mRNA_P-wetherbeei_contig10139.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10139.1.1
Unique NamemRNA_P-wetherbeei_contig10139.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A6S7FTR6_PARCT (Uncharacterized protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FTR6_PARCT)

HSP 1 Score: 124 bits (311), Expect = 3.010e-31
Identity = 65/139 (46.76%), Postives = 88/139 (63.31%), Query Frame = 2
Query:  272 AAVGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPL 688
            + VGY DADW  +LD+R+S   +VF  S AAISW SK Q+CVA ST EAEY+A     Q AVWL++L S L  E + P L+ EDN++ + +A +     R KHI+IK+H +R+ VAS A  L      + +AD+ TK L
Sbjct:   13 SCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSEPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGL 151          
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: UPI001C093D0F (LOW QUALITY PROTEIN: secreted RxLR effector protein 161-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C093D0F)

HSP 1 Score: 125 bits (313), Expect = 1.330e-30
Identity = 67/137 (48.91%), Postives = 89/137 (64.96%), Query Frame = 2
Query:  278 VGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPL 688
            +GY DADW  +LD+R+SV  ++F  SGAA+SW SK Q+ V  ST EAEY+A    AQ AVW+R+L S L    +  T++ EDN+S + +A +     R KHI+IK H +R QVASGA  L   K  D +AD+LTK L
Sbjct:   93 IGYSDADWAGDLDDRKSVSGYMFKMSGAAVSWKSKKQSXVLLSTAEAEYMALASAAQEAVWMRQLLSDLKNCPAGATVIYEDNQSAICMARNPQFHGRAKHIDIKHHFIRDQVASGAVDLKDCKTDDMIADMLTKGL 229          
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A151QYP0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QYP0_CAJCA)

HSP 1 Score: 127 bits (318), Expect = 3.910e-30
Identity = 61/148 (41.22%), Postives = 92/148 (62.16%), Query Frame = 2
Query:  278 VGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPLPVPRIRTYGKI 721
            +GY D+DW  ++D+R+S   +VF    +A +WLSK Q  VA ST EAEYVA +++ QHAVWLR L S L +  +   L+  DNRS + LA +  +  R KHI+++FH +R++V  G+  L    + +Q+ D+ TKPLP    +   K+
Sbjct:  223 IGYSDSDWCGDVDDRKSTAGYVFFMGNSAFTWLSKKQPIVALSTCEAEYVAASWSVQHAVWLRNLLSKLEIMKAEKVLIRVDNRSAIELAKNPINHERSKHIDVRFHFIREKVKEGSVELEHVGSKEQVTDIFTKPLPTTTFQKLRKL 370          
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A151S284_CAJCA (Copia protein (Fragment) n=3 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S284_CAJCA)

HSP 1 Score: 119 bits (299), Expect = 1.410e-29
Identity = 59/147 (40.14%), Postives = 89/147 (60.54%), Query Frame = 2
Query:  281 GYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPLPVPRIRTYGKI 721
            GY D+DW  ++D+R+S   +VF     A +WL K Q  VA ST EAEYVA +++ QHAVWLR L S L +  +   L+  DNRS + LA +  +  R KHI+++FH +R++V  G+  L    + +++AD+ TKPL     +   K+
Sbjct:    3 GYSDSDWCGDVDDRKSTAGYVFFMGNTAFTWLLKKQPIVALSTCEAEYVAASWSVQHAVWLRNLLSKLEIMKAEKVLIRVDNRSAIELAKNPINHERSKHIDVRFHFIREKVKEGSVELEHVGSKEKVADIFTKPLHATTFQELRKL 149          
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A1X7SEB0_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SEB0_AMPQE)

HSP 1 Score: 124 bits (310), Expect = 1.480e-29
Identity = 64/141 (45.39%), Postives = 86/141 (60.99%), Query Frame = 2
Query:  278 VGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPLPVPR 700
            VGY DADW  +LD+R S   ++FL +G AISWLSK Q  V+ ST EAEYV+     Q AVW+RRL   +     +PT++ EDN+  +A+A +  S  R KHI IK+H VR+ +  G  +L      + +ADL TKPL   R
Sbjct:  152 VGYSDADWAGDLDDRHSTSGNLFLLAGGAISWLSKKQPTVSLSTAEAEYVSLCSATQEAVWIRRLLHDINCSQGAPTVIKEDNQGTIAIARNPVSHSRTKHIEIKYHYVRETIMDGQVSLEYCPTEEMIADLFTKPLASER 292          
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A151R5Z5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R5Z5_CAJCA)

HSP 1 Score: 122 bits (306), Expect = 1.590e-29
Identity = 60/148 (40.54%), Postives = 89/148 (60.14%), Query Frame = 2
Query:  278 VGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPLPVPRIRTYGKI 721
            +GY D+DW  ++D+R+S   +VF     A +WLSK Q  VA ST EAEYVA +++ QHAVWLR L   L +  +   L+  DNRS + LA +  +  R KHI+ +FH +R++V  G+  L    + +Q+ D+ TKPLP    +   K+
Sbjct:   96 IGYSDSDWCGDVDDRKSTTGYVFFLGNTAFTWLSKKQPIVALSTCEAEYVAASWSVQHAVWLRNLLRKLEIMKAEKVLIRVDNRSAIELAKNSINHERSKHIDFRFHFIREKVKEGSVELEHVGSKEQVTDIFTKPLPATTFQELRKL 243          
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A151TQU9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TQU9_CAJCA)

HSP 1 Score: 128 bits (321), Expect = 2.770e-29
Identity = 62/148 (41.89%), Postives = 92/148 (62.16%), Query Frame = 2
Query:  278 VGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPLPVPRIRTYGKI 721
            +GY D+DW  ++D+R+S   +VF     A +WLSK Q  VA ST EAEYVA +++ QHAVWLR L S L +  +   L+  DNRS + LA +  +  R KHI+++FH +R++V  G+  L    + +Q+AD+ TKPLP    +   K+
Sbjct:  648 IGYSDSDWCGDVDDRKSTAGYVFFMGNTAFTWLSKKQPIVALSTCEAEYVAASWSVQHAVWLRNLLSKLEIMKAEKVLIRVDNRSAIELAKNPINHERSKHIDVRFHFIREKVKEGSVELEHVGSKEQVADIFTKPLPATTFQELRKL 795          
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A0S7JMV4_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JMV4_9TELE)

HSP 1 Score: 122 bits (305), Expect = 3.010e-29
Identity = 65/152 (42.76%), Postives = 91/152 (59.87%), Query Frame = 2
Query:  263 GRGAAVGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPLPVPRIRTYGK 718
            G    +G+ DADW  +LD+R S   ++FL SG A+SWLSK Q  VA ST EAEYVA +  AQ   WLRRL + LG+ V+ PT++ EDN+  +A+A +     R KHI+I++H +R+ V  G   L         AD+LTKPL   +   + +
Sbjct:  108 GNKDLIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLGM-VTKPTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQDGEVKLEYCPTDKMKADILTKPLARQKFENFRR 258          
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A3S3PWW7_9ACAR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3PWW7_9ACAR)

HSP 1 Score: 127 bits (318), Expect = 3.730e-29
Identity = 63/158 (39.87%), Postives = 95/158 (60.13%), Query Frame = 2
Query:  233 SRRLSLLPKMGRGAAVGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPLPVPRIR 706
            +R  +L+ K    A +GY DADW  N D+R+S   ++F   G+++SW SK Q  VA S+ EAEY+A +   Q  VWLR L   +G +   PT + EDN++C+ L     +  R KHI+I+ H +R++V SG   +    + + +AD+LTKPLP PR +
Sbjct:  416 TRDFALMLKPENEALIGYSDADWGGNTDDRKSTSGYLFQLGGSSLSWNSKKQQTVALSSTEAEYMALSTATQECVWLRNLLQEIGFKQEMPTTIFEDNQACIKLTKSTKNHARTKHIDIRHHFIREKVDSGLVEIEYMSSEEMIADILTKPLPGPRFQ 573          
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A8D7ZWP4_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D7ZWP4_CULPI)

HSP 1 Score: 123 bits (309), Expect = 8.460e-29
Identity = 67/158 (42.41%), Postives = 91/158 (57.59%), Query Frame = 2
Query:  257 KMGRGAA----VGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPLPVPRIRTYGK 718
            K+GR       VG+ DADW  +  +R+S    VF   GAA+SW S+ QNCVA+ST EAEYVA +  AQ AVWLRRL   LG E   PT+++EDNRSC+   S      R KHI+ K++  +  V  G   L        +AD+ TKPL   +++ + +
Sbjct:  221 KLGRSVKDLTLVGFSDADWSGDSTDRKSTSGFVFELGGAAVSWGSRKQNCVATSTMEAEYVALSEAAQEAVWLRRLLCELGEEQKEPTIMNEDNRSCIDFVSQDRQNKRSKHIDTKYYHAKDLVTGGVIQLNYCPTDSMVADVFTKPLGATKMKKFAE 378          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S7FTR6_PARCT3.010e-3146.76Uncharacterized protein n=3 Tax=Paramuricea clavat... [more]
UPI001C093D0F1.330e-3048.91LOW QUALITY PROTEIN: secreted RxLR effector protei... [more]
A0A151QYP0_CAJCA3.910e-3041.22Retrovirus-related Pol polyprotein from transposon... [more]
A0A151S284_CAJCA1.410e-2940.14Copia protein (Fragment) n=3 Tax=Cajanus cajan Tax... [more]
A0A1X7SEB0_AMPQE1.480e-2945.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151R5Z5_CAJCA1.590e-2940.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A151TQU9_CAJCA2.770e-2941.89Retrovirus-related Pol polyprotein from transposon... [more]
A0A0S7JMV4_9TELE3.010e-2942.76POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A3S3PWW7_9ACAR3.730e-2939.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8D7ZWP4_CULPI8.460e-2942.41Copia protein n=1 Tax=Culex pipiens TaxID=7175 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10139contigP-wetherbeei_contig10139:21..961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog400682.PAC_15698807
Model size941
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categorymitochondrion
Exons1
Evalue3.34e-31
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3A8FB@33154|Opisthokonta
Descriptiontransposition, RNA-mediated
Cds size678
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.4662106-UTR-P-wetherbeei_contig10139:20..1951683185856.4662106-UTR-P-wetherbeei_contig10139:20..195Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10139 21..195 +
1683185856.4819968-UTR-P-wetherbeei_contig10139:873..9611683185856.4819968-UTR-P-wetherbeei_contig10139:873..961Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10139 874..961 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.474461-CDS-P-wetherbeei_contig10139:195..8731683185856.474461-CDS-P-wetherbeei_contig10139:195..873Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10139 196..873 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10139.1.1prot_P-wetherbeei_contig10139.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10139 196..873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10139.1.1

>prot_P-wetherbeei_contig10139.1.1 ID=prot_P-wetherbeei_contig10139.1.1|Name=mRNA_P-wetherbeei_contig10139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp
MSQRCARNIPGPALLTAAFSRRLSLLPKMGRGAAVGYVDADWMRNLDNRR
SVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLA
SCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASG
ATTLVPKKAVDQLADLLTKPLPVPRIRTYGKIYQGIIDCRLDGRQLLIFH
DCLITGGCWNAAQSSRSPMPVWRQE*
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mRNA from alignment at P-wetherbeei_contig10139:21..961+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10139.1.1 ID=mRNA_P-wetherbeei_contig10139.1.1|Name=mRNA_P-wetherbeei_contig10139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=941bp|location=Sequence derived from alignment at P-wetherbeei_contig10139:21..961+ (Phaeothamnion wetherbeei SAG_119_79)
TGGTGGCAGGCGGAGGGTGGCAGGCGGCGGGCGTGGCAGTGATAGAGGGT TTTGCGGCAGGCGATGGTTCCCTAACCTAAAGCTGATCGTGAGTGTATTT TTGCCGTGTTTTGGAGAACCGTCGCCAGAAGATGGCGTTGTTGCTGTGTC CCTTGTCACTCCCGCTGTGAGTTAAATGTCGCAGCGATGTGCGAGAAACA TCCCTGGGCCAGCTTTACTAACTGCAGCATTTTCCCGTCGCCTCTCTCTT CTTCCAAAAATGGGCCGTGGCGCTGCGGTCGGCTACGTGGATGCCGACTG GATGCGCAACCTCGACAATCGGCGTTCGGTCGGGGCGCACGTTTTCCTGC GGTCTGGTGCCGCCATCTCCTGGCTCTCCAAGCTGCAGAACTGCGTGGCC TCTTCGACCCGTGAGGCCGAGTACGTAGCGACGACCTACACGGCGCAGCA CGCGGTATGGCTGCGAAGACTGGCGAGCTGTTTGGGGCTAGAAGTGTCAT CGCCCACTCTGCTCGACGAGGACAACCGGAGCTGTGTCGCTTTGGCGAGC GACGTCTTCAGCGAGCATCGTGGCAAGCACATTAACATCAAGTTCCACAT CGTGCGGAAGCAGGTGGCGAGCGGCGCGACTACTCTCGTCCCTAAAAAGG CGGTGGACCAGCTGGCGGACTTGCTTACAAAGCCACTTCCGGTTCCCCGT ATTCGTACTTACGGGAAAATATATCAGGGAATAATTGACTGCCGATTAGA TGGGCGCCAGCTTCTGATCTTCCATGACTGTCTGATCACGGGGGGGTGTT GGAATGCTGCTCAGTCATCCAGATCGCCAATGCCGGTGTGGCGTCAGGAG TAACGCCGCACCAGCGATTACACCAAGTGTGACCGCCCTGCAATGGTAAT CAACTCTCGTCTCTCCTGATCTCACGACAGGATTCGTCCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10139:21..961+

>mRNA_P-wetherbeei_contig10139.1.1 ID=mRNA_P-wetherbeei_contig10139.1.1|Name=mRNA_P-wetherbeei_contig10139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig10139:21..961+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCAGCGATGTGCGAGAAACATCCCTGGGCCAGCTTTACTAACTGC
AGCATTTTCCCGTCGCCTCTCTCTTCTTCCAAAAATGGGCCGTGGCGCTG
CGGTCGGCTACGTGGATGCCGACTGGATGCGCAACCTCGACAATCGGCGT
TCGGTCGGGGCGCACGTTTTCCTGCGGTCTGGTGCCGCCATCTCCTGGCT
CTCCAAGCTGCAGAACTGCGTGGCCTCTTCGACCCGTGAGGCCGAGTACG
TAGCGACGACCTACACGGCGCAGCACGCGGTATGGCTGCGAAGACTGGCG
AGCTGTTTGGGGCTAGAAGTGTCATCGCCCACTCTGCTCGACGAGGACAA
CCGGAGCTGTGTCGCTTTGGCGAGCGACGTCTTCAGCGAGCATCGTGGCA
AGCACATTAACATCAAGTTCCACATCGTGCGGAAGCAGGTGGCGAGCGGC
GCGACTACTCTCGTCCCTAAAAAGGCGGTGGACCAGCTGGCGGACTTGCT
TACAAAGCCACTTCCGGTTCCCCGTATTCGTACTTACGGGAAAATATATC
AGGGAATAATTGACTGCCGATTAGATGGGCGCCAGCTTCTGATCTTCCAT
GACTGTCTGATCACGGGGGGGTGTTGGAATGCTGCTCAGTCATCCAGATC
GCCAATGCCGGTGTGGCGTCAGGAGTAA
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