mRNA_P-wetherbeei_contig10139.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A6S7FTR6_PARCT (Uncharacterized protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FTR6_PARCT) HSP 1 Score: 124 bits (311), Expect = 3.010e-31 Identity = 65/139 (46.76%), Postives = 88/139 (63.31%), Query Frame = 2 Query: 272 AAVGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPL 688 + VGY DADW +LD+R+S +VF S AAISW SK Q+CVA ST EAEY+A Q AVWL++L S L E + P L+ EDN++ + +A + R KHI+IK+H +R+ VAS A L + +AD+ TK L Sbjct: 13 SCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSEPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGL 151
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: UPI001C093D0F (LOW QUALITY PROTEIN: secreted RxLR effector protein 161-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C093D0F) HSP 1 Score: 125 bits (313), Expect = 1.330e-30 Identity = 67/137 (48.91%), Postives = 89/137 (64.96%), Query Frame = 2 Query: 278 VGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPL 688 +GY DADW +LD+R+SV ++F SGAA+SW SK Q+ V ST EAEY+A AQ AVW+R+L S L + T++ EDN+S + +A + R KHI+IK H +R QVASGA L K D +AD+LTK L Sbjct: 93 IGYSDADWAGDLDDRKSVSGYMFKMSGAAVSWKSKKQSXVLLSTAEAEYMALASAAQEAVWMRQLLSDLKNCPAGATVIYEDNQSAICMARNPQFHGRAKHIDIKHHFIRDQVASGAVDLKDCKTDDMIADMLTKGL 229
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A151QYP0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QYP0_CAJCA) HSP 1 Score: 127 bits (318), Expect = 3.910e-30 Identity = 61/148 (41.22%), Postives = 92/148 (62.16%), Query Frame = 2 Query: 278 VGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPLPVPRIRTYGKI 721 +GY D+DW ++D+R+S +VF +A +WLSK Q VA ST EAEYVA +++ QHAVWLR L S L + + L+ DNRS + LA + + R KHI+++FH +R++V G+ L + +Q+ D+ TKPLP + K+ Sbjct: 223 IGYSDSDWCGDVDDRKSTAGYVFFMGNSAFTWLSKKQPIVALSTCEAEYVAASWSVQHAVWLRNLLSKLEIMKAEKVLIRVDNRSAIELAKNPINHERSKHIDVRFHFIREKVKEGSVELEHVGSKEQVTDIFTKPLPTTTFQKLRKL 370
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A151S284_CAJCA (Copia protein (Fragment) n=3 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S284_CAJCA) HSP 1 Score: 119 bits (299), Expect = 1.410e-29 Identity = 59/147 (40.14%), Postives = 89/147 (60.54%), Query Frame = 2 Query: 281 GYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPLPVPRIRTYGKI 721 GY D+DW ++D+R+S +VF A +WL K Q VA ST EAEYVA +++ QHAVWLR L S L + + L+ DNRS + LA + + R KHI+++FH +R++V G+ L + +++AD+ TKPL + K+ Sbjct: 3 GYSDSDWCGDVDDRKSTAGYVFFMGNTAFTWLLKKQPIVALSTCEAEYVAASWSVQHAVWLRNLLSKLEIMKAEKVLIRVDNRSAIELAKNPINHERSKHIDVRFHFIREKVKEGSVELEHVGSKEKVADIFTKPLHATTFQELRKL 149
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A1X7SEB0_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SEB0_AMPQE) HSP 1 Score: 124 bits (310), Expect = 1.480e-29 Identity = 64/141 (45.39%), Postives = 86/141 (60.99%), Query Frame = 2 Query: 278 VGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPLPVPR 700 VGY DADW +LD+R S ++FL +G AISWLSK Q V+ ST EAEYV+ Q AVW+RRL + +PT++ EDN+ +A+A + S R KHI IK+H VR+ + G +L + +ADL TKPL R Sbjct: 152 VGYSDADWAGDLDDRHSTSGNLFLLAGGAISWLSKKQPTVSLSTAEAEYVSLCSATQEAVWIRRLLHDINCSQGAPTVIKEDNQGTIAIARNPVSHSRTKHIEIKYHYVRETIMDGQVSLEYCPTEEMIADLFTKPLASER 292
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A151R5Z5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R5Z5_CAJCA) HSP 1 Score: 122 bits (306), Expect = 1.590e-29 Identity = 60/148 (40.54%), Postives = 89/148 (60.14%), Query Frame = 2 Query: 278 VGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPLPVPRIRTYGKI 721 +GY D+DW ++D+R+S +VF A +WLSK Q VA ST EAEYVA +++ QHAVWLR L L + + L+ DNRS + LA + + R KHI+ +FH +R++V G+ L + +Q+ D+ TKPLP + K+ Sbjct: 96 IGYSDSDWCGDVDDRKSTTGYVFFLGNTAFTWLSKKQPIVALSTCEAEYVAASWSVQHAVWLRNLLRKLEIMKAEKVLIRVDNRSAIELAKNSINHERSKHIDFRFHFIREKVKEGSVELEHVGSKEQVTDIFTKPLPATTFQELRKL 243
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A151TQU9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TQU9_CAJCA) HSP 1 Score: 128 bits (321), Expect = 2.770e-29 Identity = 62/148 (41.89%), Postives = 92/148 (62.16%), Query Frame = 2 Query: 278 VGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPLPVPRIRTYGKI 721 +GY D+DW ++D+R+S +VF A +WLSK Q VA ST EAEYVA +++ QHAVWLR L S L + + L+ DNRS + LA + + R KHI+++FH +R++V G+ L + +Q+AD+ TKPLP + K+ Sbjct: 648 IGYSDSDWCGDVDDRKSTAGYVFFMGNTAFTWLSKKQPIVALSTCEAEYVAASWSVQHAVWLRNLLSKLEIMKAEKVLIRVDNRSAIELAKNPINHERSKHIDVRFHFIREKVKEGSVELEHVGSKEQVADIFTKPLPATTFQELRKL 795
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A0S7JMV4_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JMV4_9TELE) HSP 1 Score: 122 bits (305), Expect = 3.010e-29 Identity = 65/152 (42.76%), Postives = 91/152 (59.87%), Query Frame = 2 Query: 263 GRGAAVGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPLPVPRIRTYGK 718 G +G+ DADW +LD+R S ++FL SG A+SWLSK Q VA ST EAEYVA + AQ WLRRL + LG+ V+ PT++ EDN+ +A+A + R KHI+I++H +R+ V G L AD+LTKPL + + + Sbjct: 108 GNKDLIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLGM-VTKPTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQDGEVKLEYCPTDKMKADILTKPLARQKFENFRR 258
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A3S3PWW7_9ACAR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3PWW7_9ACAR) HSP 1 Score: 127 bits (318), Expect = 3.730e-29 Identity = 63/158 (39.87%), Postives = 95/158 (60.13%), Query Frame = 2 Query: 233 SRRLSLLPKMGRGAAVGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPLPVPRIR 706 +R +L+ K A +GY DADW N D+R+S ++F G+++SW SK Q VA S+ EAEY+A + Q VWLR L +G + PT + EDN++C+ L + R KHI+I+ H +R++V SG + + + +AD+LTKPLP PR + Sbjct: 416 TRDFALMLKPENEALIGYSDADWGGNTDDRKSTSGYLFQLGGSSLSWNSKKQQTVALSSTEAEYMALSTATQECVWLRNLLQEIGFKQEMPTTIFEDNQACIKLTKSTKNHARTKHIDIRHHFIREKVDSGLVEIEYMSSEEMIADILTKPLPGPRFQ 573
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Match: A0A8D7ZWP4_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D7ZWP4_CULPI) HSP 1 Score: 123 bits (309), Expect = 8.460e-29 Identity = 67/158 (42.41%), Postives = 91/158 (57.59%), Query Frame = 2 Query: 257 KMGRGAA----VGYVDADWMRNLDNRRSVGAHVFLRSGAAISWLSKLQNCVASSTREAEYVATTYTAQHAVWLRRLASCLGLEVSSPTLLDEDNRSCVALASDVFSEHRGKHINIKFHIVRKQVASGATTLVPKKAVDQLADLLTKPLPVPRIRTYGK 718 K+GR VG+ DADW + +R+S VF GAA+SW S+ QNCVA+ST EAEYVA + AQ AVWLRRL LG E PT+++EDNRSC+ S R KHI+ K++ + V G L +AD+ TKPL +++ + + Sbjct: 221 KLGRSVKDLTLVGFSDADWSGDSTDRKSTSGFVFELGGAAVSWGSRKQNCVATSTMEAEYVALSEAAQEAVWLRRLLCELGEEQKEPTIMNEDNRSCIDFVSQDRQNKRSKHIDTKYYHAKDLVTGGVIQLNYCPTDSMVADVFTKPLGATKMKKFAE 378 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10139.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig10139.1.1 >prot_P-wetherbeei_contig10139.1.1 ID=prot_P-wetherbeei_contig10139.1.1|Name=mRNA_P-wetherbeei_contig10139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp MSQRCARNIPGPALLTAAFSRRLSLLPKMGRGAAVGYVDADWMRNLDNRRback to top mRNA from alignment at P-wetherbeei_contig10139:21..961+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig10139.1.1 ID=mRNA_P-wetherbeei_contig10139.1.1|Name=mRNA_P-wetherbeei_contig10139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=941bp|location=Sequence derived from alignment at P-wetherbeei_contig10139:21..961+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig10139:21..961+ >mRNA_P-wetherbeei_contig10139.1.1 ID=mRNA_P-wetherbeei_contig10139.1.1|Name=mRNA_P-wetherbeei_contig10139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig10139:21..961+ (Phaeothamnion wetherbeei SAG_119_79)back to top |