mRNA_P-wetherbeei_contig10145.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10145.1.1
Unique NamemRNA_P-wetherbeei_contig10145.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10145.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10145contigP-wetherbeei_contig10145:1190..1536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size176
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.5905538-CDS-P-wetherbeei_contig10145:1189..12771683185856.5905538-CDS-P-wetherbeei_contig10145:1189..1277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10145 1190..1277 +
1683185856.600379-CDS-P-wetherbeei_contig10145:1448..15341683185856.600379-CDS-P-wetherbeei_contig10145:1448..1534Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10145 1449..1534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10145.1.1prot_P-wetherbeei_contig10145.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10145 1190..1534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10145.1.1

>prot_P-wetherbeei_contig10145.1.1 ID=prot_P-wetherbeei_contig10145.1.1|Name=mRNA_P-wetherbeei_contig10145.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
SVLALVNGELAQRHRGKGEIVTVSSKVGDAVHEPPHQTLDISQGARCARW
RYGPQNHY
back to top

mRNA from alignment at P-wetherbeei_contig10145:1190..1536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10145.1.1 ID=mRNA_P-wetherbeei_contig10145.1.1|Name=mRNA_P-wetherbeei_contig10145.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=347bp|location=Sequence derived from alignment at P-wetherbeei_contig10145:1190..1536+ (Phaeothamnion wetherbeei SAG_119_79)
TCCGTGCTGGCGCTGGTGAACGGGGAGCTGGCGCAGCGGCACCGCGGGAA
GGGTGAGATCGTCACCGTCTCGAGCAAAGTCGGCGACGGTAAGTTCTTGT
TTTGCTTTGCGTAATCTTCTGTTTCATGAAATATGTATTTTAAGCCCACA
ATGGTCAGCCAGTCCGTGCGATTTCAATCCTCCATTTGTTCTTCTTTTCC
TTTTCCTTTTCCTTTTCCACATGGATATTTGTCGATTTTCGTTTGTTCGT
GCAGAAAAGCTGTCCACGAACCTCCACACCAAACGCTCGATATTTCTCAA
GGAGCTCGCTGCGCACGCTGGCGATATGGTCCTCAAAACCATTACGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10145:1190..1536+

>mRNA_P-wetherbeei_contig10145.1.1 ID=mRNA_P-wetherbeei_contig10145.1.1|Name=mRNA_P-wetherbeei_contig10145.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig10145:1190..1536+ (Phaeothamnion wetherbeei SAG_119_79)
TCCGTGCTGGCGCTGGTGAACGGGGAGCTGGCGCAGCGGCACCGCGGGAA
GGGTGAGATCGTCACCGTCTCGAGCAAAGTCGGCGACGCTGTCCACGAAC
CTCCACACCAAACGCTCGATATTTCTCAAGGAGCTCGCTGCGCACGCTGG
CGATATGGTCCTCAAAACCATTAC
back to top