACCATGATGAGC
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